RchiOBHm_Chr4g0435321

Belongs to the glycosyl hydrolase 31 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
58923999 .. 58926783
2785 bp
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UTR
Exon/CDS
Intron
PRQ40375

Sequence Viewer

Length: 1206 bp
ATGGGAGTTTGGCATGAAACGCAGGACCGTTTGAGGGTGCACATAACTGATGCTGAGAAACAGAGGTGGGAGGTTCCGTACAATCTCCTACCTAGAGAACAGCCTCGAAAACCTAAACAAATCACTGCAAGGTCAACAAAGATCAAAGCTTCAGAGCATTCTGGCTCTAAGTTAGTCTTCAGTTACACCACAGACCCATTTGGGTTTGCTGTCAAGAGAAAATCAGATGACCAAGTTTTCTTCAATTCCAGCTCTGATCCTTCAGACCCATTTGGTGCAATGGTTTTTAAGCACCAGTACATTGAAATCTCCACCAAGTTGCCCAAAGATGCATCCCTATATGGCATTGGAGAGAGCACACAGAAACATGGGTTCAGGCTCCATCCTAAGGATCCTCATACTCTGTTCACCGCGGATATTGCAGCTTTCAATCTCAACACTGATTTGTATCAATTGTATGGCTCCCACCCAGTTTATATGGATCTCAGGAATGTGGGTGGTGAGGCTTATGCTCATGCTGTTCTGTTGCTCAACATTAATGGCATGGATGTGTTTTACAGTGGTGATTCTTTGACATATAAGGTTATTTGGGGTGTGTTTGATTTCTACTTCTTTGCTGGGACTACTCCATTGGAGGTTGTTGATACTGGTATTAGTGGATTTCACCAATCCAGATGGGGTTACCAAAACTTATCAGTGGTTGAAGACATAGTTGAGAACTATCAAAAGGCTCCAATTCCATTAGATGTCATTTGGAATGATGATGATCACATGGACAGAAACTCAACCCCAGGAACTACCCTCGGACAAAGCTTTTGGCATTTAGGTATTGGCATTGCTAATGATGTTTTTATAAAGCATGAGGGTGAACCCTTCTTGACCCAAGTTGCACCAGGGCCTGTAACCTCCCGGACTACCTCAACCCCAAAACTGTGTCATGGCGGGGCGCCCATAGGGACCAGAATCATAGCCGCTAGTGCATATCACTATAATGGCATTTTAGAGTACAATGCTCACAATCTGTATGGCATCTCCGAAACCATTGCAACTCAGAAGGCTCTTGTAGGCCTTGATGGCAAGCGGCCCTTTGTACTATCCCGCTCCACTTATGTTGGTTCATGCAAGTATGCTGCACATTGGACTGGTGATAACAAGGGTACTTGGGATGACCTGAAGTACTCAAATCCCCAACATGCTCAATTTTGA

Protein Analysis

401

Amino Acids

44.96

Weight (kDa)

6.4

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gal_mutarotas_2 PF13802 11 - 170 1.5e-11 Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain
Glyco_hydro_31_2nd PF01055 220 - 261 4.5e-10 Glycosyl hydrolases family 31 TIM-barrel domain
Glyco_hydro_31_2nd PF01055 327 - 399 1.4e-19 Glycosyl hydrolases family 31 TIM-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 946
AccBSI CCGCTC 1 cut(s) 1101
AccII CGCG 1 cut(s) 413
AciI CCGC 6 cut(s) 411, 413, 942, 972, 1081, 1099
AclWI GGATC 4 cut(s) 251, 386, 399, 489
AcuI CTGAAG 4 cut(s) 135, 163, 246, 1193
AcyI GRCGYC 1 cut(s) 947
AfaI GTAC 6 cut(s) 80, 299, 1007, 1092, 1159, 1178
AfiI CCNNNNNNNGG 2 cut(s) 34, 388
AgsI TTSAA 4 cut(s) 244, 305, 430, 704
AjnI CCWGG 2 cut(s) 790, 892
AluBI AGCT 4 cut(s) 149, 252, 425, 813
AluI AGCT 4 cut(s) 149, 252, 425, 813
Alw21I GWGCWC 2 cut(s) 42, 359
Alw44I GTGCAC 1 cut(s) 38
AlwI GGATC 4 cut(s) 251, 386, 399, 489
AlwNI CAGNNNCTG 1 cut(s) 899
AoxI GGCC 3 cut(s) 896, 1066, 1082
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 422, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 798, 830
AseI ATTAAT 1 cut(s) 537
AspLEI GCGC 1 cut(s) 949
AspS9I GGNCC 4 cut(s) 25, 896, 957, 1083
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 6 cut(s) 400, 512, 575, 656, 878, 1157
AvaII GGWCC 2 cut(s) 25, 957
AxyI CCTNAGG 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 42
BamHI GGATCC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 946
BbsI GAAGAC 2 cut(s) 169, 711
Bbv12I GWGCWC 2 cut(s) 42, 359
BbvI GCAGC 2 cut(s) 434, 1117
BccI CCATC 3 cut(s) 390, 669, 1067
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 2 cut(s) 792, 894
BclI TGATCA 1 cut(s) 766
BcnI CCSGG 1 cut(s) 910
BfaI CTAG 2 cut(s) 93, 975
BfoI RGCGCY 1 cut(s) 950
BglI GCCNNNNNGGC 1 cut(s) 1074
BisI GCNGC 4 cut(s) 423, 972, 1082, 1131
BlsI GCNGC 4 cut(s) 424, 973, 1083, 1132
BmcAI AGTACT 1 cut(s) 1178
Bme1390I CCNGG 3 cut(s) 792, 894, 910
Bme18I GGWCC 2 cut(s) 25, 957
BmgT120I GGNCC 4 cut(s) 25, 896, 957, 1083
BmiI GGNNCC 7 cut(s) 75, 380, 393, 463, 732, 948, 958
BmrFI CCNGG 3 cut(s) 792, 894, 910
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 4 cut(s) 40, 319, 341, 1038
BmuI ACTGGG 1 cut(s) 464
BpiI GAAGAC 2 cut(s) 169, 711
BpuMI CCSGG 1 cut(s) 910
BsaBI GATNNNNATC 2 cut(s) 447, 765
BsaHI GRCGYC 1 cut(s) 947
BsaJI CCNNGG 4 cut(s) 411, 790, 802, 893
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 388
Bse1I ACTGG 4 cut(s) 295, 470, 652, 1147
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 3 cut(s) 285, 834, 1041
Bse8I GATNNNNATC 2 cut(s) 447, 765
BseBI CCWGG 2 cut(s) 792, 894
BseDI CCNNGG 4 cut(s) 411, 790, 802, 893
BseGI GGATG 4 cut(s) 332, 382, 553, 1171
BseJI GATNNNNATC 2 cut(s) 447, 765
BseLI CCNNNNNNNGG 2 cut(s) 34, 388
BseMI GCAATG 3 cut(s) 285, 834, 1041
BseMII CTCAG 3 cut(s) 45, 499, 1064
BseNI ACTGG 4 cut(s) 295, 470, 652, 1147
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 2 cut(s) 434, 1117
BseYI CCCAGC 1 cut(s) 617
BsgI GTGCAG 1 cut(s) 1116
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 3 cut(s) 898, 1068, 1084
BshNI GGYRCC 1 cut(s) 946
BsiHKAI GWGCWC 2 cut(s) 42, 359
BsiSI CCGG 1 cut(s) 910
BslFI GGGAC 2 cut(s) 634, 970
BslI CCNNNNNNNGG 2 cut(s) 34, 388
BsmFI GGGAC 2 cut(s) 634, 970
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 3 cut(s) 898, 1068, 1084
Bsp1286I GDGCHC 2 cut(s) 42, 359
Bsp143I GATC 5 cut(s) 141, 256, 391, 481, 766
BspACI CCGC 6 cut(s) 411, 413, 942, 972, 1081, 1099
BspANI GGCC 3 cut(s) 898, 1068, 1084
BspCNI CTCAG 3 cut(s) 46, 498, 1063
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 7 cut(s) 75, 380, 393, 463, 732, 948, 958
BspPI GGATC 4 cut(s) 251, 386, 399, 489
BspT107I GGYRCC 1 cut(s) 946
BsrBI CCGCTC 1 cut(s) 1101
BsrDI GCAATG 3 cut(s) 285, 834, 1041
BsrI ACTGG 4 cut(s) 295, 470, 652, 1147
BssECI CCNNGG 4 cut(s) 411, 790, 802, 893
BssMI GATC 5 cut(s) 141, 256, 391, 481, 766
BssNI GRCGYC 1 cut(s) 947
Bst2UI CCWGG 2 cut(s) 792, 894
Bst4CI ACNGT 3 cut(s) 29, 560, 933
BstACI GRCGYC 1 cut(s) 947
BstC8I GCNNGC 1 cut(s) 1079
BstDEI CTNAG 5 cut(s) 54, 168, 387, 485, 1050
BstDSI CCRYGG 1 cut(s) 411
BstEII GGTNACC 1 cut(s) 680
BstF5I GGATG 4 cut(s) 332, 382, 553, 1171
BstFNI CGCG 1 cut(s) 413
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 1 cut(s) 949
BstKTI GATC 5 cut(s) 144, 259, 394, 484, 769
BstMBI GATC 5 cut(s) 141, 256, 391, 481, 766
BstMWI GCNNNNNNNGC 4 cut(s) 19, 419, 977, 1074
BstNI CCWGG 2 cut(s) 792, 894
BstNSI RCATGY 1 cut(s) 1196
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 790, 892, 908
BstSLI GKGCMC 1 cut(s) 42
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 434, 1117
BstV2I GAAGAC 2 cut(s) 169, 711
BstX2I RGATCY 2 cut(s) 391, 481
BstYI RGATCY 2 cut(s) 391, 481
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 3 cut(s) 898, 1068, 1084
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 4 cut(s) 332, 382, 553, 1171
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 4 cut(s) 123, 438, 565, 702
Cac8I GCNNGC 1 cut(s) 1079
CaiI CAGNNNCTG 1 cut(s) 899
CfoI GCGC 1 cut(s) 949
Cfr13I GGNCC 4 cut(s) 25, 896, 957, 1083
Cfr42I CCGCGG 1 cut(s) 414
Csp6I GTAC 6 cut(s) 79, 298, 1006, 1091, 1158, 1177
CspCI CAANNNNNGTGG 2 cut(s) 1093, 1128
CviAII CATG 9 cut(s) 14, 368, 515, 544, 772, 860, 938, 1119, 1193
CviQI GTAC 6 cut(s) 79, 298, 1006, 1091, 1158, 1177
DdeI CTNAG 5 cut(s) 54, 168, 387, 485, 1050
DinI GGCGCC 1 cut(s) 948
DpnI GATC 5 cut(s) 143, 258, 393, 483, 768
DpnII GATC 5 cut(s) 141, 256, 391, 481, 766
Eco147I AGGCCT 1 cut(s) 1068
Eco47I GGWCC 2 cut(s) 25, 957
Eco57I CTGAAG 4 cut(s) 135, 163, 246, 1193
Eco81I CCTNAGG 1 cut(s) 387
Eco91I GGTNACC 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 896
EcoO65I GGTNACC 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 790, 892
EcoT22I ATGCAT 1 cut(s) 334
EgeI GGCGCC 1 cut(s) 948
EheI GGCGCC 1 cut(s) 948
FaeI CATG 9 cut(s) 17, 371, 518, 547, 775, 863, 941, 1122, 1196
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 1070, 1102
FaqI GGGAC 2 cut(s) 634, 970
FatI CATG 9 cut(s) 13, 367, 514, 543, 771, 859, 937, 1118, 1192
FauI CCCGC 2 cut(s) 935, 1106
FbaI TGATCA 1 cut(s) 766
Fnu4HI GCNGC 4 cut(s) 423, 972, 1082, 1131
FokI GGATG 4 cut(s) 319, 369, 560, 1178
Fsp4HI GCNGC 4 cut(s) 423, 972, 1082, 1131
FspBI CTAG 2 cut(s) 93, 975
GlaI GCGC 1 cut(s) 948
GluI GCNGC 4 cut(s) 423, 972, 1082, 1131
GsaI CCCAGC 1 cut(s) 621
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 3 cut(s) 898, 1068, 1084
HapII CCGG 1 cut(s) 910
HhaI GCGC 1 cut(s) 949
Hin1I GRCGYC 1 cut(s) 947
Hin1II CATG 9 cut(s) 17, 371, 518, 547, 775, 863, 941, 1122, 1196
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 2 cut(s) 147, 811
HinfI GANTC 2 cut(s) 566, 963
HpaII CCGG 1 cut(s) 910
HphI GGTGA 6 cut(s) 400, 512, 575, 656, 878, 1157
Hpy166II GTNNAC 4 cut(s) 40, 135, 408, 869
Hpy188I TCNGA 7 cut(s) 154, 226, 256, 265, 806, 1036, 1053
Hpy188III TCNNGA 4 cut(s) 214, 487, 672, 877
Hpy8I GTNNAC 4 cut(s) 40, 135, 408, 869
HpyAV CCTTC 3 cut(s) 270, 883, 1048
HpyCH4III ACNGT 3 cut(s) 29, 560, 933
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 419, 977, 1074
HpyF3I CTNAG 5 cut(s) 54, 168, 387, 485, 1050
Hsp92I GRCGYC 1 cut(s) 947
Hsp92II CATG 9 cut(s) 17, 371, 518, 547, 775, 863, 941, 1122, 1196
HspAI GCGC 1 cut(s) 947
KasI GGCGCC 1 cut(s) 946
Ksp22I TGATCA 1 cut(s) 766
KspI CCGCGG 1 cut(s) 414
Kzo9I GATC 5 cut(s) 141, 256, 391, 481, 766
LmnI GCTCC 4 cut(s) 384, 467, 736, 1106
Lsp1109I GCAGC 2 cut(s) 434, 1117
LweI GCATC 4 cut(s) 40, 319, 341, 1038
MaeI CTAG 2 cut(s) 93, 975
MaeIII GTNAC 3 cut(s) 182, 680, 901
MalI GATC 5 cut(s) 143, 258, 393, 483, 768
MbiI CCGCTC 1 cut(s) 1101
MboI GATC 5 cut(s) 141, 256, 391, 481, 766
MboII GAAGA 3 cut(s) 169, 232, 716
MfeI CAATTG 1 cut(s) 452
MflI RGATCY 2 cut(s) 391, 481
MhlI GDGCHC 2 cut(s) 42, 359
MluCI AATT 4 cut(s) 244, 452, 735, 1199
Mly113I GGCGCC 1 cut(s) 947
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 2 cut(s) 288, 537
MslI CAYNNNNRTG 3 cut(s) 548, 864, 990
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 1 cut(s) 910
MspR9I CCNGG 3 cut(s) 792, 894, 910
MunI CAATTG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 2 cut(s) 792, 894
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 4 cut(s) 19, 419, 977, 1074
NarI GGCGCC 1 cut(s) 947
NciI CCSGG 1 cut(s) 910
NdeII GATC 5 cut(s) 141, 256, 391, 481, 766
NlaIII CATG 9 cut(s) 17, 371, 518, 547, 775, 863, 941, 1122, 1196
NlaIV GGNNCC 7 cut(s) 75, 380, 393, 463, 732, 948, 958
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 1196
PceI AGGCCT 1 cut(s) 1068
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 566, 963
PfoI TCCNGGA 1 cut(s) 908
PkrI GCNGC 4 cut(s) 424, 973, 1083, 1132
PluTI GGCGCC 1 cut(s) 950
PshBI ATTAAT 1 cut(s) 537
PsiI TTATAA 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 790, 892
PspEI GGTNACC 1 cut(s) 680
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 790, 892
PspN4I GGNNCC 7 cut(s) 75, 380, 393, 463, 732, 948, 958
PspPI GGNCC 4 cut(s) 25, 896, 957, 1083
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 2 cut(s) 391, 481
RsaI GTAC 6 cut(s) 80, 299, 1007, 1092, 1159, 1178
RsaNI GTAC 6 cut(s) 79, 298, 1006, 1091, 1158, 1177
RseI CAYNNNNRTG 3 cut(s) 548, 864, 990
SacII CCGCGG 1 cut(s) 414
SaqAI TTAA 2 cut(s) 288, 537
SatI GCNGC 4 cut(s) 423, 972, 1082, 1131
Sau3AI GATC 5 cut(s) 141, 256, 391, 481, 766
Sau96I GGNCC 4 cut(s) 25, 896, 957, 1083
ScaI AGTACT 1 cut(s) 1178
ScrFI CCNGG 3 cut(s) 792, 894, 910
SduI GDGCHC 2 cut(s) 42, 359
SfaNI GCATC 4 cut(s) 40, 319, 341, 1038
SfoI GGCGCC 1 cut(s) 948
Sfr303I CCGCGG 1 cut(s) 414
SgrBI CCGCGG 1 cut(s) 414
SinI GGWCC 2 cut(s) 25, 957
SmiMI CAYNNNNRTG 3 cut(s) 548, 864, 990
Sse9I AATT 4 cut(s) 244, 452, 735, 1199
SseBI AGGCCT 1 cut(s) 1068
SsiI CCGC 6 cut(s) 411, 413, 942, 972, 1081, 1099
SspDI GGCGCC 1 cut(s) 946
SspMI CTAG 2 cut(s) 93, 975
StuI AGGCCT 1 cut(s) 1068
StyD4I CCNGG 3 cut(s) 790, 892, 908
TaaI ACNGT 3 cut(s) 29, 560, 933
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 244, 452, 735, 1199
TatI WGTACW 4 cut(s) 297, 1005, 1090, 1176
TauI GCSGC 2 cut(s) 974, 1084
TfiI GAWTC 2 cut(s) 566, 963
Tru1I TTAA 2 cut(s) 288, 537
Tru9I TTAA 2 cut(s) 288, 537
TscAI CASTG 4 cut(s) 130, 445, 565, 702
TseI GCWGC 2 cut(s) 422, 1130
TspDTI ATGAA 2 cut(s) 30, 1107
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 4 cut(s) 130, 445, 565, 702
VneI GTGCAC 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 25, 957
VspI ATTAAT 1 cut(s) 537
XceI RCATGY 1 cut(s) 1196
XspI CTAG 2 cut(s) 93, 975
ZrmI AGTACT 1 cut(s) 1178
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.