Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Forward (+)

27691735 .. 27692733

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCAAGGCCTTCATTGAATCAACGAAAACACGAGTCCAAGCAGTCGTCTAAGAGACGAGAATTTCATGCTCATAATGAAGATAACAAAGTGTTGACAAGAAAAGTCCGGATAATGTTTAACGACCCCGATGCTACTGATTCTTCATCCTCGAGCGAAGATGAAACGATGGAGACTGCACAGTATGAGAAGAAAAAATCATTAAAAAAATCAAAAAGGTTTGTACAGGAAGTCATTCATTCTTTCTTCATGCATTCAGGGAGGGCAATTGGTTGTGAAGCACCACCAGAGACTAGAACGACTATAACTAGCTCAGGAAGAAAGCGATTCTCGTCTTCACCTTTCAGAGGTGTAAGGCAAAGAAAATATGGTAAATGGGCTGCTGAGATTCGAGATCCTATCAAAGGTGGCCGACTTTGGTTGGGTACGTACGCCACTGCCGAGGAAGCTTCCCAGGCTTACGAGACCATGAGGTGTAAGTTCGATGAAATTTTGAGGGCCTCTACAACCAGTATTTCTGACAAAAACAACAAAGATGACAAGAGTAATTCTGACCACGAACACCTATTTCTTTTAAGAAAAGCAACTCCAATAACAGCTTCCAACTCTGGTGGCAACGGCCTTTTGTCCCATAAGGGATCTCCGGTTGCGGTTCTTGATTTGGGAAAGAATGCCGATTCAGACAAGGAAACCATTGGCACTAATAATGTTGGACAACTGCGGATACCATTGGACTTGAGTTTCCTGGATGAAGCATTGCAGTCTCTCCCCATCGATCAGCAACAGCTAGACGTCTTCAACTTTGTACCAGATGATGAGGAGCTTGACAAACTTGCCTCCTCCATTGCCTCCTCCTCTTTAGAGGAACTTGGTAAGTATTTTGACGGAATGTATTGTAGCATTGATGATATAAAGATCGGTGGAGTTGATGATGATAACCCCACCAATCTTCCTGACTGTGACGACTTATTGACGATATATTCTAATAGTTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

332

Amino Acids

37.1

Weight (kDa)

5.83

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	115 - 162	1.1e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	795
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	2 cut(s)	650, 721
AclWI	GGATC	2 cut(s)	389, 646
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	2 cut(s)	62, 489
AcyI	GRCGYC	1 cut(s)	792
AfaI	GTAC	4 cut(s)	225, 427, 431, 807
AfiI	CCNNNNNNNGG	2 cut(s)	347, 404
AgsI	TTSAA	3 cut(s)	19, 799, 993
AjnI	CCWGG	2 cut(s)	453, 744
AjuI	GAANNNNNNNTTGG	2 cut(s)	583, 615
AluBI	AGCT	5 cut(s)	312, 449, 599, 787, 823
AluI	AGCT	5 cut(s)	312, 449, 599, 787, 823
Alw26I	GTCTC	5 cut(s)	49, 167, 284, 458, 768
AlwI	GGATC	2 cut(s)	389, 646
Ama87I	CYCGRG	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	4 cut(s)	8, 409, 498, 619
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	62, 489
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	498
AsuHPI	GGTGA	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	151
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	327, 787
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	163, 779
BceAI	ACGGC	1 cut(s)	634
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	2 cut(s)	455, 746
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	5 cut(s)	49, 167, 284, 458, 768
BfaI	CTAG	3 cut(s)	294, 309, 788
BfuI	GTATCC	1 cut(s)	717
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	455, 746
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	498
BmrFI	CCNGG	2 cut(s)	455, 746
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	2 cut(s)	327, 787
Bpu10I	CCTNAGC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	757
Bsa29I	ATCGAT	1 cut(s)	774
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	441, 453
BsaWI	WCCGGW	2 cut(s)	108, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 404
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	755, 843
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	455, 746
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	441, 453
BseGI	GGATG	2 cut(s)	146, 754
BseLI	CCNNNNNNNGG	2 cut(s)	347, 404
BseMI	GCAATG	2 cut(s)	755, 843
BseMII	CTCAG	2 cut(s)	327, 375
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	4 cut(s)	829, 833, 841, 844
BseXI	GCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	10, 411, 500, 621
BshVI	ATCGAT	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	109, 644
BsiWI	CGTACG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	347, 404
BsmAI	GTCTC	5 cut(s)	49, 167, 284, 458, 768
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	2 cut(s)	253, 676
BsnI	GGCC	4 cut(s)	10, 411, 500, 621
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	151
Bsp13I	TCCGGA	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	394, 638, 775, 915
BspACI	CCGC	2 cut(s)	650, 721
BspANI	GGCC	4 cut(s)	10, 411, 500, 621
BspCNI	CTCAG	2 cut(s)	326, 376
BspDI	ATCGAT	1 cut(s)	774
BspEI	TCCGGA	1 cut(s)	108
BspPI	GGATC	2 cut(s)	389, 646
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	755, 843
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	441, 453
BssMI	GATC	4 cut(s)	394, 638, 775, 915
BssNI	GRCGYC	1 cut(s)	792
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	455, 746
Bst4CI	ACNGT	2 cut(s)	183, 959
BstACI	GRCGYC	1 cut(s)	792
BstAUI	TGTACA	1 cut(s)	223
BstBAI	YACGTR	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	51, 313, 384
BstENI	CCTNNNNNAGG	2 cut(s)	345, 402
BstF5I	GGATG	2 cut(s)	146, 754
BstKTI	GATC	4 cut(s)	397, 641, 778, 918
BstMAI	GTCTC	5 cut(s)	49, 167, 284, 458, 768
BstMBI	GATC	4 cut(s)	394, 638, 775, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 455
BstNI	CCWGG	2 cut(s)	455, 746
BstSCI	CCNGG	2 cut(s)	453, 744
BstSNI	TACGTA	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	2 cut(s)	327, 787
BstX2I	RGATCY	2 cut(s)	394, 638
BstYI	RGATCY	2 cut(s)	394, 638
Bsu15I	ATCGAT	1 cut(s)	774
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	4 cut(s)	10, 411, 500, 621
BsuTUI	ATCGAT	1 cut(s)	774
BtsCI	GGATG	2 cut(s)	146, 754
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	498
ClaI	ATCGAT	1 cut(s)	774
Csp6I	GTAC	4 cut(s)	224, 426, 430, 806
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	3 cut(s)	68, 250, 469
CviQI	GTAC	4 cut(s)	224, 426, 430, 806
DdeI	CTNAG	3 cut(s)	51, 313, 384
DpnI	GATC	4 cut(s)	396, 640, 777, 917
DpnII	GATC	4 cut(s)	394, 638, 775, 915
EaeI	YGGCCR	1 cut(s)	409
Eco105I	TACGTA	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	151
EcoNI	CCTNNNNNAGG	2 cut(s)	345, 402
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	453, 744
EcoT22I	ATGCAT	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	3 cut(s)	71, 253, 472
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	3 cut(s)	67, 249, 468
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	133, 761
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	294, 309, 788
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	10, 411, 500, 621
HapII	CCGG	2 cut(s)	109, 644
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	3 cut(s)	71, 253, 472
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	6 cut(s)	19, 35, 140, 327, 388, 677
HpaII	CCGG	2 cut(s)	109, 644
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	4 cut(s)	347, 520, 553, 682
Hpy188III	TCNNGA	5 cut(s)	109, 315, 392, 656, 953
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	183, 959
HpyCH4IV	ACGT	2 cut(s)	428, 792
HpyCH4V	TGCA	3 cut(s)	179, 253, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 455
HpyF3I	CTNAG	3 cut(s)	51, 313, 384
HpySE526I	ACGT	2 cut(s)	428, 792
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	3 cut(s)	71, 253, 472
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	394, 638, 775, 915
LmnI	GCTCC	1 cut(s)	820
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	3 cut(s)	294, 309, 788
MaeII	ACGT	2 cut(s)	428, 792
MaeIII	GTNAC	1 cut(s)	959
MalI	GATC	4 cut(s)	396, 640, 777, 917
MboI	GATC	4 cut(s)	394, 638, 775, 915
MboII	GAAGA	9 cut(s)	92, 135, 170, 202, 238, 327, 330, 787, 941
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	2 cut(s)	394, 638
MluCI	AATT	4 cut(s)	62, 267, 489, 547
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	627, 691
Mph1103I	ATGCAT	1 cut(s)	255
MroI	TCCGGA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	120, 203, 575
MspI	CCGG	2 cut(s)	109, 644
MspR9I	CCNGG	2 cut(s)	455, 746
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	2 cut(s)	253, 676
MvaI	CCWGG	2 cut(s)	455, 746
MwoI	GCNNNNNNNGC	2 cut(s)	446, 455
NdeII	GATC	4 cut(s)	394, 638, 775, 915
NlaIII	CATG	3 cut(s)	71, 253, 472
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	959
NsiI	ATGCAT	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	2 cut(s)	253, 676
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	5 cut(s)	19, 140, 327, 388, 677
Pfl23II	CGTACG	1 cut(s)	429
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	453, 744
PspGI	CCWGG	2 cut(s)	453, 744
PspLI	CGTACG	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	498
PspXI	VCTCGAGB	1 cut(s)	151
PsuI	RGATCY	2 cut(s)	394, 638
RsaI	GTAC	4 cut(s)	225, 427, 431, 807
RsaNI	GTAC	4 cut(s)	224, 426, 430, 806
SaqAI	TTAA	3 cut(s)	120, 203, 575
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	394, 638, 775, 915
Sau96I	GGNCC	1 cut(s)	498
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	455, 746
SfaNI	GCATC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	151, 736
SmoI	CTYRAG	2 cut(s)	151, 736
SnaBI	TACGTA	1 cut(s)	429
Sse9I	AATT	4 cut(s)	62, 267, 489, 547
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	650, 721
SspMI	CTAG	3 cut(s)	294, 309, 788
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	453, 744
TaaI	ACNGT	2 cut(s)	183, 959
TaiI	ACGT	2 cut(s)	431, 795
TaqI	TCGA	4 cut(s)	152, 391, 483, 774
TasI	AATT	4 cut(s)	62, 267, 489, 547
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	5 cut(s)	19, 140, 327, 388, 677
Tru1I	TTAA	3 cut(s)	120, 203, 575
Tru9I	TTAA	3 cut(s)	120, 203, 575
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	959
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	959
TspDTI	ATGAA	8 cut(s)	56, 93, 135, 177, 227, 238, 501, 765
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	1 cut(s)	442
XagI	CCTNNNNNAGG	2 cut(s)	345, 402
XapI	RAATTY	2 cut(s)	62, 489
XhoI	CTCGAG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	294, 309, 788
ZraI	GACGTC	1 cut(s)	793
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.