Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000357.1

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Forward (+)

17569 .. 18647

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000357.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgaaacgcacaattggagaatgtacggaggctttgccctcctcacctctgccaaccacccttggttaccatcccttgctcatgacttccgtcggagctccggagttgaatctgctatggtggctgcaagttggagatgaagaagaagctttgattaagatttgggttttttgggctgctttggcctttctgcatgaaacgcaggaccgtttgagggtgcacataactgatgctaagaaacagaggtgggaggttccgtacaatctcctacctagtgaacagcctcgaaaacctaaacaaatcactgcaaggtcaacaaagatcaaagcttcagagcattctggctctaagttagtcttcagttacaccacagacacatttgggtttgctgtcaagagaaaatcagatgaccaagttttcttcaattccagctctgatccttcagacccatttggtgcaatggtttttaagcaacagtaccttgaaatctccaccaagttgcccaaagatgcatccctatatggcattggagagagcacacagaaacatgggttcaggctccatcctaatgatcctcatactctgttcaccgctgatattgcaactttcaatctcaacactgatttgtatggctcccacccagtttatatggatctcaggaatgtgggtggtgaggcttatgctgatgctgttctgttgctcaacattaatggcatggatgtgtttgacagtggtgattctttgacatataaggctatttggggtgtgtttgatttctacttctttgctgggactactccattggaggttgttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

272

Amino Acids

30.55

Weight (kDa)

5.6

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	3 cut(s)	431, 566, 660
AcuI	CTGAAG	3 cut(s)	315, 343, 426
AfaI	GTAC	3 cut(s)	25, 260, 479
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	109, 424, 485, 610
AluBI	AGCT	4 cut(s)	98, 149, 329, 432
AluI	AGCT	4 cut(s)	98, 149, 329, 432
Alw21I	GWGCWC	3 cut(s)	100, 222, 539
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	3 cut(s)	431, 566, 660
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	124, 176
AseI	ATTAAT	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	4 cut(s)	36, 580, 683, 746
AvaII	GGWCC	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	3 cut(s)	100, 222, 539
BbvI	GCAGC	2 cut(s)	111, 163
BccI	CCATC	2 cut(s)	78, 570
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	2 cut(s)	125, 177
BlsI	GCNGC	2 cut(s)	126, 178
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	3 cut(s)	255, 560, 634
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	4 cut(s)	220, 499, 521, 676
BmuI	ACTGGG	1 cut(s)	635
BoxI	GACNNNNGTC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	4 cut(s)	70, 512, 562, 724
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	670
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	111, 163
BseYI	CCCAGC	1 cut(s)	788
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	3 cut(s)	100, 222, 539
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	100, 222, 539
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	4 cut(s)	321, 436, 571, 652
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	669
BspEI	TCCGGA	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	255, 560, 634
BspPI	GGATC	3 cut(s)	431, 566, 660
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	4 cut(s)	321, 436, 571, 652
BssT1I	CCWWGG	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	209, 477, 731
BstDEI	CTNAG	3 cut(s)	234, 348, 656
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	4 cut(s)	70, 512, 562, 724
BstKTI	GATC	4 cut(s)	324, 439, 574, 655
BstMBI	GATC	4 cut(s)	321, 436, 571, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 182, 199, 599
BstPAI	GACNNNNGTC	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	111, 163
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	4 cut(s)	70, 512, 562, 724
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	303, 618, 736
CciI	TCATGA	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	24, 259, 478
CviAII	CATG	4 cut(s)	82, 194, 548, 715
CviQI	GTAC	3 cut(s)	24, 259, 478
DdeI	CTNAG	3 cut(s)	234, 348, 656
DpnI	GATC	4 cut(s)	323, 438, 573, 654
DpnII	GATC	4 cut(s)	321, 436, 571, 652
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	3 cut(s)	315, 343, 426
Eco91I	GGTNACC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	4 cut(s)	85, 197, 551, 718
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	4 cut(s)	81, 193, 547, 714
Fnu4HI	GCNGC	2 cut(s)	125, 177
FokI	GGATG	4 cut(s)	57, 499, 549, 731
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	125, 177
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	125, 177
GsaI	CCCAGC	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	4 cut(s)	85, 197, 551, 718
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HindIII	AAGCTT	2 cut(s)	147, 327
HinfI	GANTC	2 cut(s)	109, 737
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	4 cut(s)	36, 580, 683, 746
Hpy166II	GTNNAC	4 cut(s)	220, 278, 315, 588
Hpy188I	TCNGA	5 cut(s)	95, 334, 406, 436, 445
Hpy188III	TCNNGA	4 cut(s)	82, 101, 394, 658
Hpy8I	GTNNAC	4 cut(s)	220, 278, 315, 588
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	3 cut(s)	209, 477, 731
HpyCH4V	TGCA	7 cut(s)	127, 193, 220, 308, 458, 512, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 182, 199, 599
HpyF3I	CTNAG	3 cut(s)	234, 348, 656
Hsp92II	CATG	4 cut(s)	85, 197, 551, 718
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	321, 436, 571, 652
LmnI	GCTCC	4 cut(s)	95, 103, 564, 638
LpnPI	CCDG	8 cut(s)	114, 188, 327, 442, 541, 643, 654, 774
Lsp1109I	GCAGC	2 cut(s)	111, 163
LweI	GCATC	4 cut(s)	220, 499, 521, 676
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	65, 362
MalI	GATC	4 cut(s)	323, 438, 573, 654
MboI	GATC	4 cut(s)	321, 436, 571, 652
MboII	GAAGA	4 cut(s)	152, 155, 349, 412
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	3 cut(s)	100, 222, 539
MluCI	AATT	2 cut(s)	12, 424
MmeI	TCCRAC	2 cut(s)	73, 112
Mph1103I	ATGCAT	1 cut(s)	514
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	3 cut(s)	156, 468, 708
MslI	CAYNNNNRTG	2 cut(s)	567, 719
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	4 cut(s)	121, 182, 199, 599
NdeII	GATC	4 cut(s)	321, 436, 571, 652
NlaIII	CATG	4 cut(s)	85, 197, 551, 718
NlaIV	GGNNCC	3 cut(s)	255, 560, 634
NsiI	ATGCAT	1 cut(s)	514
PagI	TCATGA	1 cut(s)	81
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	109, 737
PkrI	GCNGC	2 cut(s)	126, 178
PshAI	GACNNNNGTC	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	788
PspN4I	GGNNCC	3 cut(s)	255, 560, 634
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	3 cut(s)	25, 260, 479
RsaNI	GTAC	3 cut(s)	24, 259, 478
RseI	CAYNNNNRTG	2 cut(s)	567, 719
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	156, 468, 708
SatI	GCNGC	2 cut(s)	125, 177
Sau3AI	GATC	4 cut(s)	321, 436, 571, 652
Sau96I	GGNCC	1 cut(s)	205
SduI	GDGCHC	3 cut(s)	100, 222, 539
SfaNI	GCATC	4 cut(s)	220, 499, 521, 676
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	567, 719
Sse9I	AATT	2 cut(s)	12, 424
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	3 cut(s)	209, 477, 731
TaqI	TCGA	1 cut(s)	286
TasI	AATT	2 cut(s)	12, 424
TfiI	GAWTC	2 cut(s)	109, 737
Tru1I	TTAA	3 cut(s)	156, 468, 708
Tru9I	TTAA	3 cut(s)	156, 468, 708
TscAI	CASTG	3 cut(s)	310, 625, 736
TseI	GCWGC	2 cut(s)	124, 176
TspDTI	ATGAA	3 cut(s)	17, 153, 210
TspGWI	ACGGA	3 cut(s)	41, 79, 246
TspRI	CASTG	3 cut(s)	310, 625, 736
VneI	GTGCAC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	205
VspI	ATTAAT	1 cut(s)	708
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.