Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Forward (+)

9475350 .. 9477590

Gene Structure 2241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTGAACGAAAGAAACGCTCTTCTATTCAAACCAATAAACCCAACAAAAAACCCATGAAGAAGAAACCTTTTCAGCTAAATCACCTCCCAGGTTTATCTGAAGATTTGAAGACTATGAGAAAACTCCGTTTCGTTGTGAATGATCCTTACGCTACTGACTACTCATCAAGCGAAGAAGAAGAAAGGAGTCAGAGAAGGAAACGTTATGTCTGTGAGATCGATCTTCCTTTCGCTCAAGCTGCTACTCAAGCAGAATCTGAAAGCTCATATTGTCAGGAGAGTAACAATAATGGTGTAAGCAAGACTAAAATCTCAGCTTGTAGCAAAAAGGTTTTACGCAGCAAAGCATCTCCGGTCGTTGGACGTTCTTCTACTACTGTCTCGAAGCCTGTTGGTGTTAGGCAGAGGAAATGGGGTAAATGGGCTGCTGAGATTAGACATCCAATCACCAAAGTAAGAACTTGGTTGGGTACTTACGAGACGCTTGAACAAGCAGCTGATGCTTATGCTACCAAGAAGCTTGAGTTTGATGCTCTGGCTGCAGCCACTTCTGCTGCTTCCTCTGTTTTGTCAAATGAGTCTGGTTCTATGATCTCAGCCTCAGGGTCAAGCATTGATCTTGACAAGAAGCTAGTTGATTCGACTCTTGATCAACAAGCTGGTGAATCGAAGAAAGCGAGTTTTGATTTCGACTTTGCAGATCTACAGATTCCTGAAATGGGTTGCTTCATTGATGACTCATTCATCCCAAATGCTTGTGAGCTTGATTTTCTCTTAACAGAAGAGAACAACAACCAAATGTTGGATGATTACTGTGGCATAGATGATCTGGACATCATTGGTCTTGAATGTGACGGTCCAAGCGAACTTCCAGACTATGATTTCTCAGATGTGGAGATCGATCTTGGTCTCATTGGAACCACCATTGACAAGTATGCTTTCGTTGATCATATCGCAACAACTACTCCCACTCCTCTTAATATCGCGTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

332

Amino Acids

36.73

Weight (kDa)

5.04

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	129 - 170	1.2e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	805
AccII	CGCG	1 cut(s)	989
AclI	AACGTT	1 cut(s)	205
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	362, 722, 805
AgsI	TTSAA	4 cut(s)	32, 112, 491, 851
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	9 cut(s)	79, 242, 267, 320, 500, 523, 634, 662, 766
AluI	AGCT	9 cut(s)	79, 242, 267, 320, 500, 523, 634, 662, 766
Alw26I	GTCTC	3 cut(s)	388, 476, 917
AlwI	GGATC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	260
ApeKI	GCWGC	7 cut(s)	242, 342, 428, 497, 542, 545, 557
AspS9I	GGNCC	1 cut(s)	860
AsuHPI	GGTGA	3 cut(s)	77, 442, 677
AvaII	GGWCC	1 cut(s)	860
AxyI	CCTNAGG	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	7 cut(s)	229, 354, 415, 509, 529, 544, 557
BciT130I	CCWGG	1 cut(s)	93
BclI	TGATCA	2 cut(s)	652, 949
BcoDI	GTCTC	3 cut(s)	388, 476, 917
BfaI	CTAG	1 cut(s)	635
BfmI	CTRYAG	2 cut(s)	543, 707
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	7 cut(s)	243, 343, 429, 498, 543, 546, 558
BlsI	GCNGC	7 cut(s)	244, 344, 430, 499, 544, 547, 559
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	1 cut(s)	860
BmiI	GGNNCC	1 cut(s)	922
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	359, 493, 523
BpiI	GAAGAC	1 cut(s)	119
BpuEI	CTTGAG	3 cut(s)	222, 234, 545
Bsa29I	ATCGAT	2 cut(s)	222, 903
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	4 cut(s)	952, 958, 982, 988
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 722, 805
Bse21I	CCTNAGG	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	93
BseCI	ATCGAT	2 cut(s)	222, 903
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	3 cut(s)	442, 747, 814
BseLI	CCNNNNNNNGG	3 cut(s)	362, 722, 805
BseMII	CTCAG	5 cut(s)	330, 423, 612, 618, 903
BseRI	GAGGAG	1 cut(s)	966
BseSI	GKGCMC	1 cut(s)	995
BseXI	GCAGC	7 cut(s)	229, 354, 415, 509, 529, 544, 557
Bsh1236I	CGCG	1 cut(s)	989
Bsh1285I	CGRYCG	1 cut(s)	360
BshVI	ATCGAT	2 cut(s)	222, 903
BsiEI	CGRYCG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	3 cut(s)	362, 722, 805
BsmAI	GTCTC	3 cut(s)	388, 476, 917
BsmBI	CGTCTC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	917
Bsp1286I	GDGCHC	1 cut(s)	995
BspCNI	CTCAG	5 cut(s)	329, 424, 611, 617, 902
BspDI	ATCGAT	2 cut(s)	222, 903
BspFNI	CGCG	1 cut(s)	989
BspLI	GGNNCC	1 cut(s)	922
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	917
BssECI	CCNNGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	382, 818, 860
Bst6I	CTCTTC	2 cut(s)	28, 780
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	5 cut(s)	316, 432, 598, 604, 889
BstF5I	GGATG	3 cut(s)	442, 747, 814
BstFNI	CGCG	1 cut(s)	989
BstMAI	GTCTC	3 cut(s)	388, 476, 917
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 251, 503, 542, 554
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	2 cut(s)	543, 707
BstSLI	GKGCMC	1 cut(s)	995
BstUI	CGCG	1 cut(s)	989
BstV1I	GCAGC	7 cut(s)	229, 354, 415, 509, 529, 544, 557
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
Bsu15I	ATCGAT	2 cut(s)	222, 903
Bsu36I	CCTNAGG	1 cut(s)	604
BsuTUI	ATCGAT	2 cut(s)	222, 903
BtsCI	GGATG	3 cut(s)	442, 747, 814
Cac8I	GCNNGC	1 cut(s)	991
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	860
ClaI	ATCGAT	2 cut(s)	222, 903
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	58
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	5 cut(s)	316, 432, 598, 604, 889
Eam1104I	CTCTTC	2 cut(s)	28, 780
EarI	CTCTTC	2 cut(s)	28, 780
Eco31I	GGTCTC	1 cut(s)	917
Eco47I	GGWCC	1 cut(s)	860
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	1 cut(s)	61
FatI	CATG	1 cut(s)	57
FbaI	TGATCA	2 cut(s)	652, 949
Fnu4HI	GCNGC	7 cut(s)	243, 343, 429, 498, 543, 546, 558
FokI	GGATG	3 cut(s)	429, 734, 821
Fsp4HI	GCNGC	7 cut(s)	243, 343, 429, 498, 543, 546, 558
FspBI	CTAG	1 cut(s)	635
GluI	GCNGC	7 cut(s)	243, 343, 429, 498, 543, 546, 558
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	493
Hin1II	CATG	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	8 cut(s)	190, 257, 581, 641, 646, 668, 712, 740
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	3 cut(s)	77, 442, 677
Hpy188I	TCNGA	4 cut(s)	103, 195, 262, 892
Hpy188III	TCNNGA	8 cut(s)	278, 385, 623, 650, 716, 833, 848, 875
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	3 cut(s)	382, 818, 860
HpyCH4IV	ACGT	2 cut(s)	205, 367
HpyCH4V	TGCA	2 cut(s)	545, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 251, 503, 542, 554
HpyF3I	CTNAG	5 cut(s)	316, 432, 598, 604, 889
HpySE526I	ACGT	2 cut(s)	205, 367
Hsp92II	CATG	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	652, 949
LguI	GCTCTTC	1 cut(s)	28
Lsp1109I	GCAGC	7 cut(s)	229, 354, 415, 509, 529, 544, 557
LweI	GCATC	3 cut(s)	359, 493, 523
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	2 cut(s)	205, 367
MaeIII	GTNAC	2 cut(s)	284, 854
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	995
MlyI	GAGTC	4 cut(s)	199, 590, 640, 734
MmeI	TCCRAC	2 cut(s)	343, 786
MnlI	CCTC	5 cut(s)	98, 402, 574, 613, 987
MseI	TTAA	2 cut(s)	779, 981
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	989
MwoI	GCNNNNNNNGC	5 cut(s)	242, 251, 503, 542, 554
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	922
NmuCI	GTSAC	1 cut(s)	854
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	2 cut(s)	677, 864
PfeI	GAWTC	4 cut(s)	257, 641, 668, 712
PflMI	CCANNNNNTGG	1 cut(s)	805
PkrI	GCNGC	7 cut(s)	244, 344, 430, 499, 544, 547, 559
PleI	GAGTC	4 cut(s)	198, 589, 640, 734
PpsI	GAGTC	4 cut(s)	198, 589, 640, 734
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	922
PspPI	GGNCC	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	779, 981
SatI	GCNGC	7 cut(s)	243, 343, 429, 498, 543, 546, 558
Sau96I	GGNCC	1 cut(s)	860
SchI	GAGTC	4 cut(s)	199, 590, 640, 734
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	995
SfaNI	GCATC	3 cut(s)	359, 493, 523
SfcI	CTRYAG	2 cut(s)	543, 707
SinI	GGWCC	1 cut(s)	860
SmlI	CTYRAG	3 cut(s)	237, 249, 524
SmoI	CTYRAG	3 cut(s)	237, 249, 524
SspMI	CTAG	1 cut(s)	635
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	3 cut(s)	382, 818, 860
TaiI	ACGT	2 cut(s)	208, 370
TaqI	TCGA	6 cut(s)	222, 386, 644, 671, 693, 903
TfiI	GAWTC	4 cut(s)	257, 641, 668, 712
Tru1I	TTAA	2 cut(s)	779, 981
Tru9I	TTAA	2 cut(s)	779, 981
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	7 cut(s)	242, 342, 428, 497, 542, 545, 557
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	3 cut(s)	74, 721, 736
TspGWI	ACGGA	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	860
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.