Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Forward (+)

268259 .. 269311

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000068.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgccggagcctcgtaatccacggctgaatcaacggagtagtttcaagaagtctaagagggaacaactctttcctgctgcagagcccaagatggtgagaagggttcgtataatctgctccgatcctgatgctactgatgactcatcttccgaagatgaaggagttgatagaaaacttcacaaacgcatggtgaaggaaatcactcttccttttaatttcacgcgcccatctaagcttgttgttgagcccgagggttcttccaacaatggagtcgaaaccccaacgcctaaacccaagttgggggttttggctaaaacctcgaaaaaatcatccaattcgccctttcgaggtgtgaggcaaagaaaatggggcaaatgggcggctgaaattcgtgaccctttcagcaagactagggtctggttgggaacctacaacactgctgaggatgcttccaaggcctacgaggaaaggaggctctacttcgaaaagatgctctctttggccacagcttcagaggtcagctctgagaaaagcagcacccccaccacctcttgttctgccgtcgtctctcggtcggtcaacaacacccaacaacctgctgtttcatccgaggaggaatctgactgcgtctactcccaaaggtctccggcctcagttctggatgttgagacctgtgcttccaacaacattcgcagtggtggtgatttggagaatggtggtgatatggagactgaagatgttgaagatgttgggactaatgccctcggggagctgccaattcccaatgacttgggattcatggacgagcagccatttgggccggagctcaactttgatgggattgaaccagtaagctttcaagcggagattgactcgcttcttctggatgaaattgggcagtttttcaacgattttggtagcattgatgatgtccatattggtggctttgaaggaaatgagcccagcaatcttcctgattgtgactttggggatcttggcaaggaggactttgcttgctggatgactgaaacctccaacatacaatgccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

350

Amino Acids

38.75

Weight (kDa)

4.66

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	1 cut(s)	223
AciI	CCGC	2 cut(s)	380, 863
AclWI	GGATC	2 cut(s)	116, 999
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	2 cut(s)	495, 753
AfiI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
AgsI	TTSAA	6 cut(s)	46, 743, 845, 860, 907, 950
AluBI	AGCT	6 cut(s)	235, 509, 522, 772, 826, 855
AluI	AGCT	6 cut(s)	235, 509, 522, 772, 826, 855
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	4 cut(s)	571, 648, 662, 722
AlwI	GGATC	2 cut(s)	116, 999
Ama87I	CYCGRG	2 cut(s)	248, 764
AoxI	GGCC	4 cut(s)	456, 501, 648, 818
ApeKI	GCWGC	4 cut(s)	77, 534, 772, 808
ApoI	RAATTY	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	818
AsuHPI	GGTGA	4 cut(s)	106, 202, 713, 731
AsuII	TTCGAA	1 cut(s)	483
AvaI	CYCGRG	2 cut(s)	248, 764
BalI	TGGCCA	1 cut(s)	503
BanII	GRGCYC	4 cut(s)	87, 249, 828, 963
Bbv12I	GWGCWC	1 cut(s)	828
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	4 cut(s)	64, 546, 759, 820
BccI	CCATC	3 cut(s)	85, 235, 830
BceAI	ACGGC	2 cut(s)	38, 545
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcoDI	GTCTC	4 cut(s)	571, 648, 662, 722
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	604
BglI	GCCNNNNNGGC	1 cut(s)	817
BisI	GCNGC	5 cut(s)	78, 381, 535, 773, 809
BlsI	GCNGC	5 cut(s)	79, 382, 536, 774, 810
BmeT110I	CYCGRG	2 cut(s)	248, 764
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	2 cut(s)	9, 427
BmsI	GCATC	3 cut(s)	118, 436, 480
BoxI	GACNNNNGTC	1 cut(s)	413
BplI	GAGNNNNNCTC	4 cut(s)	506, 538, 857, 889
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	483
BsaI	GGTCTC	2 cut(s)	648, 662
BsaJI	CCNNGG	5 cut(s)	20, 249, 453, 609, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 300, 347
Bse1I	ACTGG	1 cut(s)	848
BseDI	CCNNGG	5 cut(s)	20, 249, 453, 609, 763
BseGI	GGATG	6 cut(s)	329, 451, 605, 667, 892, 1026
BseLI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
BseMII	CTCAG	3 cut(s)	432, 516, 666
BseNI	ACTGG	1 cut(s)	848
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	4 cut(s)	64, 546, 759, 820
BseYI	CCCAGC	1 cut(s)	962
Bsh1236I	CGCG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	4 cut(s)	458, 503, 650, 820
BsiEI	CGRYCG	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	2 cut(s)	248, 764
BsiSI	CCGG	3 cut(s)	5, 647, 821
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
BsmAI	GTCTC	4 cut(s)	571, 648, 662, 722
BsmBI	CGTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	766
BsnI	GGCC	4 cut(s)	458, 503, 650, 820
Bso31I	GGTCTC	2 cut(s)	648, 662
BsoBI	CYCGRG	2 cut(s)	248, 764
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	4 cut(s)	87, 249, 828, 963
Bsp143I	GATC	2 cut(s)	121, 991
BspACI	CCGC	2 cut(s)	380, 863
BspANI	GGCC	4 cut(s)	458, 503, 650, 820
BspCNI	CTCAG	3 cut(s)	433, 517, 665
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	9, 427
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	116, 999
BspT104I	TTCGAA	1 cut(s)	483
BspTNI	GGTCTC	2 cut(s)	648, 662
BsrI	ACTGG	1 cut(s)	848
BssECI	CCNNGG	5 cut(s)	20, 249, 453, 609, 763
BssMI	GATC	2 cut(s)	121, 991
BssT1I	CCWWGG	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	1015
BstDEI	CTNAG	5 cut(s)	54, 231, 441, 525, 652
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	6 cut(s)	329, 451, 605, 667, 892, 1026
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	124, 994
BstMAI	GTCTC	4 cut(s)	571, 648, 662, 722
BstMBI	GATC	2 cut(s)	121, 991
BstMCI	CGRYCG	1 cut(s)	575
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 455, 817
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	4 cut(s)	64, 546, 759, 820
BstX2I	RGATCY	1 cut(s)	991
BstXI	CCANNNNNNTGG	2 cut(s)	790, 941
BstYI	RGATCY	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	458, 503, 650, 820
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	6 cut(s)	329, 451, 605, 667, 892, 1026
BtsI	GCAGTG	2 cut(s)	435, 700
BtsIMutI	CAGTG	2 cut(s)	435, 700
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	1015
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	818
CseI	GACGC	1 cut(s)	616
CviAII	CATG	2 cut(s)	187, 799
DdeI	CTNAG	5 cut(s)	54, 231, 441, 525, 652
DpnI	GATC	2 cut(s)	123, 993
DpnII	GATC	2 cut(s)	121, 991
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	4 cut(s)	87, 249, 828, 963
Eco31I	GGTCTC	2 cut(s)	648, 662
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	2 cut(s)	495, 753
Eco88I	CYCGRG	2 cut(s)	248, 764
EcoICRI	GAGCTC	1 cut(s)	826
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	4 cut(s)	87, 249, 828, 963
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	2 cut(s)	190, 802
FaiI	YATR	6 cut(s)	110, 188, 725, 800, 936, 1040
FalI	AAGNNNNNCTT	2 cut(s)	992, 1024
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	2 cut(s)	186, 798
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	5 cut(s)	78, 381, 535, 773, 809
FokI	GGATG	6 cut(s)	316, 458, 592, 674, 899, 1033
FriOI	GRGCYC	4 cut(s)	87, 249, 828, 963
Fsp4HI	GCNGC	5 cut(s)	78, 381, 535, 773, 809
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	5 cut(s)	78, 381, 535, 773, 809
GsaI	CCCAGC	1 cut(s)	966
HaeIII	GGCC	4 cut(s)	458, 503, 650, 820
HapII	CCGG	3 cut(s)	5, 647, 821
HgaI	GACGC	1 cut(s)	616
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	190, 802
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	2 cut(s)	233, 853
HinfI	GANTC	6 cut(s)	28, 140, 270, 617, 795, 872
HpaII	CCGG	3 cut(s)	5, 647, 821
HphI	GGTGA	4 cut(s)	106, 202, 713, 731
Hpy166II	GTNNAC	2 cut(s)	580, 631
Hpy188I	TCNGA	6 cut(s)	121, 151, 514, 526, 610, 622
Hpy188III	TCNNGA	6 cut(s)	46, 125, 392, 659, 884, 974
Hpy8I	GTNNAC	2 cut(s)	580, 631
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	4 cut(s)	93, 152, 187, 944
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 455, 817
HpyF3I	CTNAG	5 cut(s)	54, 231, 441, 525, 652
Hsp92II	CATG	2 cut(s)	190, 802
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	121, 991
LmnI	GCTCC	4 cut(s)	7, 122, 769, 823
Lsp1109I	GCAGC	4 cut(s)	64, 546, 759, 820
LweI	GCATC	3 cut(s)	118, 436, 480
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	392, 980
MalI	GATC	2 cut(s)	123, 993
MboI	GATC	2 cut(s)	121, 991
MboII	GAAGA	8 cut(s)	138, 164, 197, 249, 746, 755, 872, 962
MflI	RGATCY	1 cut(s)	991
MhlI	GDGCHC	4 cut(s)	87, 249, 828, 963
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	5 cut(s)	214, 334, 387, 777, 891
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	3 cut(s)	134, 279, 866
MmeI	TCCRAC	2 cut(s)	285, 705
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	939
Msp20I	TGGCCA	1 cut(s)	503
MspI	CCGG	3 cut(s)	5, 647, 821
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	3 cut(s)	446, 455, 817
NdeII	GATC	2 cut(s)	121, 991
NlaIII	CATG	2 cut(s)	190, 802
NlaIV	GGNNCC	2 cut(s)	9, 427
NmuCI	GTSAC	2 cut(s)	392, 980
NspV	TTCGAA	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	28, 617, 795
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	5 cut(s)	79, 382, 536, 774, 810
PleI	GAGTC	3 cut(s)	134, 278, 866
PpsI	GAGTC	3 cut(s)	134, 278, 866
PshAI	GACNNNNGTC	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	828
PspFI	CCCAGC	1 cut(s)	962
PspN4I	GGNNCC	2 cut(s)	9, 427
PspPI	GGNCC	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	991
PsyI	GACNNNGTC	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	939
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	5 cut(s)	78, 381, 535, 773, 809
Sau3AI	GATC	2 cut(s)	121, 991
Sau96I	GGNCC	1 cut(s)	818
SchI	GAGTC	3 cut(s)	134, 279, 866
SduI	GDGCHC	4 cut(s)	87, 249, 828, 963
SfaNI	GCATC	3 cut(s)	118, 436, 480
SfcI	CTRYAG	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	939
Sse9I	AATT	5 cut(s)	214, 334, 387, 777, 891
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	2 cut(s)	380, 863
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	453
TaqI	TCGA	4 cut(s)	273, 320, 346, 483
TaqII	GACCGA	2 cut(s)	561, 565
TasI	AATT	5 cut(s)	214, 334, 387, 777, 891
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	28, 617, 795
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	442, 700
TseFI	GTSAC	2 cut(s)	392, 980
TseI	GCWGC	4 cut(s)	77, 534, 772, 808
Tsp45I	GTSAC	2 cut(s)	392, 980
TspDTI	ATGAA	4 cut(s)	171, 594, 787, 903
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	2 cut(s)	442, 700
Tth111I	GACNNNGTC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.