Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Forward (+)

45732898 .. 45738294

Gene Structure 5397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGTCCACCGGTCAACTGTTTTCCCGGACCACTCAAGCCTTGTTCTACAACTACAAGCAGCTCCCCATCCAGCGCATGCTTGATTTTGACTTCCTTTGTGGGAGGGAAACACCGTCTGTTGCCGGAATCATTAATCCCGGTGCTGAGGGATTTCAGAAGCTCTTTTTCGGTCAGGAGGAAATCGCCATACCAGTGCACTCCAGCATTGAGGCATCATGTGCCGCACATCCCACTGCCGATGTATTTATCAACTTTGCTTCCTACAGAAGTGCTGCTGCTTCTTCCATGACTGCTCTCAAGCAGCCAACCATCAGAGTTGTGGCAATTATTGCTGAGGGTGTGCCTGAGTCAGACGCTAAGCAATTGATCGCATATGCACGGGCAAACAACAAGGTTGTCATTGGCCCAGCTACTGTTGGAGGAATCCAAGCTGGAGCTTTTAAGATTGGTGACACTGCCGGAACAATTGATAACATTATTCATTGCAAGCTGTACAGGCCCGGATCTGTTGGTTTTGTCTCCAAATCTGGTGGGATGTCCAATGAAATGTACAATACTGTAGCCCGTGTAACAGATGGACTTTATGAAGGTATTGCTATTGGAGGTGATGTGTTCCCAGGTTCTACTCTCTCGGACCATGTTCTGCGATTTAACAATATCCCTCAGGTTAAAATTATTGTTGTACTTGGGGAACTTGGTGGGAGAGATGAGTATTCTCTAGTTGAAGCTTTAAAACAGGGAAAAGTTAACAAACCAGTGGTTGCTTGGGTTAGTGGAACTTGTGCAACGCTTTTCAAATCCGAAGTACAATTTGGACATGCTGGCGCTAAAAGTGGTGGTGAGATGGAGTCTGCACAAGCAAAGAACCAAGCCCTGAGGGACGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTCTAGAAACTGCCATCAAGGAAACCTTTGAGAAATTGGTTGAAGAGGGGAAAATTGCACCAGTGAAGGAATTTAAGCCTCCACAGATTCCTGAAGATCTTAACACCGCAATTAAGAGTGGAAAAGTTAGGGCTCCAACTCATGTTATATCCACAATCTCTGATGATAGAGGTGAGGAACCATGCTATGCTGGTGTACCTATGTCTTCCATTGTTGAGCAGGGTTATGGTGTAGGTGATGTTATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCCAGTTACTGTACCAAATTTATTGAGATATGCGTCATGTTGTGTGCTGACCATGGTCCTTGCGTCTCTGGTGCTCACAACACAATCGTAACCGCTAGGGCTGGCAAGGACCTTGTTTCCAGCCTTGTCTCAGGTTTGCTCACAATTGGTCCACGATTTGGTGGTGCCGTTGATGATGCTGCTCGATACTTCAAGGATGCATATGACAAGAATCTTACACCATATGAGTTTGTCGAAAGCATGAAAAAGAAGGGCATTCGTGTGCCAGGGATTGGTCACAGGATTAAGAGAGGAGACAACCGAGATAAGAGAGTAGAGCTCCTACAACTGTTCGCACGCACACATTTCCCTTCCGTCAAGTACATGGAATACGCCGTACAAGTTGAGACCTACACGCTCTCAAAGGCAAACAACCTGGTCATGAATGTGGATGGTGCTATTGGAACCTTGTTCTTGGATCTCCTTGCGGGCAGTGGAATGTTCAACAAGCCAGAGATTGATGAGATTGTGGAGATTGGCTATCTGAATGGGCTGTTTGTGTTGGCACGTTCCATTGGTTTGATTGGGCACACATTTGACCAGAAGAGGTTGAAGCAGCCCCTGTACCGCCACCCATGGGAGGATGTTCTTTACACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

608

Amino Acids

65.91

Weight (kDa)

7.17

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Succ_CoA_lig	PF13607	167 - 309	3.1e-06	Succinyl-CoA ligase like flavodoxin domain
Ligase_CoA	PF00549	173 - 298	2e-19	CoA-ligase
Citrate_synt	PF00285	400 - 597	9.5e-17	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1349
AccB7I	CCANNNNNTGG	2 cut(s)	1343, 1457
AciI	CCGC	5 cut(s)	222, 1020, 1278, 1652, 1792
AclWI	GGATC	2 cut(s)	511, 1650
AcsI	RAATTY	2 cut(s)	983, 1202
AcuI	CTGAAG	1 cut(s)	1026
AdeI	CACNNNGTG	1 cut(s)	1824
AfaI	GTAC	9 cut(s)	494, 551, 684, 807, 1110, 1198, 1547, 1563, 1790
AfiI	CCNNNNNNNGG	4 cut(s)	1343, 1457, 1801, 1804
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	7 cut(s)	725, 796, 956, 1174, 1378, 1669, 1777
AjnI	CCWGG	3 cut(s)	616, 1450, 1599
AjuI	GAANNNNNNNTTGG	2 cut(s)	795, 827
AloI	GAACNNNNNNTCC	2 cut(s)	879, 911
Alw21I	GWGCWC	3 cut(s)	198, 1261, 1506
Alw26I	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	511, 1650
AlwNI	CAGNNNCTG	3 cut(s)	413, 1194, 1786
AoxI	GGCC	2 cut(s)	403, 497
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	7 cut(s)	58, 272, 275, 301, 1179, 1364, 1780
ApoI	RAATTY	2 cut(s)	983, 1202
AseI	ATTAAT	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	75, 827
AspS9I	GGNCC	7 cut(s)	27, 404, 498, 634, 1241, 1294, 1334
AsuC2I	CCSGG	3 cut(s)	25, 138, 501
AsuHPI	GGTGA	5 cut(s)	461, 617, 851, 1097, 1160
AvaII	GGWCC	5 cut(s)	27, 634, 1241, 1294, 1334
AxyI	CCTNAGG	2 cut(s)	663, 875
BaeGI	GKGCMC	2 cut(s)	198, 1755
BanI	GGYRCC	1 cut(s)	1349
BanII	GRGCYC	2 cut(s)	1048, 1506
BbsI	GAAGAC	1 cut(s)	1110
Bbv12I	GWGCWC	3 cut(s)	198, 1261, 1506
BbvCI	CCTCAGC	2 cut(s)	144, 333
BbvI	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
BccI	CCATC	6 cut(s)	74, 317, 569, 838, 935, 1610
BceAI	ACGGC	2 cut(s)	1337, 1544
BciT130I	CCWGG	3 cut(s)	618, 1452, 1601
BcnI	CCSGG	3 cut(s)	25, 138, 501
BcoDI	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
BfaI	CTAG	3 cut(s)	719, 917, 1281
BfmI	CTRYAG	2 cut(s)	262, 558
BfoI	RGCGCY	1 cut(s)	828
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	8 cut(s)	60, 223, 274, 277, 303, 1181, 1366, 1782
Bme1390I	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
Bme18I	GGWCC	5 cut(s)	27, 634, 1241, 1294, 1334
BmgT120I	GGNCC	7 cut(s)	27, 404, 498, 634, 1241, 1294, 1334
BmiI	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
BmrFI	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
BmrI	ACTGGG	1 cut(s)	1182
BmsI	GCATC	3 cut(s)	221, 1351, 1372
BmuI	ACTGGG	1 cut(s)	1182
BoxI	GACNNNNGTC	1 cut(s)	1239
BpiI	GAAGAC	1 cut(s)	1110
BplI	GAGNNNNNCTC	2 cut(s)	1488, 1520
BpmI	CTGGAG	3 cut(s)	184, 453, 906
Bpu10I	CCTNAGC	2 cut(s)	144, 333
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	18, 281
BpuMI	CCSGG	3 cut(s)	25, 138, 501
BsaI	GGTCTC	1 cut(s)	1565
BsaJI	CCNNGG	4 cut(s)	616, 1237, 1451, 1799
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	4 cut(s)	594, 624, 879, 909
Bsc4I	CCNNNNNNNGG	4 cut(s)	1343, 1457, 1801, 1804
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	4 cut(s)	191, 755, 974, 1188
Bse21I	CCTNAGG	2 cut(s)	663, 875
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	3 cut(s)	618, 1452, 1601
BseDI	CCNNGG	4 cut(s)	616, 1237, 1451, 1799
BseGI	GGATG	6 cut(s)	66, 226, 540, 1387, 1621, 1813
BseLI	CCNNNNNNNGG	4 cut(s)	1343, 1457, 1801, 1804
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	6 cut(s)	135, 324, 336, 677, 866, 1329
BseNI	ACTGG	4 cut(s)	191, 755, 974, 1188
BseRI	GAGGAG	1 cut(s)	1491
BseSI	GKGCMC	2 cut(s)	198, 1755
BseXI	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	405, 499
BshNI	GGYRCC	1 cut(s)	1349
BshTI	ACCGGT	1 cut(s)	8
BsiHKAI	GWGCWC	3 cut(s)	198, 1261, 1506
BsiSI	CCGG	6 cut(s)	9, 25, 123, 138, 459, 501
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	4 cut(s)	1343, 1457, 1801, 1804
BsmAI	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
BsmBI	CGTCTC	1 cut(s)	1255
BsmFI	GGGAC	1 cut(s)	893
BsmI	GAATGC	1 cut(s)	1440
BsnI	GGCC	2 cut(s)	405, 499
Bso31I	GGTCTC	1 cut(s)	1565
Bsp1286I	GDGCHC	5 cut(s)	198, 1048, 1261, 1506, 1755
Bsp1407I	TGTACA	2 cut(s)	492, 549
Bsp143I	GATC	4 cut(s)	366, 503, 1009, 1642
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	2 cut(s)	1237, 1799
BspACI	CCGC	5 cut(s)	222, 1020, 1278, 1652, 1792
BspANI	GGCC	2 cut(s)	405, 499
BspCNI	CTCAG	6 cut(s)	136, 325, 337, 676, 867, 1328
BspHI	TCATGA	1 cut(s)	1605
BspLI	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
BspPI	GGATC	2 cut(s)	511, 1650
BspT107I	GGYRCC	1 cut(s)	1349
BspTNI	GGTCTC	1 cut(s)	1565
BsrDI	GCAATG	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	2 cut(s)	492, 549
BsrI	ACTGG	4 cut(s)	191, 755, 974, 1188
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	4 cut(s)	616, 1237, 1451, 1799
BssMI	GATC	4 cut(s)	366, 503, 1009, 1642
BssT1I	CCWWGG	2 cut(s)	1237, 1799
Bst2UI	CCWGG	3 cut(s)	618, 1452, 1601
Bst4CI	ACNGT	6 cut(s)	18, 114, 415, 559, 1196, 1515
Bst6I	CTCTTC	2 cut(s)	951, 1763
BstAPI	GCANNNNNTGC	2 cut(s)	218, 329
BstAUI	TGTACA	2 cut(s)	492, 549
BstC8I	GCNNGC	6 cut(s)	77, 488, 823, 1288, 1522, 1654
BstDEI	CTNAG	7 cut(s)	144, 333, 345, 357, 663, 875, 1315
BstDSI	CCRYGG	2 cut(s)	1237, 1799
BstF5I	GGATG	6 cut(s)	66, 226, 540, 1387, 1621, 1813
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	2 cut(s)	75, 827
BstKTI	GATC	4 cut(s)	369, 506, 1012, 1645
BstMAI	GTCTC	5 cut(s)	523, 1255, 1318, 1473, 1565
BstMBI	GATC	4 cut(s)	366, 503, 1009, 1642
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 329, 496
BstNI	CCWGG	3 cut(s)	618, 1452, 1601
BstNSI	RCATGY	2 cut(s)	79, 821
BstPAI	GACNNNNGTC	1 cut(s)	1239
BstSCI	CCNGG	6 cut(s)	23, 136, 499, 616, 1450, 1599
BstSFI	CTRYAG	2 cut(s)	262, 558
BstSLI	GKGCMC	2 cut(s)	198, 1755
BstV1I	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
BstV2I	GAAGAC	1 cut(s)	1110
BstX2I	RGATCY	3 cut(s)	503, 1009, 1642
BstYI	RGATCY	3 cut(s)	503, 1009, 1642
Bsu36I	CCTNAGG	2 cut(s)	663, 875
BsuRI	GGCC	2 cut(s)	405, 499
BtgI	CCRYGG	2 cut(s)	1237, 1799
BtsCI	GGATG	6 cut(s)	66, 226, 540, 1387, 1621, 1813
BtsI	GCAGTG	3 cut(s)	231, 453, 1663
BtsIMutI	CAGTG	6 cut(s)	198, 231, 453, 762, 981, 1663
Cac8I	GCNNGC	6 cut(s)	77, 488, 823, 1288, 1522, 1654
CaiI	CAGNNNCTG	3 cut(s)	413, 1194, 1786
CciI	TCATGA	1 cut(s)	1605
CfoI	GCGC	2 cut(s)	75, 827
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	7 cut(s)	27, 404, 498, 634, 1241, 1294, 1334
CseI	GACGC	4 cut(s)	362, 890, 1207, 1237
CsiI	ACCWGGT	1 cut(s)	1599
Csp6I	GTAC	9 cut(s)	493, 550, 683, 806, 1109, 1197, 1546, 1562, 1789
CspAI	ACCGGT	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviQI	GTAC	9 cut(s)	493, 550, 683, 806, 1109, 1197, 1546, 1562, 1789
DdeI	CTNAG	7 cut(s)	144, 333, 345, 357, 663, 875, 1315
DpnI	GATC	4 cut(s)	368, 505, 1011, 1644
DpnII	GATC	4 cut(s)	366, 503, 1009, 1642
DraI	TTTAAA	1 cut(s)	732
DraIII	CACNNNGTG	1 cut(s)	1824
Eam1104I	CTCTTC	2 cut(s)	951, 1763
EarI	CTCTTC	2 cut(s)	951, 1763
Ecl136II	GAGCTC	1 cut(s)	1504
Eco130I	CCWWGG	2 cut(s)	1237, 1799
Eco24I	GRGCYC	2 cut(s)	1048, 1506
Eco31I	GGTCTC	1 cut(s)	1565
Eco47I	GGWCC	5 cut(s)	27, 634, 1241, 1294, 1334
Eco53kI	GAGCTC	1 cut(s)	1504
Eco57I	CTGAAG	1 cut(s)	1026
Eco81I	CCTNAGG	2 cut(s)	663, 875
EcoICRI	GAGCTC	1 cut(s)	1504
EcoO109I	RGGNCCY	1 cut(s)	1294
EcoRII	CCWGG	3 cut(s)	616, 1450, 1599
EcoT14I	CCWWGG	2 cut(s)	1237, 1799
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	2 cut(s)	1048, 1506
ErhI	CCWWGG	2 cut(s)	1237, 1799
Esp3I	CGTCTC	1 cut(s)	1255
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FaqI	GGGAC	1 cut(s)	893
FauI	CCCGC	1 cut(s)	1645
FauNDI	CATATG	4 cut(s)	373, 907, 1387, 1408
Fnu4HI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
FokI	GGATG	6 cut(s)	53, 213, 547, 1394, 1628, 1820
FriOI	GRGCYC	2 cut(s)	1048, 1506
Fsp4HI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
FspBI	CTAG	3 cut(s)	719, 917, 1281
GlaI	GCGC	2 cut(s)	74, 826
GluI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	3 cut(s)	184, 453, 906
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	2 cut(s)	405, 499
HapII	CCGG	6 cut(s)	9, 25, 123, 138, 459, 501
HgaI	GACGC	4 cut(s)	362, 890, 1207, 1237
HhaI	GCGC	2 cut(s)	75, 827
Hin6I	GCGC	2 cut(s)	73, 825
HinP1I	GCGC	2 cut(s)	73, 825
HincII	GTYRAC	2 cut(s)	14, 748
HindII	GTYRAC	2 cut(s)	14, 748
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	6 cut(s)	126, 347, 423, 848, 1000, 1396
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	6 cut(s)	9, 25, 123, 138, 459, 501
HphI	GGTGA	5 cut(s)	461, 617, 851, 1097, 1160
Hpy166II	GTNNAC	6 cut(s)	6, 14, 196, 748, 1109, 1337
Hpy188I	TCNGA	7 cut(s)	156, 314, 352, 634, 802, 1075, 1710
Hpy188III	TCNNGA	4 cut(s)	173, 917, 1004, 1606
Hpy8I	GTNNAC	6 cut(s)	6, 14, 196, 748, 1109, 1337
HpyAV	CCTTC	5 cut(s)	581, 973, 1193, 1429, 1545
HpyCH4III	ACNGT	6 cut(s)	18, 114, 415, 559, 1196, 1515
HpyCH4IV	ACGT	1 cut(s)	1732
HpyCH4V	TGCA	7 cut(s)	196, 377, 486, 785, 854, 971, 1385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 329, 496
HpyF3I	CTNAG	7 cut(s)	144, 333, 345, 357, 663, 875, 1315
HpySE526I	ACGT	1 cut(s)	1732
HspAI	GCGC	2 cut(s)	73, 825
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	4 cut(s)	366, 503, 1009, 1642
LmnI	GCTCC	5 cut(s)	66, 434, 887, 1051, 1509
Lsp1109I	GCAGC	7 cut(s)	70, 259, 262, 313, 1191, 1351, 1792
LweI	GCATC	3 cut(s)	221, 1351, 1372
MabI	ACCWGGT	1 cut(s)	1599
MaeI	CTAG	3 cut(s)	719, 917, 1281
MaeII	ACGT	1 cut(s)	1732
MaeIII	GTNAC	5 cut(s)	449, 568, 1190, 1273, 1460
MalI	GATC	4 cut(s)	368, 505, 1011, 1644
MboI	GATC	4 cut(s)	366, 503, 1009, 1642
MboII	GAAGA	5 cut(s)	273, 968, 1019, 1110, 1780
MfeI	CAATTG	3 cut(s)	362, 465, 1329
MflI	RGATCY	3 cut(s)	503, 1009, 1642
MhlI	GDGCHC	5 cut(s)	198, 1048, 1261, 1506, 1755
MlyI	GAGTC	2 cut(s)	356, 857
MmeI	TCCRAC	2 cut(s)	397, 1073
Mph1103I	ATGCAT	1 cut(s)	1387
MslI	CAYNNNNRTG	3 cut(s)	191, 1445, 1610
MspI	CCGG	6 cut(s)	9, 25, 123, 138, 459, 501
MspR9I	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
MunI	CAATTG	3 cut(s)	362, 465, 1329
Mva1269I	GAATGC	1 cut(s)	1440
MvaI	CCWGG	3 cut(s)	618, 1452, 1601
MwoI	GCNNNNNNNGC	3 cut(s)	218, 329, 496
NciI	CCSGG	3 cut(s)	25, 138, 501
NcoI	CCATGG	2 cut(s)	1237, 1799
NdeI	CATATG	4 cut(s)	373, 907, 1387, 1408
NdeII	GATC	4 cut(s)	366, 503, 1009, 1642
NlaIV	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
NmuCI	GTSAC	2 cut(s)	449, 1460
NsiI	ATGCAT	1 cut(s)	1387
NspI	RCATGY	2 cut(s)	79, 821
PaeI	GCATGC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	1605
PctI	GAATGC	1 cut(s)	1440
PfeI	GAWTC	4 cut(s)	126, 423, 1000, 1396
PflMI	CCANNNNNTGG	2 cut(s)	1343, 1457
PfoI	TCCNGGA	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	8 cut(s)	60, 223, 274, 277, 303, 1181, 1366, 1782
PleI	GAGTC	2 cut(s)	355, 856
PpsI	GAGTC	2 cut(s)	355, 856
PpuMI	RGGWCCY	1 cut(s)	1294
PshAI	GACNNNNGTC	1 cut(s)	1239
PshBI	ATTAAT	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	1506
Psp5II	RGGWCCY	1 cut(s)	1294
Psp6I	CCWGG	3 cut(s)	616, 1450, 1599
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	3 cut(s)	616, 1450, 1599
PspN4I	GGNNCC	4 cut(s)	1047, 1092, 1351, 1630
PspPI	GGNCC	7 cut(s)	27, 404, 498, 634, 1241, 1294, 1334
PspPPI	RGGWCCY	1 cut(s)	1294
PstNI	CAGNNNCTG	3 cut(s)	413, 1194, 1786
PsuI	RGATCY	3 cut(s)	503, 1009, 1642
RsaI	GTAC	9 cut(s)	494, 551, 684, 807, 1110, 1198, 1547, 1563, 1790
RsaNI	GTAC	9 cut(s)	493, 550, 683, 806, 1109, 1197, 1546, 1562, 1789
RseI	CAYNNNNRTG	3 cut(s)	191, 1445, 1610
SacI	GAGCTC	1 cut(s)	1506
SatI	GCNGC	8 cut(s)	59, 222, 273, 276, 302, 1180, 1365, 1781
Sau3AI	GATC	4 cut(s)	366, 503, 1009, 1642
Sau96I	GGNCC	7 cut(s)	27, 404, 498, 634, 1241, 1294, 1334
SchI	GAGTC	2 cut(s)	356, 857
ScrFI	CCNGG	6 cut(s)	25, 138, 501, 618, 1452, 1601
SduI	GDGCHC	5 cut(s)	198, 1048, 1261, 1506, 1755
SexAI	ACCWGGT	1 cut(s)	1599
SfaNI	GCATC	3 cut(s)	221, 1351, 1372
SfcI	CTRYAG	2 cut(s)	262, 558
SinI	GGWCC	5 cut(s)	27, 634, 1241, 1294, 1334
SmiMI	CAYNNNNRTG	3 cut(s)	191, 1445, 1610
SmlI	CTYRAG	2 cut(s)	33, 296
SmoI	CTYRAG	2 cut(s)	33, 296
SphI	GCATGC	1 cut(s)	79
SsiI	CCGC	5 cut(s)	222, 1020, 1278, 1652, 1792
SspMI	CTAG	3 cut(s)	719, 917, 1281
SstI	GAGCTC	1 cut(s)	1506
StyD4I	CCNGG	6 cut(s)	23, 136, 499, 616, 1450, 1599
StyI	CCWWGG	2 cut(s)	1237, 1799
TaaI	ACNGT	6 cut(s)	18, 114, 415, 559, 1196, 1515
TaiI	ACGT	1 cut(s)	1735
TaqI	TCGA	2 cut(s)	1369, 1419
TaqII	GACCGA	1 cut(s)	158
TatI	WGTACW	5 cut(s)	492, 549, 682, 805, 1545
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	4 cut(s)	126, 423, 1000, 1396
TscAI	CASTG	6 cut(s)	198, 238, 460, 762, 981, 1663
TseFI	GTSAC	2 cut(s)	449, 1460
TseI	GCWGC	7 cut(s)	58, 272, 275, 301, 1179, 1364, 1780
Tsp45I	GTSAC	2 cut(s)	449, 1460
TspDTI	ATGAA	7 cut(s)	470, 558, 600, 894, 924, 1442, 1622
TspGWI	ACGGA	1 cut(s)	1528
TspRI	CASTG	6 cut(s)	198, 238, 460, 762, 981, 1663
Van91I	CCANNNNNTGG	2 cut(s)	1343, 1457
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	5 cut(s)	27, 634, 1241, 1294, 1334
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	2 cut(s)	983, 1202
XbaI	TCTAGA	1 cut(s)	916
XceI	RCATGY	2 cut(s)	79, 821
XcmI	CCANNNNNNNNNTGG	2 cut(s)	316, 762
XspI	CTAG	3 cut(s)	719, 917, 1281
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.