Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Reverse (-)

8944609 .. 8946628

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGTCCTTTGTGAAACCTGAGAGAGACTCTTTGTTGAGAACAGTTCGTATTGTTTTCACTGATCCTGATGCTACTGATGATTCCTCTTCCTCTAGCGATGAATGGTTACCTAAACCTCGAAAGGTAAAGCGTTTTGTTCATGAGATTACTTTCCTCCCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCAATGCTGTCAAAACCCCTAGAAGGAAATCTACTAGGCAGTTTAAGTATCCTGTGGGAGTTAGGCCGAGGCCATCAGGCAAATTTGCTGCTGAGATTTTGAACCCATTCACTAAAACTAAGAAATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGGTTGAGTATGATGCACTGGCTTCTTCAGGTTCTGCTGTTTCCTCATCGGTTGTAACAGTGACTAGCCAGTGCTTGCGTTCCCCTACTTCTGCTTCTGTTTCTTGTGTAAGTGCTGATGATTTGTCTAAAGAAAAGACGTCTCTGAACAAAGATGTTGCTGCGTCTGGTGATTCAACCACCAAAGAAGTGTTCACTACTTTCGACTTTTCGGATGTGAAAATACCTGATCTGAGATTCTTAGCAGCAGAAGAGGATTCTATGGTTTCTAATGCAAATGGTGCAGAGCTAGACTTTGATTGTTTCCTTACTGACTCTAACATTCTGCTGGATGATTACTCATTGCTCGAAAATGATATCAACTTCAGCAGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGTGATTTCACTGAAATGGAATTCCAGCTTGATGATTTCAAATTTGCCTATACAGATCATCTGACAACACCGCCTCTCGGTTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

287

Amino Acids

31.99

Weight (kDa)

4.8

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	729
AciI	CCGC	1 cut(s)	845
AclWI	GGATC	2 cut(s)	59, 192
AcsI	RAATTY	3 cut(s)	272, 794, 815
AcuI	CTGAAG	2 cut(s)	381, 718
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	3 cut(s)	163, 213, 851
AgsI	TTSAA	4 cut(s)	292, 546, 746, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	4 cut(s)	347, 658, 766, 802
AluI	AGCT	4 cut(s)	347, 658, 766, 802
Alw26I	GTCTC	3 cut(s)	21, 172, 516
AlwI	GGATC	2 cut(s)	59, 192
AlwNI	CAGNNNCTG	2 cut(s)	347, 404
AoxI	GGCC	2 cut(s)	254, 260
ApeKI	GCWGC	3 cut(s)	278, 530, 614
ApoI	RAATTY	3 cut(s)	272, 794, 815
Asp700I	GAANNNNTTC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	551
AxyI	CCTNAGG	1 cut(s)	162
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	3 cut(s)	265, 517, 626
BccI	CCATC	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	3 cut(s)	21, 172, 516
BfaI	CTAG	5 cut(s)	96, 210, 225, 435, 659
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	729
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	3 cut(s)	279, 531, 615
BlsI	GCNGC	3 cut(s)	280, 532, 616
BmsI	GCATC	2 cut(s)	61, 373
BpiI	GAAGAC	1 cut(s)	746
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BsaHI	GRCGYC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 213, 851
Bse1I	ACTGG	2 cut(s)	393, 439
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	199, 710
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	589, 706
BseLI	CCNNNNNNNGG	3 cut(s)	163, 213, 851
BseMI	GCAATG	2 cut(s)	199, 710
BseMII	CTCAG	6 cut(s)	12, 176, 194, 273, 339, 593
BseNI	ACTGG	2 cut(s)	393, 439
BseXI	GCAGC	3 cut(s)	265, 517, 626
BsgI	GTGCAG	1 cut(s)	672
BshFI	GGCC	2 cut(s)	256, 262
BslI	CCNNNNNNNGG	3 cut(s)	163, 213, 851
BsmAI	GTCTC	3 cut(s)	21, 172, 516
BsmBI	CGTCTC	1 cut(s)	516
BsnI	GGCC	2 cut(s)	256, 262
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	64, 184, 598, 829
BspACI	CCGC	1 cut(s)	845
BspANI	GGCC	2 cut(s)	256, 262
BspCNI	CTCAG	6 cut(s)	13, 175, 193, 274, 340, 594
BspHI	TCATGA	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	729
BspPI	GGATC	2 cut(s)	59, 192
BspTNI	GGTCTC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	199, 710
BsrI	ACTGG	2 cut(s)	393, 439
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	4 cut(s)	64, 184, 598, 829
BssNI	GRCGYC	1 cut(s)	509
Bst4CI	ACNGT	4 cut(s)	46, 430, 752, 776
Bst6I	CTCTTC	2 cut(s)	94, 615
BstACI	GRCGYC	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	8 cut(s)	21, 162, 180, 282, 309, 348, 602, 610
BstEII	GGTNACC	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	589, 706
BstKTI	GATC	4 cut(s)	67, 187, 601, 832
BstMAI	GTCTC	3 cut(s)	21, 172, 516
BstMBI	GATC	4 cut(s)	64, 184, 598, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 650
BstPI	GGTNACC	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	265, 517, 626
BstV2I	GAAGAC	1 cut(s)	746
Bsu36I	CCTNAGG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	256, 262
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	589, 706
BtsIMutI	CAGTG	5 cut(s)	60, 386, 435, 446, 783
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	446
CaiI	CAGNNNCTG	2 cut(s)	347, 404
CciI	TCATGA	1 cut(s)	142
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	9 cut(s)	256, 262, 347, 356, 392, 438, 658, 766, 802
CviKI_1	RGCY	9 cut(s)	256, 262, 347, 356, 392, 438, 658, 766, 802
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	8 cut(s)	21, 162, 180, 282, 309, 348, 602, 610
DpnI	GATC	4 cut(s)	66, 186, 600, 831
DpnII	GATC	4 cut(s)	64, 184, 598, 829
Eam1104I	CTCTTC	2 cut(s)	94, 615
EarI	CTCTTC	2 cut(s)	94, 615
Eco31I	GGTCTC	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	727
Eco57I	CTGAAG	2 cut(s)	381, 718
Eco81I	CCTNAGG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	794
EcoRV	GATATC	1 cut(s)	727
Esp3I	CGTCTC	1 cut(s)	516
FaeI	CATG	1 cut(s)	146
FaiI	YATR	6 cut(s)	144, 330, 360, 381, 632, 825
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	279, 531, 615
FokI	GGATG	2 cut(s)	596, 713
Fsp4HI	GCNGC	3 cut(s)	279, 531, 615
FspBI	CTAG	5 cut(s)	96, 210, 225, 435, 659
GluI	GCNGC	3 cut(s)	279, 531, 615
HaeIII	GGCC	2 cut(s)	256, 262
HgaI	GACGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	6 cut(s)	29, 83, 542, 606, 626, 683
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	364, 564
Hpy188I	TCNGA	5 cut(s)	172, 516, 583, 603, 837
Hpy188III	TCNNGA	3 cut(s)	68, 143, 182
Hpy8I	GTNNAC	2 cut(s)	364, 564
HpyAV	CCTTC	3 cut(s)	207, 346, 364
HpyCH4III	ACNGT	4 cut(s)	46, 430, 752, 776
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	4 cut(s)	341, 386, 644, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 650
HpyF3I	CTNAG	8 cut(s)	21, 162, 180, 282, 309, 348, 602, 610
HpySE526I	ACGT	1 cut(s)	509
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	64, 184, 598, 829
Lsp1109I	GCAGC	3 cut(s)	265, 517, 626
LweI	GCATC	2 cut(s)	61, 373
MaeI	CTAG	5 cut(s)	96, 210, 225, 435, 659
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	3 cut(s)	108, 424, 430
MalI	GATC	4 cut(s)	66, 186, 600, 831
MboI	GATC	4 cut(s)	64, 184, 598, 829
MboII	GAAGA	4 cut(s)	81, 387, 632, 746
MluCI	AATT	3 cut(s)	272, 794, 815
MlyI	GAGTC	2 cut(s)	23, 677
MnlI	CCTC	9 cut(s)	97, 103, 129, 167, 171, 252, 424, 616, 858
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	2 cut(s)	234, 862
MslI	CAYNNNNRTG	1 cut(s)	788
MwoI	GCNNNNNNNGC	2 cut(s)	353, 650
NdeII	GATC	4 cut(s)	64, 184, 598, 829
NlaIII	CATG	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	83, 542, 606, 626
PkrI	GCNGC	3 cut(s)	280, 532, 616
PleI	GAGTC	2 cut(s)	23, 677
PpsI	GAGTC	2 cut(s)	23, 677
PspEI	GGTNACC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	2 cut(s)	347, 404
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	2 cut(s)	234, 862
SatI	GCNGC	3 cut(s)	279, 531, 615
Sau3AI	GATC	4 cut(s)	64, 184, 598, 829
SchI	GAGTC	2 cut(s)	23, 677
SfaNI	GCATC	2 cut(s)	61, 373
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	788
Sse9I	AATT	3 cut(s)	272, 794, 815
SsiI	CCGC	1 cut(s)	845
SspMI	CTAG	5 cut(s)	96, 210, 225, 435, 659
TaaI	ACNGT	4 cut(s)	46, 430, 752, 776
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	3 cut(s)	121, 573, 717
TasI	AATT	3 cut(s)	272, 794, 815
TfiI	GAWTC	4 cut(s)	83, 542, 606, 626
Tru1I	TTAA	2 cut(s)	234, 862
Tru9I	TTAA	2 cut(s)	234, 862
TscAI	CASTG	5 cut(s)	67, 393, 435, 446, 790
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	278, 530, 614
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	17, 117, 131, 345
TspRI	CASTG	5 cut(s)	67, 393, 435, 446, 790
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	3 cut(s)	272, 794, 815
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	5 cut(s)	96, 210, 225, 435, 659
ZraI	GACGTC	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.