Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Forward (+)

11704794 .. 11705277

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G076500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCTATGCCACTGGAGCATGATTACATAGGCTTAACAGAGACTTCTTCAATGGAAAGAAGCTCTGAAAAGATTTCTTCTTCCTGGTCAGCCATAACAGTCTCAGAGTACTCTAGCTCTAAGCTGATCTTCAACAACATCTCAGACCCATTTGGGTTTGCAGTGAAGAGAAAGTCAGATGGCCAAGTTCTTTTCAACTCGAGCTCTGATCCTAAAGACCCATATGGTGAATTGGTGTTTAAGGACCAGTACCTGGAGATTTCGACGGTGTTTAAGGACCCGACCTCAGCTCAGTTGGTAGAGCAGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

4.54

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	181
AfaI	GTAC	2 cut(s)	110, 251
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	51, 133, 196
AjnI	CCWGG	2 cut(s)	83, 252
AluBI	AGCT	5 cut(s)	63, 117, 124, 204, 290
AluI	AGCT	5 cut(s)	63, 117, 124, 204, 290
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	35, 106
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	244, 277
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	244, 277
BalI	TGGCCA	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	85, 254
BcoDI	GTCTC	2 cut(s)	35, 106
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	2 cut(s)	85, 254
Bme18I	GGWCC	2 cut(s)	244, 277
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	244, 277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	85, 254
BpmI	CTGGAG	2 cut(s)	35, 275
Bpu10I	CCTNAGC	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	18, 247
BseBI	CCWGG	2 cut(s)	85, 254
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	4 cut(s)	117, 156, 300, 305
BseNI	ACTGG	2 cut(s)	18, 247
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	35, 106
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	126, 208
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	4 cut(s)	116, 155, 299, 304
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	18, 247
BssMI	GATC	2 cut(s)	126, 208
Bst2UI	CCWGG	2 cut(s)	85, 254
Bst4CI	ACNGT	2 cut(s)	100, 268
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	5 cut(s)	103, 120, 142, 286, 291
BstKTI	GATC	2 cut(s)	129, 211
BstMAI	GTCTC	2 cut(s)	35, 106
BstMBI	GATC	2 cut(s)	126, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	2 cut(s)	85, 254
BstSCI	CCNGG	2 cut(s)	83, 252
BsuRI	GGCC	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	11, 168
CaiI	CAGNNNCTG	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	244, 277
Csp6I	GTAC	2 cut(s)	109, 250
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	8 cut(s)	33, 63, 92, 117, 124, 183, 204, 290
CviKI_1	RGCY	8 cut(s)	33, 63, 92, 117, 124, 183, 204, 290
CviQI	GTAC	2 cut(s)	109, 250
DdeI	CTNAG	5 cut(s)	103, 120, 142, 286, 291
DpnI	GATC	2 cut(s)	128, 210
DpnII	GATC	2 cut(s)	126, 208
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	244, 277
Eco53kI	GAGCTC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	83, 252
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	1 cut(s)	23
FaiI	YATR	6 cut(s)	8, 21, 29, 95, 223, 225
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	2 cut(s)	35, 275
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	5 cut(s)	67, 106, 145, 178, 208
Hpy99I	CGWCG	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	100, 268
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	5 cut(s)	103, 120, 142, 286, 291
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	126, 208
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	6 cut(s)	70, 97, 239, 260, 266, 293
MaeI	CTAG	1 cut(s)	114
MalI	GATC	2 cut(s)	128, 210
MboI	GATC	2 cut(s)	126, 208
MboII	GAAGA	5 cut(s)	39, 69, 72, 121, 178
MhlI	GDGCHC	1 cut(s)	206
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	183
MnlI	CCTC	1 cut(s)	295
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	3 cut(s)	35, 240, 273
Msp20I	TGGCCA	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	85, 254
MvaI	CCWGG	2 cut(s)	85, 254
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	2 cut(s)	126, 208
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	83, 252
PspGI	CCWGG	2 cut(s)	83, 252
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	244, 277
PspPPI	RGGWCCY	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	110, 251
RsaNI	GTAC	2 cut(s)	109, 250
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	35, 240, 273
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	126, 208
Sau96I	GGNCC	2 cut(s)	244, 277
ScaI	AGTACT	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	85, 254
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	7 cut(s)	65, 119, 126, 206, 255, 287, 292
Sfr274I	CTCGAG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	244, 277
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	230
SspMI	CTAG	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	83, 252
TaaI	ACNGT	2 cut(s)	100, 268
TaqI	TCGA	2 cut(s)	200, 263
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	35, 240, 273
Tru9I	TTAA	3 cut(s)	35, 240, 273
TscAI	CASTG	2 cut(s)	18, 168
TseI	GCWGC	1 cut(s)	304
TspRI	CASTG	2 cut(s)	18, 168
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	244, 277
XhoI	CTCGAG	1 cut(s)	199
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.