Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Reverse (-)

56503736 .. 56505444

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG342100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTCATGATATCCCCCTCTTGCAACTCTTTGTCAAATACGCATGAAACGCAGGACCGTTTGAGGGTGCACATAACTGATGCTGAGAAACAGAGGTGGGAGGTTCCGTACAATCTCCTACCTAGAGAACAGCCTCGAAAACCTAAACAAATCACTGCAAGGTCAACAAAGATCAAAGCTTCAGAGCATTCAGGCTCTAAGTTAGTCTTCAGTTACACCACAGACCCATTTGGGTTTGCTGTCAAGAGAAAATCAGATGACCAAGTTTTCTTCAATTCCAGCTCTGATCCTTCAGACCCATTTGGTGCAATGGTTTTTAAGCACCAGTACCTTGAAATCTCCACCAAGTTGCCCAAAGATGCATCCCTATATGGCATTGGAGAGAGCACACAGAAACATGGGTTCAGGCTCCATCCTAATGATCCTCATACTCTGTTCACCGCTGATATTGCAGCTTTCAATCTCAACACTGATTTGTATCAATTGTATGGCTCCCACCCAGTTTATATGGATCTCAGGAATGTGGGTGGTGAGGCTTATGCTCATGCAGTTCTGTTGCTCAACATTAATGGCATGGACTTTAACCCTCCTTTAATCCTCCATGTTTCTTGCTTGATGGATGCTTATAGTGCATTGCTGCCTGTTACCTGTTATAGGCTTTTTGCTCACAAGTCATTTAATGATAATGCTCCATTGCCTTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

235

Amino Acids

26.51

Weight (kDa)

7.18

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gal_mutarotas_2	PF13802	20 - 188	1e-11	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	3 cut(s)	281, 416, 519
AcuI	CTGAAG	3 cut(s)	165, 193, 276
AfaI	GTAC	2 cut(s)	110, 329
AfiI	CCNNNNNNNGG	2 cut(s)	64, 654
AgsI	TTSAA	3 cut(s)	274, 335, 460
AluBI	AGCT	3 cut(s)	179, 282, 455
AluI	AGCT	3 cut(s)	179, 282, 455
Alw21I	GWGCWC	2 cut(s)	72, 389
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	281, 416, 519
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	452, 637
AseI	ATTAAT	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	430, 542
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	72, 389
BbvI	GCAGC	2 cut(s)	464, 624
BccI	CCATC	2 cut(s)	420, 610
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	453, 638
BlsI	GCNGC	2 cut(s)	454, 639
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	105, 410, 493
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	4 cut(s)	70, 349, 371, 610
BmuI	ACTGGG	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 654
Bse1I	ACTGG	2 cut(s)	325, 500
Bse3DI	GCAATG	3 cut(s)	315, 632, 692
Bse8I	GATNNNNATC	1 cut(s)	477
BseGI	GGATG	3 cut(s)	362, 412, 625
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	64, 654
BseMI	GCAATG	3 cut(s)	315, 632, 692
BseMII	CTCAG	2 cut(s)	75, 529
BseNI	ACTGG	2 cut(s)	325, 500
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	464, 624
BsiHKAI	GWGCWC	2 cut(s)	72, 389
BslI	CCNNNNNNNGG	2 cut(s)	64, 654
BsmI	GAATGC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	72, 389
Bsp143I	GATC	4 cut(s)	171, 286, 421, 511
BspACI	CCGC	1 cut(s)	441
BspCNI	CTCAG	2 cut(s)	76, 528
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	105, 410, 493
BspPI	GGATC	3 cut(s)	281, 416, 519
BsrDI	GCAATG	3 cut(s)	315, 632, 692
BsrI	ACTGG	2 cut(s)	325, 500
BssMI	GATC	4 cut(s)	171, 286, 421, 511
Bst4CI	ACNGT	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	84, 198, 515
BstENI	CCTNNNNNAGG	1 cut(s)	652
BstF5I	GGATG	3 cut(s)	362, 412, 625
BstKTI	GATC	4 cut(s)	174, 289, 424, 514
BstMBI	GATC	4 cut(s)	171, 286, 421, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 449, 629
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	464, 624
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BtsCI	GGATG	3 cut(s)	362, 412, 625
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 468
CciI	TCATGA	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	109, 328
CviAII	CATG	6 cut(s)	7, 44, 398, 545, 574, 602
CviJI	RGCY	9 cut(s)	133, 179, 195, 282, 409, 455, 492, 536, 658
CviKI_1	RGCY	9 cut(s)	133, 179, 195, 282, 409, 455, 492, 536, 658
CviQI	GTAC	2 cut(s)	109, 328
DdeI	CTNAG	3 cut(s)	84, 198, 515
DpnI	GATC	4 cut(s)	173, 288, 423, 513
DpnII	GATC	4 cut(s)	171, 286, 421, 511
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	165, 193, 276
EcoNI	CCTNNNNNAGG	1 cut(s)	652
EcoRV	GATATC	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	364
FaeI	CATG	6 cut(s)	10, 47, 401, 548, 577, 605
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	6 cut(s)	6, 43, 397, 544, 573, 601
Fnu4HI	GCNGC	2 cut(s)	453, 638
FokI	GGATG	3 cut(s)	349, 399, 632
Fsp4HI	GCNGC	2 cut(s)	453, 638
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	453, 638
Hin1II	CATG	6 cut(s)	10, 47, 401, 548, 577, 605
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	177
HphI	GGTGA	2 cut(s)	430, 542
Hpy166II	GTNNAC	3 cut(s)	70, 165, 438
Hpy188I	TCNGA	4 cut(s)	184, 256, 286, 295
Hpy188III	TCNNGA	3 cut(s)	7, 244, 517
Hpy8I	GTNNAC	3 cut(s)	70, 165, 438
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	8 cut(s)	24, 70, 158, 308, 362, 452, 548, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 449, 629
HpyF3I	CTNAG	3 cut(s)	84, 198, 515
Hsp92II	CATG	6 cut(s)	10, 47, 401, 548, 577, 605
Kzo9I	GATC	4 cut(s)	171, 286, 421, 511
LmnI	GCTCC	3 cut(s)	414, 497, 694
LpnPI	CCDG	9 cut(s)	38, 177, 292, 338, 391, 502, 513, 654, 661
Lsp1109I	GCAGC	2 cut(s)	464, 624
LweI	GCATC	4 cut(s)	70, 349, 371, 610
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	212, 643
MalI	GATC	4 cut(s)	173, 288, 423, 513
MboI	GATC	4 cut(s)	171, 286, 421, 511
MboII	GAAGA	2 cut(s)	199, 262
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	72, 389
MluCI	AATT	2 cut(s)	274, 482
MnlI	CCTC	9 cut(s)	28, 57, 87, 94, 144, 435, 526, 597, 608
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	5 cut(s)	318, 567, 582, 593, 678
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	187
MwoI	GCNNNNNNNGC	3 cut(s)	49, 449, 629
NdeII	GATC	4 cut(s)	171, 286, 421, 511
NlaIII	CATG	6 cut(s)	10, 47, 401, 548, 577, 605
NlaIV	GGNNCC	3 cut(s)	105, 410, 493
NsiI	ATGCAT	1 cut(s)	364
PagI	TCATGA	1 cut(s)	6
PctI	GAATGC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	454, 639
PshBI	ATTAAT	1 cut(s)	567
PspN4I	GGNNCC	3 cut(s)	105, 410, 493
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	2 cut(s)	110, 329
RsaNI	GTAC	2 cut(s)	109, 328
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	318, 567, 582, 593, 678
SatI	GCNGC	2 cut(s)	453, 638
Sau3AI	GATC	4 cut(s)	171, 286, 421, 511
Sau96I	GGNCC	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	72, 389
SfaNI	GCATC	4 cut(s)	70, 349, 371, 610
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	274, 482
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	274, 482
Tru1I	TTAA	5 cut(s)	318, 567, 582, 593, 678
Tru9I	TTAA	5 cut(s)	318, 567, 582, 593, 678
TscAI	CASTG	2 cut(s)	160, 475
TseI	GCWGC	2 cut(s)	452, 637
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	160, 475
VneI	GTGCAC	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	567
XagI	CCTNNNNNAGG	1 cut(s)	652
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.