Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Reverse (-)

57230633 .. 57231584

Gene Structure 952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCCTGAGCCTCGTAATCCACGGCTGAATCAACGGAATAGTTTCAAGAAGTCTAAGAGGGAACAACTGTTTTCTGCTGAAGAGCCCAAGATGGTGAGGAAGGTTCGGATAATCTGCTCCGATCCTGATGCTACTGACGACTCATCTTCCGAAGATGAAGGAATTGATAGAAAACTTCACAAACGCATGGTGAAGGAAATCACTCTTCCTTGTAATTTCACGCGCCCATCCAAGCTTGTTGTTGAGCCCGAGGGTTCTTCCAACAATGGAGTCAAAACCCCAACGCCTAAACCCAAGTTGGGGGTCTTGGCTAAAACCTCGAAAAAATCATCCAATTCGCCCTTTCGAGGAGTGAGGCAAAGAAAATGGGGCAAATGGGCGGCTGAAATTCGTGACCCTTTCAGCAAGACTAGGGTCTGGTTGGGAACCTACAACACTGCTGAGGATGCTTCCAAGGCCTACGAGGAAAGGAGGCTCTACTTCGAAAAGATGCTCTCTTTGGCCACAGCTTCAGAGGAGGAATCTGACTGCGTCTACTCCCAAAGGTCTCCGGCTTCAGTTCTGGATGTTGAGACATGTGCTTCCAATAACATTCGCAGTGGTGGTGATTTGGAGAATGGTGGTGATATGGAGACTGAAGATGTTGCGACTAATGCCCTCGGGGAGCTGCCAATTCCCAACGACTTGGGATTCATGGACGAGCAGCCATTTGGGCCGGAGCTCAACTTTGATGGGATTGAACCAGTAAGCTTTCAAGCGGAGATCGACTCGCTTCTTCTGGATGAAATCGGGCAGTTTTTCAACGATTTTGGTAGCATTGATGATGTCCATATTGGTGGTTTTGAAGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

284

Amino Acids

31.73

Weight (kDa)

5.01

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	115 - 163	8.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	223
AciI	CCGC	2 cut(s)	380, 758
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	4 cut(s)	99, 495, 540, 657
AfiI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
AflIII	ACRYGT	1 cut(s)	575
AgsI	TTSAA	5 cut(s)	46, 740, 755, 802, 845
AluBI	AGCT	5 cut(s)	235, 509, 667, 721, 750
AluI	AGCT	5 cut(s)	235, 509, 667, 721, 750
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	3 cut(s)	552, 566, 626
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	2 cut(s)	248, 659
AoxI	GGCC	3 cut(s)	456, 501, 713
ApeKI	GCWGC	2 cut(s)	667, 703
ApoI	RAATTY	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	4 cut(s)	106, 202, 617, 635
AsuII	TTCGAA	1 cut(s)	483
AvaI	CYCGRG	2 cut(s)	248, 659
BalI	TGGCCA	1 cut(s)	503
BanII	GRGCYC	3 cut(s)	87, 249, 723
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	654, 715
BccI	CCATC	3 cut(s)	85, 235, 725
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcoDI	GTCTC	3 cut(s)	552, 566, 626
BfaI	CTAG	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	712
BisI	GCNGC	3 cut(s)	381, 668, 704
BlsI	GCNGC	3 cut(s)	382, 669, 705
BmeT110I	CYCGRG	2 cut(s)	248, 659
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	1 cut(s)	427
BmsI	GCATC	3 cut(s)	118, 436, 480
BoxI	GACNNNNGTC	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
Bpu10I	CCTNAGC	2 cut(s)	6, 441
Bpu14I	TTCGAA	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	4 cut(s)	20, 249, 453, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 300, 347
Bse1I	ACTGG	1 cut(s)	743
BseDI	CCNNGG	4 cut(s)	20, 249, 453, 658
BseGI	GGATG	5 cut(s)	227, 329, 451, 571, 787
BseLI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	2 cut(s)	363, 530
BseXI	GCAGC	2 cut(s)	654, 715
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	458, 503, 715
BsiHKAI	GWGCWC	1 cut(s)	723
BsiHKCI	CYCGRG	2 cut(s)	248, 659
BsiSI	CCGG	2 cut(s)	551, 716
BslI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
BsmAI	GTCTC	3 cut(s)	552, 566, 626
BsnI	GGCC	3 cut(s)	458, 503, 715
Bso31I	GGTCTC	1 cut(s)	552
BsoBI	CYCGRG	2 cut(s)	248, 659
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	3 cut(s)	87, 249, 723
Bsp143I	GATC	2 cut(s)	121, 762
BspACI	CCGC	2 cut(s)	380, 758
BspANI	GGCC	3 cut(s)	458, 503, 715
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	743
BssECI	CCNNGG	4 cut(s)	20, 249, 453, 658
BssMI	GATC	2 cut(s)	121, 762
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	75, 210
BstBI	TTCGAA	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	6, 54, 441
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	5 cut(s)	227, 329, 451, 571, 787
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	124, 765
BstMAI	GTCTC	3 cut(s)	552, 566, 626
BstMBI	GATC	2 cut(s)	121, 762
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 455, 653, 712
BstNSI	RCATGY	1 cut(s)	579
BstPAI	GACNNNNGTC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	654, 715
BstXI	CCANNNNNNTGG	2 cut(s)	685, 836
BsuRI	GGCC	3 cut(s)	458, 503, 715
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	5 cut(s)	227, 329, 451, 571, 787
BtsI	GCAGTG	2 cut(s)	435, 604
BtsIMutI	CAGTG	2 cut(s)	435, 604
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	713
CseI	GACGC	1 cut(s)	520
CviAII	CATG	3 cut(s)	187, 576, 694
DdeI	CTNAG	3 cut(s)	6, 54, 441
DpnI	GATC	2 cut(s)	123, 764
DpnII	GATC	2 cut(s)	121, 762
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	2 cut(s)	75, 210
EarI	CTCTTC	2 cut(s)	75, 210
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	3 cut(s)	87, 249, 723
Eco31I	GGTCTC	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	4 cut(s)	99, 495, 540, 657
Eco88I	CYCGRG	2 cut(s)	248, 659
EcoICRI	GAGCTC	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	3 cut(s)	87, 249, 723
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	3 cut(s)	190, 579, 697
FaiI	YATR	5 cut(s)	188, 577, 629, 695, 831
FatI	CATG	3 cut(s)	186, 575, 693
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	381, 668, 704
FokI	GGATG	5 cut(s)	214, 316, 458, 578, 794
FriOI	GRGCYC	3 cut(s)	87, 249, 723
Fsp4HI	GCNGC	3 cut(s)	381, 668, 704
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	3 cut(s)	381, 668, 704
HaeIII	GGCC	3 cut(s)	458, 503, 715
HapII	CCGG	2 cut(s)	551, 716
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	190, 579, 697
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HindIII	AAGCTT	2 cut(s)	233, 748
HinfI	GANTC	6 cut(s)	28, 140, 270, 521, 690, 767
HpaII	CCGG	2 cut(s)	551, 716
HphI	GGTGA	4 cut(s)	106, 202, 617, 635
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	5 cut(s)	108, 121, 151, 514, 526
Hpy188III	TCNNGA	5 cut(s)	46, 125, 392, 563, 779
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	4 cut(s)	94, 152, 187, 839
HpyCH4III	ACNGT	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 455, 653, 712
HpyF3I	CTNAG	3 cut(s)	6, 54, 441
Hsp92II	CATG	3 cut(s)	190, 579, 697
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	121, 762
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	122, 664, 718
LpnPI	CCDG	8 cut(s)	18, 138, 403, 548, 564, 729, 756, 764
Lsp1109I	GCAGC	2 cut(s)	654, 715
LweI	GCATC	3 cut(s)	118, 436, 480
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	2 cut(s)	123, 764
MboI	GATC	2 cut(s)	121, 762
MboII	GAAGA	7 cut(s)	92, 138, 164, 197, 249, 650, 767
MhlI	GDGCHC	3 cut(s)	87, 249, 723
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	5 cut(s)	162, 214, 334, 387, 672
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	3 cut(s)	134, 279, 761
MmeI	TCCRAC	1 cut(s)	285
Mox20I	TGGCCA	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	834
Msp20I	TGGCCA	1 cut(s)	503
MspI	CCGG	2 cut(s)	551, 716
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	4 cut(s)	446, 455, 653, 712
NdeII	GATC	2 cut(s)	121, 762
NlaIII	CATG	3 cut(s)	190, 579, 697
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	579
NspV	TTCGAA	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	458
PciI	ACATGT	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	28, 521, 690
PflFI	GACNNNGTC	1 cut(s)	530
PkrI	GCNGC	3 cut(s)	382, 669, 705
PleI	GAGTC	3 cut(s)	134, 278, 761
PpsI	GAGTC	3 cut(s)	134, 278, 761
PscI	ACATGT	1 cut(s)	575
PshAI	GACNNNNGTC	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	713
PsyI	GACNNNGTC	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	834
SacI	GAGCTC	1 cut(s)	723
SapI	GCTCTTC	1 cut(s)	75
SatI	GCNGC	3 cut(s)	381, 668, 704
Sau3AI	GATC	2 cut(s)	121, 762
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	3 cut(s)	134, 279, 761
SduI	GDGCHC	3 cut(s)	87, 249, 723
SetI	ASST	9 cut(s)	105, 237, 320, 431, 511, 548, 669, 723, 752
SfaNI	GCATC	3 cut(s)	118, 436, 480
SfuI	TTCGAA	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	834
Sse9I	AATT	5 cut(s)	162, 214, 334, 387, 672
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	2 cut(s)	380, 758
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	723
StuI	AGGCCT	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	4 cut(s)	320, 346, 483, 765
TasI	AATT	5 cut(s)	162, 214, 334, 387, 672
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	28, 521, 690
TscAI	CASTG	2 cut(s)	442, 604
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	667, 703
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	171, 682, 798
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	2 cut(s)	442, 604
Tth111I	GACNNNGTC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.