Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Reverse (-)

57247655 .. 57253857

Gene Structure 6203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTCAGAAGCAGCGGTGGGAGGTGCCGTACAACCTCTTACAGAGAGCCAGCCTCCGAGCAGCCTCCGTCGCTGAAGCAGACCATTGGGAGGTCAAAGGATCCCATAACAGTCTCCGAGTACTCAAGCTCGGAGCTCGTCTTCAGCTACTCCGCAGACCCGTTCGGGTTTGTGGTGAAGCGAAAGTCAGACAAGCAAGTACTGTTCAACACTAGCTCAGATTCTTCAGACCCTTATGGGGAGATGGTGTTCAAGGACCAGTATCTTGAGATCTCCACAAAACTTCCCAAAGATGCATCCCTCTACGGGTTGGGAGAGAACTCCCAGCCCCATGGGATCAAGCTCTTCCCAAATGAACCTTATACCCTCTACACCACTGATGTCTCTGCTATCAATCTCAACACTGATTTGTATGGCTCCCACCCAGTTTACATGGATCTGAGGAATGTGGGTGGTGAGGCTTATGCTCATGCTGTTCTGTTGCTCAACAGTAATGGCATGGATGTGTTTTACAGAGGCAATTCTTTGACATATAAGGTCATTGGGGGTGTCTTTGATTTCTACTTCTTTTCTGGGACTAGTCCACTGGCTGTGGTTGACCAGTACACTTCTTTCATTGGCAGACCAGCTCCAATGCCTTACTGGTCTCTAGAAGGGTCTGTTGATGGTAATGTTGAAAGCCATTCCAGTCGGAACTTAATGCTCTCTGATCTCCATACATCACTGCCACGCCCTTTGAAAATGACAACCGATTCCACCAATGTAGATGGGGTTACCACAATTTATCAGTGGTTGAAGATGTTGTTGCTAATTATGAAAAGGCTGAAAAGGCTCAGATGTCATGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

283

Amino Acids

31.68

Weight (kDa)

6.6

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gal_mutarotas_2	PF13802	19 - 164	1.2e-10	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AciI	CCGC	2 cut(s)	15, 153
AclWI	GGATC	4 cut(s)	95, 108, 344, 444
AcuI	CTGAAG	3 cut(s)	95, 127, 210
AfaI	GTAC	4 cut(s)	31, 122, 201, 605
AfiI	CCNNNNNNNGG	3 cut(s)	90, 238, 306
AgsI	TTSAA	5 cut(s)	208, 253, 677, 739, 796
AhlI	ACTAGT	1 cut(s)	578
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	6 cut(s)	129, 136, 147, 216, 343, 629
AluI	AGCT	6 cut(s)	129, 136, 147, 216, 343, 629
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	3 cut(s)	118, 388, 651
AlwI	GGATC	4 cut(s)	95, 108, 344, 444
ApeKI	GCWGC	2 cut(s)	12, 61
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	187, 467
AvaII	GGWCC	1 cut(s)	256
BamHI	GGATCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	24, 73
BccI	CCATC	3 cut(s)	238, 659, 761
BceAI	ACGGC	1 cut(s)	12
BcoDI	GTCTC	3 cut(s)	118, 388, 651
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	3 cut(s)	213, 579, 650
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	13, 62
BlsI	GCNGC	2 cut(s)	14, 63
BmcAI	AGTACT	2 cut(s)	122, 201
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	26, 102, 418
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	283, 305
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpuEI	CTTGAG	2 cut(s)	109, 287
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 238, 306
Bse1I	ACTGG	6 cut(s)	259, 425, 591, 601, 647, 687
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	296, 508
BseLI	CCNNNNNNNGG	3 cut(s)	90, 238, 306
BseMII	CTCAG	4 cut(s)	19, 231, 431, 847
BseNI	ACTGG	6 cut(s)	259, 425, 591, 601, 647, 687
BseXI	GCAGC	2 cut(s)	24, 73
BseYI	CCCAGC	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	3 cut(s)	90, 238, 306
BsmAI	GTCTC	3 cut(s)	118, 388, 651
BsmFI	GGGAC	1 cut(s)	589
Bso31I	GGTCTC	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	100, 270, 336, 436, 709
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	2 cut(s)	15, 153
BspCNI	CTCAG	4 cut(s)	18, 230, 432, 846
BspLI	GGNNCC	3 cut(s)	26, 102, 418
BspPI	GGATC	4 cut(s)	95, 108, 344, 444
BspQI	GCTCTTC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	651
BsrI	ACTGG	6 cut(s)	259, 425, 591, 601, 647, 687
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	5 cut(s)	100, 270, 336, 436, 709
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	112, 204, 491
Bst6I	CTCTTC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	5, 217, 440, 833
BstDSI	CCRYGG	1 cut(s)	331
BstEII	GGTNACC	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	296, 508
BstKTI	GATC	5 cut(s)	103, 273, 339, 439, 712
BstMAI	GTCTC	3 cut(s)	118, 388, 651
BstMBI	GATC	5 cut(s)	100, 270, 336, 436, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 829
BstPI	GGTNACC	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	24, 73
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	3 cut(s)	100, 270, 436
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	3 cut(s)	100, 270, 436
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	296, 508
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	5 cut(s)	375, 402, 584, 722, 794
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	4 cut(s)	30, 121, 200, 604
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	5 cut(s)	332, 433, 470, 499, 842
CviQI	GTAC	4 cut(s)	30, 121, 200, 604
DdeI	CTNAG	4 cut(s)	5, 217, 440, 833
DpnI	GATC	5 cut(s)	102, 272, 338, 438, 711
DpnII	GATC	5 cut(s)	100, 270, 336, 436, 709
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	3 cut(s)	95, 127, 210
Eco91I	GGTNACC	1 cut(s)	772
EcoICRI	GAGCTC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	772
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	5 cut(s)	335, 436, 473, 502, 845
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	5 cut(s)	331, 432, 469, 498, 841
Fnu4HI	GCNGC	2 cut(s)	13, 62
FokI	GGATG	2 cut(s)	283, 515
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	13, 62
FspBI	CTAG	3 cut(s)	213, 579, 650
GluI	GCNGC	2 cut(s)	13, 62
GsaI	CCCAGC	1 cut(s)	328
Hin1II	CATG	5 cut(s)	335, 436, 473, 502, 845
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	221, 752
HphI	GGTGA	2 cut(s)	187, 467
Hpy166II	GTNNAC	5 cut(s)	430, 584, 598, 606, 847
Hpy188III	TCNNGA	2 cut(s)	266, 650
Hpy8I	GTNNAC	5 cut(s)	430, 584, 598, 606, 847
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	3 cut(s)	112, 204, 491
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 829
HpyF3I	CTNAG	4 cut(s)	5, 217, 440, 833
Hsp92II	CATG	5 cut(s)	335, 436, 473, 502, 845
Kzo9I	GATC	5 cut(s)	100, 270, 336, 436, 709
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	3 cut(s)	133, 422, 634
Lsp1109I	GCAGC	2 cut(s)	24, 73
LweI	GCATC	2 cut(s)	283, 305
MaeI	CTAG	3 cut(s)	213, 579, 650
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	5 cut(s)	102, 272, 338, 438, 711
MboI	GATC	5 cut(s)	100, 270, 336, 436, 709
MboII	GAAGA	4 cut(s)	133, 216, 337, 808
MflI	RGATCY	3 cut(s)	100, 270, 436
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	520, 780, 810
MmeI	TCCRAC	1 cut(s)	671
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	70, 829
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	5 cut(s)	100, 270, 336, 436, 709
NlaIII	CATG	5 cut(s)	335, 436, 473, 502, 845
NlaIV	GGNNCC	3 cut(s)	26, 102, 418
NsiI	ATGCAT	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	221, 752
PkrI	GCNGC	2 cut(s)	14, 63
Psp124BI	GAGCTC	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	772
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	26, 102, 418
PspPI	GGNCC	1 cut(s)	256
PsuI	RGATCY	3 cut(s)	100, 270, 436
RsaI	GTAC	4 cut(s)	31, 122, 201, 605
RsaNI	GTAC	4 cut(s)	30, 121, 200, 604
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	2 cut(s)	13, 62
Sau3AI	GATC	5 cut(s)	100, 270, 336, 436, 709
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	2 cut(s)	122, 201
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	283, 305
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	124, 266
SmoI	CTYRAG	2 cut(s)	124, 266
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	3 cut(s)	520, 780, 810
SsiI	CCGC	2 cut(s)	15, 153
SspMI	CTAG	3 cut(s)	213, 579, 650
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	112, 204, 491
TasI	AATT	3 cut(s)	520, 780, 810
TatI	WGTACW	3 cut(s)	120, 199, 603
TfiI	GAWTC	2 cut(s)	221, 752
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	5 cut(s)	382, 409, 591, 729, 794
TseI	GCWGC	2 cut(s)	12, 61
TspDTI	ATGAA	3 cut(s)	369, 604, 830
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	5 cut(s)	382, 409, 591, 729, 794
VpaK11BI	GGWCC	1 cut(s)	256
XbaI	TCTAGA	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	639
XspI	CTAG	3 cut(s)	213, 579, 650
ZrmI	AGTACT	2 cut(s)	122, 201
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.