Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Forward (+)

30162819 .. 30164226

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCCGGAGCCTCGGAAGCAACCGCTGAATCAGCGAAATGGTTTCAGAAAGTTTAAGGAAGACCGATTTCCTGCTGAAGACTACAAGAAGGTGAGGAAAGTTCGTGTTATCTGTTACGATCCTGATGCTACTGATGAATCATCTTCGAGCGAAGATGAAGGAAGGGGTAGAAGCTATGTCAAAAAACCAAAACGCATAATTCATGAAATCAATCTTCATCCCATTTTCACCCCTCCAGCTAAGGTCGTCGTCGAGCCCGAGAGTTCATGTCAAGACAGCAACAATGGAGTCAAAACCCCAAAACCCAAGGTGGGGTTTTTCGCCAGAACTTCAAGGAGACAGTCCTCTTCACCTTTCAGAGGTGTAAGGCAAAGGAAATGGGGAAAATGGGCCGCTGAGATTCGTGACCCTTTCAAAGGGCGTCGTACCTGGTTGGGTACTTTCAGCACCCCAGAGGATGCTTCCAAGGCCTATGAGGCCAAGAGGCTTGAGCTCGAAGAACTGTGGGCCAGGGAAACAGCTGCTCCGGCCACCAGCTCTGAGAAAAGCAACAACACCTCATCGTCTGCCGTTGTGTCTCATATGTCCTACGCCAACATCCAACAACCTGTTTCTTCCGAGGACTCTGACTCTGCCTTGTCTCGAAGGTCTCCTTCTTCGGTTCTTGATTTGGAGACTTCGGCTTCCAATAACATTGGAAATGTTGTTGATTTGGAGAAGGAGGTCGTCGATGATTCTCCTGATCTTGGAGAGCTGCAAATACCCGACTTGGGTTTTCTGGATGATCCTTTGGGCTCGCTTCCATTTGAGAATGAACTTAGCCTGGGACCGGAGCTTGACTCGCTTTGCTTGGAGGAGTTTGGTAAGTTCTTCAACGAGTTCAGTAGCATTGAGGATGTCCAGATTGGTGGGATTAATGGCTATGAGCCTACCAGTCTTCCTGACTTTTACTTCGAGGATCTTGGCAAGGATGATATCGCTTGTTGGTTGGATGAACCCCTCAACATAGCATGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

340

Amino Acids

38.02

Weight (kDa)

4.92

Isoelectric Point (pI)

67.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 393
AclWI	GGATC	3 cut(s)	113, 779, 966
AcoI	YGGCCR	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	427, 439
AfiI	CCNNNNNNNGG	7 cut(s)	311, 312, 359, 416, 746, 770, 829
AgsI	TTSAA	3 cut(s)	333, 415, 874
AjnI	CCWGG	3 cut(s)	428, 509, 822
AluBI	AGCT	7 cut(s)	174, 239, 493, 521, 537, 754, 835
AluI	AGCT	7 cut(s)	174, 239, 493, 521, 537, 754, 835
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	5 cut(s)	331, 582, 645, 654, 668
AlwI	GGATC	3 cut(s)	113, 779, 966
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	5 cut(s)	390, 468, 477, 507, 528
ApeKI	GCWGC	2 cut(s)	521, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	935, 967
AseI	ATTAAT	1 cut(s)	915
AspS9I	GGNCC	3 cut(s)	390, 507, 827
AsuHPI	GGTGA	3 cut(s)	103, 220, 342
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	827
BanII	GRGCYC	3 cut(s)	258, 495, 797
BbsI	GAAGAC	3 cut(s)	66, 84, 929
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	2 cut(s)	508, 741
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	3 cut(s)	430, 511, 824
BcoDI	GTCTC	5 cut(s)	331, 582, 645, 654, 668
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	393, 522, 755
BlsI	GCNGC	3 cut(s)	394, 523, 756
Bme1390I	CCNGG	3 cut(s)	430, 511, 824
Bme18I	GGWCC	1 cut(s)	827
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	390, 507, 827
BmiI	GGNNCC	2 cut(s)	9, 828
BmrFI	CCNGG	3 cut(s)	430, 511, 824
BmsI	GCATC	2 cut(s)	115, 448
BpiI	GAAGAC	3 cut(s)	66, 84, 929
BplI	GAGNNNNNCTC	2 cut(s)	824, 856
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	654
BsaJI	CCNNGG	6 cut(s)	11, 306, 465, 510, 618, 823
BsaWI	WCCGGW	1 cut(s)	829
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	7 cut(s)	311, 312, 359, 416, 746, 770, 829
Bse1I	ACTGG	1 cut(s)	933
BseBI	CCWGG	3 cut(s)	430, 511, 824
BseDI	CCNNGG	6 cut(s)	11, 306, 465, 510, 618, 823
BseGI	GGATG	7 cut(s)	217, 463, 597, 787, 901, 976, 997
BseLI	CCNNNNNNNGG	7 cut(s)	311, 312, 359, 416, 746, 770, 829
BseMII	CTCAG	2 cut(s)	387, 531
BseNI	ACTGG	1 cut(s)	933
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	2 cut(s)	508, 741
BshFI	GGCC	5 cut(s)	392, 470, 479, 509, 530
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	5, 527, 830
BslFI	GGGAC	1 cut(s)	840
BslI	CCNNNNNNNGG	7 cut(s)	311, 312, 359, 416, 746, 770, 829
BsmAI	GTCTC	5 cut(s)	331, 582, 645, 654, 668
BsmFI	GGGAC	1 cut(s)	840
BsnI	GGCC	5 cut(s)	392, 470, 479, 509, 530
Bso31I	GGTCTC	1 cut(s)	654
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	258, 495, 797
Bsp143I	GATC	4 cut(s)	118, 742, 784, 958
BspACI	CCGC	2 cut(s)	23, 393
BspANI	GGCC	5 cut(s)	392, 470, 479, 509, 530
BspCNI	CTCAG	2 cut(s)	388, 532
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	9, 828
BspPI	GGATC	3 cut(s)	113, 779, 966
BspTNI	GGTCTC	1 cut(s)	654
BsrI	ACTGG	1 cut(s)	933
BssECI	CCNNGG	6 cut(s)	11, 306, 465, 510, 618, 823
BssMI	GATC	4 cut(s)	118, 742, 784, 958
BssNI	GRCGYC	1 cut(s)	421
BssT1I	CCWWGG	2 cut(s)	306, 465
Bst2UI	CCWGG	3 cut(s)	430, 511, 824
Bst4CI	ACNGT	2 cut(s)	342, 504
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	797, 1012
BstDEI	CTNAG	4 cut(s)	240, 396, 540, 818
BstENI	CCTNNNNNAGG	2 cut(s)	357, 414
BstF5I	GGATG	7 cut(s)	217, 463, 597, 787, 901, 976, 997
BstKTI	GATC	4 cut(s)	121, 745, 787, 961
BstMAI	GTCTC	5 cut(s)	331, 582, 645, 654, 668
BstMBI	GATC	4 cut(s)	118, 742, 784, 958
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 31, 467, 476, 527, 841
BstNI	CCWGG	3 cut(s)	430, 511, 824
BstNSI	RCATGY	1 cut(s)	1014
BstSCI	CCNGG	3 cut(s)	428, 509, 822
BstV1I	GCAGC	2 cut(s)	508, 741
BstV2I	GAAGAC	3 cut(s)	66, 84, 929
BstX2I	RGATCY	1 cut(s)	958
BstXI	CCANNNNNNTGG	1 cut(s)	908
BstYI	RGATCY	1 cut(s)	958
BsuRI	GGCC	5 cut(s)	392, 470, 479, 509, 530
BtsCI	GGATG	7 cut(s)	217, 463, 597, 787, 901, 976, 997
Cac8I	GCNNGC	2 cut(s)	797, 1012
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	3 cut(s)	390, 507, 827
CseI	GACGC	1 cut(s)	410
CsiI	ACCWGGT	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	426, 438
CviAII	CATG	3 cut(s)	203, 267, 1011
CviQI	GTAC	2 cut(s)	426, 438
DdeI	CTNAG	4 cut(s)	240, 396, 540, 818
DpnI	GATC	4 cut(s)	120, 744, 786, 960
DpnII	GATC	4 cut(s)	118, 742, 784, 958
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	2 cut(s)	306, 465
Eco147I	AGGCCT	1 cut(s)	470
Eco24I	GRGCYC	3 cut(s)	258, 495, 797
Eco31I	GGTCTC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	827
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	493
EcoNI	CCTNNNNNAGG	2 cut(s)	357, 414
EcoRII	CCWGG	3 cut(s)	428, 509, 822
EcoRV	GATATC	1 cut(s)	976
EcoT14I	CCWWGG	2 cut(s)	306, 465
EcoT38I	GRGCYC	3 cut(s)	258, 495, 797
ErhI	CCWWGG	2 cut(s)	306, 465
FaeI	CATG	3 cut(s)	206, 270, 1014
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FaqI	GGGAC	1 cut(s)	840
FatI	CATG	3 cut(s)	202, 266, 1010
FauNDI	CATATG	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	393, 522, 755
FokI	GGATG	7 cut(s)	204, 470, 584, 794, 908, 983, 1004
FriOI	GRGCYC	3 cut(s)	258, 495, 797
Fsp4HI	GCNGC	3 cut(s)	393, 522, 755
GluI	GCNGC	3 cut(s)	393, 522, 755
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	5 cut(s)	392, 470, 479, 509, 530
HapII	CCGG	3 cut(s)	5, 527, 830
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	206, 270, 1014
HinfI	GANTC	8 cut(s)	28, 137, 288, 400, 623, 629, 734, 839
HpaII	CCGG	3 cut(s)	5, 527, 830
HphI	GGTGA	3 cut(s)	103, 220, 342
Hpy188I	TCNGA	6 cut(s)	15, 47, 359, 541, 619, 628
Hpy99I	CGWCG	4 cut(s)	251, 254, 426, 731
HpyAV	CCTTC	6 cut(s)	82, 152, 156, 639, 663, 712
HpyCH4III	ACNGT	2 cut(s)	342, 504
HpyCH4V	TGCA	1 cut(s)	757
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 31, 467, 476, 527, 841
HpyF3I	CTNAG	4 cut(s)	240, 396, 540, 818
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	206, 270, 1014
Kzo9I	GATC	4 cut(s)	118, 742, 784, 958
LmnI	GCTCC	3 cut(s)	7, 529, 832
Lsp1109I	GCAGC	2 cut(s)	508, 741
LweI	GCATC	2 cut(s)	115, 448
MabI	ACCWGGT	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	113, 404
MalI	GATC	4 cut(s)	120, 744, 786, 960
MboI	GATC	4 cut(s)	118, 742, 784, 958
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	3 cut(s)	258, 495, 797
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	4 cut(s)	297, 617, 623, 833
MmeI	TCCRAC	2 cut(s)	625, 969
MseI	TTAA	2 cut(s)	54, 915
MspA1I	CMGCKG	3 cut(s)	25, 395, 521
MspI	CCGG	3 cut(s)	5, 527, 830
MspR9I	CCNGG	3 cut(s)	430, 511, 824
MvaI	CCWGG	3 cut(s)	430, 511, 824
MwoI	GCNNNNNNNGC	6 cut(s)	16, 31, 467, 476, 527, 841
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	4 cut(s)	118, 742, 784, 958
NlaIII	CATG	3 cut(s)	206, 270, 1014
NlaIV	GGNNCC	2 cut(s)	9, 828
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	1014
PaeI	GCATGC	1 cut(s)	1014
PagI	TCATGA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	28, 137, 400, 734
PkrI	GCNGC	3 cut(s)	394, 523, 756
PleI	GAGTC	4 cut(s)	296, 617, 623, 833
PpsI	GAGTC	4 cut(s)	296, 617, 623, 833
PshBI	ATTAAT	1 cut(s)	915
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	428, 509, 822
PspGI	CCWGG	3 cut(s)	428, 509, 822
PspN4I	GGNNCC	2 cut(s)	9, 828
PspPI	GGNCC	3 cut(s)	390, 507, 827
PsuI	RGATCY	1 cut(s)	958
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	427, 439
RsaNI	GTAC	2 cut(s)	426, 438
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	54, 915
SatI	GCNGC	3 cut(s)	393, 522, 755
Sau3AI	GATC	4 cut(s)	118, 742, 784, 958
Sau96I	GGNCC	3 cut(s)	390, 507, 827
SchI	GAGTC	4 cut(s)	297, 617, 623, 833
ScrFI	CCNGG	3 cut(s)	430, 511, 824
SduI	GDGCHC	3 cut(s)	258, 495, 797
SexAI	ACCWGGT	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	115, 448
SfiI	GGCCNNNNNGGCC	1 cut(s)	476
SinI	GGWCC	1 cut(s)	827
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	1014
Sse9I	AATT	1 cut(s)	198
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	2 cut(s)	23, 393
SstI	GAGCTC	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	3 cut(s)	428, 509, 822
StyI	CCWWGG	2 cut(s)	306, 465
TaaI	ACNGT	2 cut(s)	342, 504
TaqI	TCGA	6 cut(s)	146, 252, 495, 643, 729, 954
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	198
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	4 cut(s)	28, 137, 400, 734
Tru1I	TTAA	2 cut(s)	54, 915
Tru9I	TTAA	2 cut(s)	54, 915
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	521, 754
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	8 cut(s)	150, 171, 191, 206, 219, 255, 828, 1008
VpaK11BI	GGWCC	1 cut(s)	827
VspI	ATTAAT	1 cut(s)	915
XagI	CCTNNNNNAGG	2 cut(s)	357, 414
XceI	RCATGY	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.