Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Reverse (-)

28468622 .. 28469662

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27491.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCCTGAGCCTCGTAATCCACGGCTGAATCAAGGGAATAGTTTCAAGAAGTCTAAGAGGGAACAACTGTATCCTTCTGAAGAGCCCAAGATGGTGAGGAAGGTTCGGATAATCTGCTCCGATCCTGACGCTACTGACGACTCATCTTCCGAAGATGAAGGAATTGATCGAAAGTTTCACAAACGCATGGTGAAGGAAGTCACTCTTCCTTTCCATTTTACTCGGCCATCTAAGCTTGTTGTCGAGCCTCAGAGTTCTTGCAACAATGGAGTCAAAACCCCAACGCCTAAACCCAAGTTGGGGGTTTTGTCTAAAACATCGAAAAGAGTAACCAATTCACCTTTCAGGGGTGTGAGGCAAAGAAAATGGGGCAAATGGGCAGCCGAAATTCGTGACCCTTTCACTAAGAGTCGGCTCTGGTTGGGAACCTACAACACTGCTGAGGATGCTTCAAAGGCCTATGAAGAAATGAAGCTCTACTTCGAAAAGAAGCTCTCTTTGGCCACAGCTTCGGATGTCAGCTCTGAGAAAAGCAACAACACCACCACCTCTTGTTCTGCTGTTGTTTCTCGGTCAGTCAACACTCAGCAACCTGCTGTTTCATCTGAGGAGGAATCTGACTGTGTCTACTCCCAAAGGTCTCCTGCTTCAGTTCTGGATGTCGAGACCTGTGCTTCCAACAACATTCACAGTGGTGGTGAATCGGAGAACGGTGGTTATATGGAGAATGAAGATGTTGGGACTAATGCCCTTGGGCAACTACCAATTCCCAACGACTTGGGATTCATGGACGAGCAGCCATTTGGGCAGGAGCTCAACTTTGATGGGATTGATCCAATCAGCTTTCAAGCGGAGATCGACTCTCTCCTTCTGGATGAAATTGGGCAGTTCTTCAACGTTTTCGGTAGCATTGATGATGTCCATATTGGTGGTTTTGAAGGAAATGAGCCCAGCAATCTTCCTGACTGTGACTTTGGTGATCTTGGCAAGGAGGACTTTGCTTGCTGGATGACTGAAACCTCCAACATACAATGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

347

Amino Acids

38.48

Weight (kDa)

4.88

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	115 - 162	7.3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	601
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	1 cut(s)	851
AclI	AACGTT	1 cut(s)	897
AclWI	GGATC	2 cut(s)	116, 827
AcoI	YGGCCR	2 cut(s)	224, 501
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	2 cut(s)	99, 633
AfiI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
AgsI	TTSAA	5 cut(s)	46, 453, 848, 895, 938
AjuI	GAANNNNNNNTTGG	4 cut(s)	326, 358, 482, 514
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	7 cut(s)	235, 475, 493, 509, 522, 814, 843
AluI	AGCT	7 cut(s)	235, 475, 493, 509, 522, 814, 843
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	2 cut(s)	645, 659
AlwI	GGATC	2 cut(s)	116, 827
AoxI	GGCC	3 cut(s)	224, 456, 501
ApeKI	GCWGC	2 cut(s)	380, 796
ApoI	RAATTY	1 cut(s)	387
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
Asp700I	GAANNNNTTC	1 cut(s)	41
AsuHPI	GGTGA	5 cut(s)	106, 202, 330, 710, 989
AsuII	TTCGAA	1 cut(s)	483
BaeI	ACNNNNGTAYC	2 cut(s)	53, 86
BalI	TGGCCA	1 cut(s)	503
BanII	GRGCYC	3 cut(s)	87, 816, 951
Bbv12I	GWGCWC	1 cut(s)	816
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	392, 808
BccI	CCATC	3 cut(s)	85, 235, 818
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BciVI	GTATCC	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	645, 659
BfuAI	ACCTGC	1 cut(s)	601
BfuI	GTATCC	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	805
BisI	GCNGC	2 cut(s)	381, 797
BlsI	GCNGC	2 cut(s)	382, 798
BmiI	GGNNCC	1 cut(s)	427
BmsI	GCATC	1 cut(s)	436
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
Bpu10I	CCTNAGC	2 cut(s)	6, 441
Bpu14I	TTCGAA	1 cut(s)	483
BsaI	GGTCTC	2 cut(s)	645, 659
BsaJI	CCNNGG	2 cut(s)	20, 751
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 300, 347
BseDI	CCNNGG	2 cut(s)	20, 751
BseGI	GGATG	5 cut(s)	451, 520, 664, 880, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
BseMII	CTCAG	5 cut(s)	263, 432, 516, 597, 599
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	392, 808
BseYI	CCCAGC	1 cut(s)	950
BshFI	GGCC	3 cut(s)	226, 458, 503
BsiHKAI	GWGCWC	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	3 cut(s)	299, 300, 347
BsmAI	GTCTC	2 cut(s)	645, 659
BsmFI	GGGAC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	226, 458, 503
Bso31I	GGTCTC	2 cut(s)	645, 659
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	3 cut(s)	87, 816, 951
Bsp143I	GATC	5 cut(s)	121, 166, 832, 855, 979
BspACI	CCGC	1 cut(s)	851
BspANI	GGCC	3 cut(s)	226, 458, 503
BspCNI	CTCAG	5 cut(s)	262, 433, 517, 598, 598
BspLI	GGNNCC	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	601
BspPI	GGATC	2 cut(s)	116, 827
BspQI	GCTCTTC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	483
BspTNI	GGTCTC	2 cut(s)	645, 659
BssECI	CCNNGG	2 cut(s)	20, 751
BssMI	GATC	5 cut(s)	121, 166, 832, 855, 979
BssT1I	CCWWGG	1 cut(s)	751
Bst4CI	ACNGT	5 cut(s)	69, 623, 692, 713, 968
Bst6I	CTCTTC	2 cut(s)	75, 210
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	1003
BstDEI	CTNAG	9 cut(s)	6, 54, 231, 249, 405, 441, 525, 585, 606
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	5 cut(s)	451, 520, 664, 880, 1014
BstKTI	GATC	5 cut(s)	124, 169, 835, 858, 982
BstMAI	GTCTC	2 cut(s)	645, 659
BstMBI	GATC	5 cut(s)	121, 166, 832, 855, 979
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 446, 455, 805
BstV1I	GCAGC	2 cut(s)	392, 808
BstXI	CCANNNNNNTGG	2 cut(s)	778, 929
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	226, 458, 503
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	5 cut(s)	451, 520, 664, 880, 1014
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	435, 697
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	1003
CseI	GACGC	1 cut(s)	137
CviAII	CATG	2 cut(s)	187, 787
DdeI	CTNAG	9 cut(s)	6, 54, 231, 249, 405, 441, 525, 585, 606
DpnI	GATC	5 cut(s)	123, 168, 834, 857, 981
DpnII	GATC	5 cut(s)	121, 166, 832, 855, 979
EaeI	YGGCCR	2 cut(s)	224, 501
Eam1104I	CTCTTC	2 cut(s)	75, 210
EarI	CTCTTC	2 cut(s)	75, 210
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	751
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	3 cut(s)	87, 816, 951
Eco31I	GGTCTC	2 cut(s)	645, 659
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	99, 633
EcoICRI	GAGCTC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	751
EcoT38I	GRGCYC	3 cut(s)	87, 816, 951
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	2 cut(s)	190, 790
FaiI	YATR	7 cut(s)	188, 462, 720, 722, 788, 924, 1028
FalI	AAGNNNNNCTT	6 cut(s)	189, 221, 464, 496, 980, 1012
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	2 cut(s)	186, 786
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	381, 797
FokI	GGATG	5 cut(s)	458, 527, 671, 887, 1021
FriOI	GRGCYC	3 cut(s)	87, 816, 951
Fsp4HI	GCNGC	2 cut(s)	381, 797
GluI	GCNGC	2 cut(s)	381, 797
GsaI	CCCAGC	1 cut(s)	954
HaeIII	GGCC	3 cut(s)	226, 458, 503
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	190, 790
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	8 cut(s)	28, 140, 270, 409, 614, 701, 783, 860
HphI	GGTGA	5 cut(s)	106, 202, 330, 710, 989
Hpy166II	GTNNAC	2 cut(s)	580, 628
Hpy188III	TCNNGA	7 cut(s)	46, 125, 392, 656, 664, 872, 962
Hpy8I	GTNNAC	2 cut(s)	580, 628
HpyAV	CCTTC	6 cut(s)	84, 94, 152, 187, 878, 932
HpyCH4III	ACNGT	5 cut(s)	69, 623, 692, 713, 968
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 446, 455, 805
HpyF3I	CTNAG	9 cut(s)	6, 54, 231, 249, 405, 441, 525, 585, 606
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	2 cut(s)	190, 790
Kzo9I	GATC	5 cut(s)	121, 166, 832, 855, 979
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	122, 811
Lsp1109I	GCAGC	2 cut(s)	392, 808
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	4 cut(s)	199, 328, 392, 968
MalI	GATC	5 cut(s)	123, 168, 834, 857, 981
MboI	GATC	5 cut(s)	121, 166, 832, 855, 979
MboII	GAAGA	8 cut(s)	92, 138, 164, 197, 476, 743, 883, 950
MhlI	GDGCHC	3 cut(s)	87, 816, 951
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	5 cut(s)	162, 334, 387, 765, 879
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	4 cut(s)	134, 279, 418, 854
MmeI	TCCRAC	1 cut(s)	702
Mox20I	TGGCCA	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	503
MslI	CAYNNNNRTG	2 cut(s)	693, 927
Msp20I	TGGCCA	1 cut(s)	503
MwoI	GCNNNNNNNGC	4 cut(s)	232, 446, 455, 805
NdeII	GATC	5 cut(s)	121, 166, 832, 855, 979
NlaIII	CATG	2 cut(s)	190, 790
NlaIV	GGNNCC	1 cut(s)	427
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	199, 392, 968
NspV	TTCGAA	1 cut(s)	483
OliI	CACNNNNGTG	1 cut(s)	693
PceI	AGGCCT	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	28, 614, 701, 783
PflFI	GACNNNGTC	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	382, 798
PleI	GAGTC	4 cut(s)	134, 278, 417, 854
PpsI	GAGTC	4 cut(s)	134, 278, 417, 854
Psp124BI	GAGCTC	1 cut(s)	816
Psp1406I	AACGTT	1 cut(s)	897
PspFI	CCCAGC	1 cut(s)	950
PspN4I	GGNNCC	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	623
RseI	CAYNNNNRTG	2 cut(s)	693, 927
SacI	GAGCTC	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	75
SatI	GCNGC	2 cut(s)	381, 797
Sau3AI	GATC	5 cut(s)	121, 166, 832, 855, 979
SchI	GAGTC	4 cut(s)	134, 279, 418, 854
SduI	GDGCHC	3 cut(s)	87, 816, 951
SfaNI	GCATC	1 cut(s)	436
SfuI	TTCGAA	1 cut(s)	483
SmiMI	CAYNNNNRTG	2 cut(s)	693, 927
Sse9I	AATT	5 cut(s)	162, 334, 387, 765, 879
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	1 cut(s)	851
SstI	GAGCTC	1 cut(s)	816
StuI	AGGCCT	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	5 cut(s)	69, 623, 692, 713, 968
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	6 cut(s)	169, 243, 320, 483, 663, 858
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	5 cut(s)	162, 334, 387, 765, 879
TfiI	GAWTC	4 cut(s)	28, 614, 701, 783
TscAI	CASTG	2 cut(s)	442, 697
TseFI	GTSAC	3 cut(s)	199, 392, 968
TseI	GCWGC	2 cut(s)	380, 796
Tsp45I	GTSAC	3 cut(s)	199, 392, 968
TspDTI	ATGAA	7 cut(s)	171, 477, 485, 591, 744, 775, 891
TspRI	CASTG	2 cut(s)	442, 697
Tth111I	GACNNNGTC	1 cut(s)	623
XapI	RAATTY	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.