Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Reverse (-)

61950496 .. 61951710

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG362900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGGCAATTGTTCCGGCATGAAACGCAGGACCGTTTGAGGTTGCACATAATAACTGATGCTAAGAAACAGAGGTGGGAGGTTCCGTACAATCTCCTACCTAGAGAACAGCCTCGAAAACCTAAACAAATCACTGCAAGGTCAACAAAGATCAAAGCTTCAGAGCATTCTGGCTCTAAGTTAGTCTTCGGTTACACCACAGACCCATTTGGGTTTGTTGTCAAGAGAAAATCAGATGGCCAAGTTCTCTTCAATTCCAGCTCTGATCGTTCAGACCCATTTGGTGCAATGGTTTTTAAGCACCAATACCTTGAAATCTCCACCAAGTTGCCCAAAGATGCATCCCTATATGGCATTGGAGAGAGCACACAGAAACATGGGTTCGGGCTCCATCCTAATGATCCTCATACTCTGTTCACCGCTGATATTGCAGCTTTCAATCTCAACACTGATTTGTATGGCTCCCACCCAGTTTATATGGATCTCAGGAATGTGGATGGTGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

169

Amino Acids

19.29

Weight (kDa)

9.42

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gal_mutarotas_2	PF13802	21 - 163	2.8e-09	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	2 cut(s)	395, 489
AcoI	YGGCCR	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	253, 314, 439
AluBI	AGCT	3 cut(s)	158, 261, 434
AluI	AGCT	3 cut(s)	158, 261, 434
Alw21I	GWGCWC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	395, 489
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	230, 399, 491
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	3 cut(s)	84, 389, 463
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	3 cut(s)	49, 328, 350
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	341, 391, 502
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	499
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	368, 390
Bsp143I	GATC	4 cut(s)	150, 265, 400, 481
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	84, 389, 463
BspPI	GGATC	2 cut(s)	395, 489
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	470
BssMI	GATC	4 cut(s)	150, 265, 400, 481
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	63, 177, 485
BstF5I	GGATG	3 cut(s)	341, 391, 502
BstKTI	GATC	4 cut(s)	153, 268, 403, 484
BstMBI	GATC	4 cut(s)	150, 265, 400, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 428
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	341, 391, 502
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 447
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	20, 377
CviJI	RGCY	9 cut(s)	112, 158, 174, 240, 261, 388, 434, 462, 506
CviKI_1	RGCY	9 cut(s)	112, 158, 174, 240, 261, 388, 434, 462, 506
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	3 cut(s)	63, 177, 485
DpnI	GATC	4 cut(s)	152, 267, 402, 483
DpnII	GATC	4 cut(s)	150, 265, 400, 481
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	390
FaeI	CATG	2 cut(s)	23, 380
FaiI	YATR	9 cut(s)	21, 50, 349, 351, 378, 408, 459, 477, 479
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	2 cut(s)	19, 376
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	2 cut(s)	328, 378
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	2 cut(s)	23, 380
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	156
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	144, 417
Hpy188I	TCNGA	4 cut(s)	163, 235, 265, 274
Hpy188III	TCNNGA	2 cut(s)	223, 487
Hpy8I	GTNNAC	2 cut(s)	144, 417
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	46, 137, 287, 341, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 428
HpyF3I	CTNAG	3 cut(s)	63, 177, 485
Hsp92II	CATG	2 cut(s)	23, 380
Kzo9I	GATC	4 cut(s)	150, 265, 400, 481
LmnI	GCTCC	2 cut(s)	393, 467
LpnPI	CCDG	6 cut(s)	14, 29, 156, 271, 472, 483
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	3 cut(s)	49, 328, 350
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	4 cut(s)	152, 267, 402, 483
MboI	GATC	4 cut(s)	150, 265, 400, 481
MboII	GAAGA	2 cut(s)	178, 241
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	2 cut(s)	368, 390
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	2 cut(s)	8, 253
MluNI	TGGCCA	1 cut(s)	240
MnlI	CCTC	6 cut(s)	33, 66, 73, 123, 414, 496
Mox20I	TGGCCA	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	343
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	297, 508
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	25, 428
NdeII	GATC	4 cut(s)	150, 265, 400, 481
NlaIII	CATG	2 cut(s)	23, 380
NlaIV	GGNNCC	3 cut(s)	84, 389, 463
NsiI	ATGCAT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	84, 389, 463
PspPI	GGNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	297, 508
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	4 cut(s)	150, 265, 400, 481
Sau96I	GGNCC	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	368, 390
SfaNI	GCATC	3 cut(s)	49, 328, 350
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	396
Sse9I	AATT	2 cut(s)	8, 253
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	8, 253
Tru1I	TTAA	2 cut(s)	297, 508
Tru9I	TTAA	2 cut(s)	297, 508
TscAI	CASTG	2 cut(s)	139, 454
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	139, 454
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.