Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001940.1

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Reverse (-)

12120 .. 13613

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001940.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggagggtttccgggttatcttcatctcaagcataagggcaaactatggtcatgatatccccctcttgcaactctttgtcaagcatgaaacgcaggaccgtttgagggtgcacataactgatgctaagaaacagaggtgggaggttccgtacaatctcctacctagagaacagcctcgaaacctaaacaaatcactgcaaggtcaacaaagatcaaagcttcagagcattctggctctaaacccatttggtgcaatggtttttaagcaccagtaccttgaaatctccaccaagttgcccaaagatgcatccctatatggcattggagagagcacacagaaacatgggttcaggctccatcctaatgatcctcatactctgttcaccgctgatattgcaactttcaatctcaacactgatttgtatggctcccacccagtttatatggatctcaggaatgtgggtggtgaggcttatgctgatgctgttctgttgctcaacattaatggcatggatgtgttttacagtggtgattctttgacatataaggttatttggggtgtgtttgatttctacttctttgctgggactactccattggaggttgttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

204

Amino Acids

23.28

Weight (kDa)

7.11

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	387
AclWI	GGATC	2 cut(s)	362, 456
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	152, 275
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	281, 406
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw21I	GWGCWC	2 cut(s)	114, 335
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	362, 456
ApaLI	GTGCAC	1 cut(s)	110
AseI	ATTAAT	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	376, 479, 542
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	114, 335
BccI	CCATC	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	14
BfaI	CTAG	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	3 cut(s)	147, 356, 430
BmrFI	CCNGG	1 cut(s)	14
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	4 cut(s)	112, 295, 317, 472
BmuI	ACTGGG	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	271, 437
Bse3DI	GCAATG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	308, 358, 520
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	466
BseNI	ACTGG	2 cut(s)	271, 437
BseSI	GKGCMC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	114, 335
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	114, 335
Bsp143I	GATC	3 cut(s)	212, 367, 448
BspACI	CCGC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	147, 356, 430
BspPI	GGATC	2 cut(s)	362, 456
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	271, 437
BssMI	GATC	3 cut(s)	212, 367, 448
Bst4CI	ACNGT	2 cut(s)	101, 527
BstDEI	CTNAG	2 cut(s)	126, 452
BstF5I	GGATG	3 cut(s)	308, 358, 520
BstKTI	GATC	3 cut(s)	215, 370, 451
BstMBI	GATC	3 cut(s)	212, 367, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 395
BstSCI	CCNGG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	308, 358, 520
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	3 cut(s)	194, 414, 532
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	151, 274
CviAII	CATG	4 cut(s)	53, 86, 344, 511
CviJI	RGCY	6 cut(s)	175, 220, 236, 355, 429, 473
CviKI_1	RGCY	6 cut(s)	175, 220, 236, 355, 429, 473
CviQI	GTAC	2 cut(s)	151, 274
DdeI	CTNAG	2 cut(s)	126, 452
DpnI	GATC	3 cut(s)	214, 369, 450
DpnII	GATC	3 cut(s)	212, 367, 448
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	4 cut(s)	56, 89, 347, 514
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	4 cut(s)	52, 85, 343, 510
FokI	GGATG	3 cut(s)	295, 345, 527
FspBI	CTAG	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	588
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	4 cut(s)	56, 89, 347, 514
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	376, 479, 542
Hpy166II	GTNNAC	3 cut(s)	112, 206, 384
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	53, 454
Hpy8I	GTNNAC	3 cut(s)	112, 206, 384
HpyCH4III	ACNGT	2 cut(s)	101, 527
HpyCH4V	TGCA	6 cut(s)	70, 112, 199, 254, 308, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 395
HpyF3I	CTNAG	2 cut(s)	126, 452
Hsp92II	CATG	4 cut(s)	56, 89, 347, 514
Kzo9I	GATC	3 cut(s)	212, 367, 448
LmnI	GCTCC	2 cut(s)	360, 434
LpnPI	CCDG	8 cut(s)	26, 80, 218, 284, 337, 439, 450, 570
LweI	GCATC	4 cut(s)	112, 295, 317, 472
MaeI	CTAG	1 cut(s)	165
MalI	GATC	3 cut(s)	214, 369, 450
MboI	GATC	3 cut(s)	212, 367, 448
MboII	GAAGA	1 cut(s)	13
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	114, 335
MnlI	CCTC	8 cut(s)	74, 99, 129, 136, 186, 381, 463, 595
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	2 cut(s)	264, 504
MslI	CAYNNNNRTG	2 cut(s)	363, 515
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	91, 395
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	3 cut(s)	212, 367, 448
NlaIII	CATG	4 cut(s)	56, 89, 347, 514
NlaIV	GGNNCC	3 cut(s)	147, 356, 430
NsiI	ATGCAT	1 cut(s)	310
PagI	TCATGA	1 cut(s)	52
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	533
PshBI	ATTAAT	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	147, 356, 430
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	2 cut(s)	152, 275
RsaNI	GTAC	2 cut(s)	151, 274
RseI	CAYNNNNRTG	2 cut(s)	363, 515
SaqAI	TTAA	2 cut(s)	264, 504
Sau3AI	GATC	3 cut(s)	212, 367, 448
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	114, 335
SetI	ASST	9 cut(s)	140, 147, 166, 186, 205, 222, 279, 552, 606
SfaNI	GCATC	4 cut(s)	112, 295, 317, 472
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	363, 515
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	101, 527
TaqI	TCGA	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	264, 504
Tru9I	TTAA	2 cut(s)	264, 504
TscAI	CASTG	3 cut(s)	201, 421, 532
TspDTI	ATGAA	2 cut(s)	13, 102
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	201, 421, 532
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	504
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.