Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Reverse (-)

57261073 .. 57263096

Gene Structure 2024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATCTCAGGAATGTGGGTGGTGAGGCTTATGCTCATGCTGTCCTGTTGCTCAACAATAATGGCATGGATGTGTTTTACAGTGGTGATTCTTTGACATATAAGGTTATTTGGGGTGTGTTTGATTTCTACTTCTTTGCTGGGACTACTCCATTGGAGGTTGTTGGATTTCACCAATCCAGATGGGGTTACCAAAACTTATCAGTGATTGAAGACATAGTTGAGAACTATCAAAAGGCTCCAATTCCATTAGATGTCACTTGGAATGATGATGATCACATGGACAGAAAATTAGGCTTTACTCTCAACCCCAAGAACTACCCTTGGACAAAGCTTTTGGCATTCGTAAACAAAATACGTAGCATGGGCATGAAGTACATTGTCATTATTGATCCTGGAATTGCTGCTAATCCAGTTACGCTGTATACCAAAGAGCATGATGGTGAACCCTTCTTGACTCAAGTTGCCCCAGGGCCTGTAAACTTCCCGGACTACCTCAACCCCAAAACTGTGTCATGGTGGGGTGATGAGATCCGCCACTTTCATGAACTTGTCCCTATTGATGGCTTCTGGATTGACTTGAACAGGGCTGCAGAGTACAATGCTCACAATCTGTATGGCATCACCGAAACCATTGCAACTCAGAAGGCTGTTGTAGGCCTTGATGGCAAGCGGCCCTTTGTACTATCCCGCTCCACTTATGTTGGTTCAGGCAAGTATGCTGCACCTTGGACTGGTGATAACAAGGGTACTTGGGATGACCTGAAGTACTCAATCCCCCAACATGCTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

265

Amino Acids

30.09

Weight (kDa)

5.43

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	51 - 264	7.4e-57	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	693
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	3 cut(s)	535, 673, 691
AclWI	GGATC	3 cut(s)	12, 386, 526
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	5 cut(s)	377, 599, 684, 751, 770
AfiI	CCNNNNNNNGG	2 cut(s)	563, 734
AgsI	TTSAA	2 cut(s)	212, 583
AjnI	CCWGG	2 cut(s)	394, 469
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
AlwI	GGATC	3 cut(s)	12, 386, 526
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	3 cut(s)	473, 658, 674
ApeKI	GCWGC	3 cut(s)	404, 590, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspS9I	GGNCC	2 cut(s)	473, 675
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	7 cut(s)	35, 98, 164, 455, 536, 616, 749
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	391, 577, 709
BccI	CCATC	4 cut(s)	177, 434, 557, 659
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	396, 471
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	591
BglI	GCCNNNNNGGC	1 cut(s)	666
BisI	GCNGC	4 cut(s)	405, 591, 674, 723
BlsI	GCNGC	4 cut(s)	406, 592, 675, 724
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	3 cut(s)	396, 471, 488
BmgT120I	GGNCC	2 cut(s)	473, 675
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	3 cut(s)	396, 471, 488
BmsI	GCATC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	323, 469, 470, 728
Bsc4I	CCNNNNNNNGG	2 cut(s)	563, 734
Bse1I	ACTGG	2 cut(s)	413, 739
Bse3DI	GCAATG	1 cut(s)	633
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	396, 471
BseDI	CCNNGG	4 cut(s)	323, 469, 470, 728
BseGI	GGATG	2 cut(s)	76, 763
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	563, 734
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	2 cut(s)	22, 656
BseNI	ACTGG	2 cut(s)	413, 739
BseXI	GCAGC	3 cut(s)	391, 577, 709
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	3 cut(s)	475, 660, 676
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	157, 539
BslI	CCNNNNNNNGG	2 cut(s)	563, 734
BsmFI	GGGAC	2 cut(s)	157, 539
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	475, 660, 676
Bsp143I	GATC	4 cut(s)	4, 274, 391, 531
BspACI	CCGC	3 cut(s)	535, 673, 691
BspANI	GGCC	3 cut(s)	475, 660, 676
BspCNI	CTCAG	2 cut(s)	21, 655
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	3 cut(s)	12, 386, 526
BsrBI	CCGCTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	2 cut(s)	413, 739
BssECI	CCNNGG	4 cut(s)	323, 469, 470, 728
BssMI	GATC	4 cut(s)	4, 274, 391, 531
BssNAI	GTATAC	1 cut(s)	426
BssT1I	CCWWGG	2 cut(s)	323, 728
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	396, 471
Bst4CI	ACNGT	2 cut(s)	83, 511
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	671
BstDEI	CTNAG	2 cut(s)	8, 642
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	76, 763
BstKTI	GATC	4 cut(s)	7, 277, 394, 534
BstMBI	GATC	4 cut(s)	4, 274, 391, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	666
BstNI	CCWGG	2 cut(s)	396, 471
BstNSI	RCATGY	1 cut(s)	788
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	394, 469, 486
BstSFI	CTRYAG	1 cut(s)	591
BstSNI	TACGTA	1 cut(s)	359
BstV1I	GCAGC	3 cut(s)	391, 577, 709
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	4, 531
BstYI	RGATCY	2 cut(s)	4, 531
BstZ17I	GTATAC	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	475, 660, 676
BtsCI	GGATG	2 cut(s)	76, 763
BtsIMutI	CAGTG	2 cut(s)	88, 210
Cac8I	GCNNGC	1 cut(s)	671
CaiI	CAGNNNCTG	1 cut(s)	476
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	473, 675
Csp6I	GTAC	5 cut(s)	376, 598, 683, 750, 769
CspCI	CAANNNNNGTGG	2 cut(s)	685, 720
CviAII	CATG	9 cut(s)	38, 67, 280, 364, 370, 437, 516, 545, 785
CviQI	GTAC	5 cut(s)	376, 598, 683, 750, 769
DdeI	CTNAG	2 cut(s)	8, 642
DpnI	GATC	4 cut(s)	6, 276, 393, 533
DpnII	GATC	4 cut(s)	4, 274, 391, 531
EciI	GGCGGA	1 cut(s)	524
Eco105I	TACGTA	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	323, 728
Eco147I	AGGCCT	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	785
Eco91I	GGTNACC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	473
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	394, 469
EcoT14I	CCWWGG	2 cut(s)	323, 728
ErhI	CCWWGG	2 cut(s)	323, 728
FaeI	CATG	9 cut(s)	41, 70, 283, 367, 373, 440, 519, 548, 788
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	2 cut(s)	157, 539
FatI	CATG	9 cut(s)	37, 66, 279, 363, 369, 436, 515, 544, 784
FauI	CCCGC	1 cut(s)	698
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	4 cut(s)	405, 591, 674, 723
FokI	GGATG	2 cut(s)	83, 770
Fsp4HI	GCNGC	4 cut(s)	405, 591, 674, 723
GluI	GCNGC	4 cut(s)	405, 591, 674, 723
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	475, 660, 676
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	9 cut(s)	41, 70, 283, 367, 373, 440, 519, 548, 788
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	89, 457
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	7 cut(s)	35, 98, 164, 455, 536, 616, 749
Hpy166II	GTNNAC	4 cut(s)	349, 426, 446, 481
Hpy188I	TCNGA	1 cut(s)	645
Hpy188III	TCNNGA	5 cut(s)	10, 180, 454, 545, 571
Hpy8I	GTNNAC	4 cut(s)	349, 426, 446, 481
HpyAV	CCTTC	2 cut(s)	460, 640
HpyCH4III	ACNGT	2 cut(s)	83, 511
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	593, 638, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	666
HpyF3I	CTNAG	2 cut(s)	8, 642
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	9 cut(s)	41, 70, 283, 367, 373, 440, 519, 548, 788
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	4, 274, 391, 531
LmnI	GCTCC	2 cut(s)	244, 698
Lsp1109I	GCAGC	3 cut(s)	391, 577, 709
LweI	GCATC	1 cut(s)	630
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	3 cut(s)	188, 256, 415
MalI	GATC	4 cut(s)	6, 276, 393, 533
MbiI	CCGCTC	1 cut(s)	693
MboI	GATC	4 cut(s)	4, 274, 391, 531
MboII	GAAGA	1 cut(s)	224
MflI	RGATCY	2 cut(s)	4, 531
MluCI	AATT	4 cut(s)	243, 290, 399, 791
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	19, 151, 506
MslI	CAYNNNNRTG	4 cut(s)	71, 368, 441, 543
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	3 cut(s)	396, 471, 488
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	2 cut(s)	396, 471
MwoI	GCNNNNNNNGC	1 cut(s)	666
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	4 cut(s)	4, 274, 391, 531
NlaIII	CATG	9 cut(s)	41, 70, 283, 367, 373, 440, 519, 548, 788
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	788
PagI	TCATGA	1 cut(s)	544
PasI	CCCWGGG	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	660
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	2 cut(s)	394, 486
PkrI	GCNGC	4 cut(s)	406, 592, 675, 724
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	394, 469
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	394, 469
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	473, 675
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	2 cut(s)	4, 531
RsaI	GTAC	5 cut(s)	377, 599, 684, 751, 770
RsaNI	GTAC	5 cut(s)	376, 598, 683, 750, 769
RseI	CAYNNNNRTG	4 cut(s)	71, 368, 441, 543
SatI	GCNGC	4 cut(s)	405, 591, 674, 723
Sau3AI	GATC	4 cut(s)	4, 274, 391, 531
Sau96I	GGNCC	2 cut(s)	473, 675
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	396, 471, 488
SetI	ASST	7 cut(s)	108, 162, 336, 361, 498, 730, 765
SfaNI	GCATC	1 cut(s)	630
SfcI	CTRYAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	4 cut(s)	71, 368, 441, 543
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
SnaBI	TACGTA	1 cut(s)	359
Sse9I	AATT	4 cut(s)	243, 290, 399, 791
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	3 cut(s)	535, 673, 691
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	394, 469, 486
StyI	CCWWGG	2 cut(s)	323, 728
TaaI	ACNGT	2 cut(s)	83, 511
TaiI	ACGT	1 cut(s)	361
TasI	AATT	4 cut(s)	243, 290, 399, 791
TatI	WGTACW	4 cut(s)	375, 597, 682, 768
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	2 cut(s)	88, 210
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	404, 590, 722
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	386, 533, 561
TspRI	CASTG	2 cut(s)	88, 210
XceI	RCATGY	1 cut(s)	788
XmiI	GTMKAC	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.