Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Forward (+)

32356530 .. 32357360

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG147100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGACTGCACAGTATGAGAAGAAAAAATCATTAAAAAAATCAAAAAGGTTTGTACAGGAAGTCATTCATTCTTTCTTCATGCATTCAGGTAGGGCAGTTGGTTGTGAAGCCCCACCAGAGACAAGAACGACTAGAACTAGCTCAGGAAGAAAGCGATTCTCGTCTTCACCTTTCAGAGGTGTAAGGCAAAGAAAATATGGTAAATGGGCTGCTGAGATTCGAGATCCTATCAAAGGTGGCCGACTTTGGTTGGGTACGTACGCCACTGCCGAGGAAGCTTCCCAGGCTTACGAGACCATGAGGTGTAAGTTCGATGAAATTTTGAGGGCCACTACAACCAGTATTTCTGACAAAAACAACAAAGATGGCAAGAGTAATTCTGACCACGAACACCTATTTCTTTTAAGAAAAGCAACTCCAATAACAGCTTCCAACTCTGGTGGCAACGGCCTTTTGTCCCATAAGGGATCTCCGGTTGCGGTTCTTGATTTGGGAAAGAATGCGGATTCAGACAAGGAAAACATTGGCACTAATAATGTTGGACAACTGCGGATACCATTGGACTTGAGTTTCCTGGATGAAGCATTGCAGTCTCTCCCCACTGATCAGCAACAGCAAGACGTCTTCAACTTTGTACCAGATAATGAGGAGCTTGACAAACTTGCCTCCTCCATTGCCTCCTCCTCTTTAGAGGAACTTGGTAAGTATTTTGACGGAATGTATTGTAGCATTGATGATATAAAGATCGGTGGAGTTGATGATGATAACCCCACCAATCTTCCTGACTGTGACGACTTTGACGATATTCTAATAGTTCAACATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

276

Amino Acids

30.67

Weight (kDa)

5.6

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	59 - 106	8.6e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	627
AciI	CCGC	3 cut(s)	482, 506, 553
AclWI	GGATC	2 cut(s)	221, 478
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	4 cut(s)	57, 259, 263, 639
AfiI	CCNNNNNNNGG	2 cut(s)	179, 236
AgsI	TTSAA	2 cut(s)	631, 821
AjnI	CCWGG	2 cut(s)	285, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	4 cut(s)	144, 281, 431, 655
AluI	AGCT	4 cut(s)	144, 281, 431, 655
Alw26I	GTCTC	3 cut(s)	116, 290, 600
AlwI	GGATC	2 cut(s)	221, 478
AoxI	GGCC	3 cut(s)	241, 330, 451
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	159, 619
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	2 cut(s)	287, 578
BciVI	GTATCC	1 cut(s)	549
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	3 cut(s)	116, 290, 600
BfaI	CTAG	3 cut(s)	135, 141, 829
BfuI	GTATCC	1 cut(s)	549
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	287, 578
BmgT120I	GGNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	287, 578
BpiI	GAAGAC	2 cut(s)	159, 619
Bpu10I	CCTNAGC	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	589
BsaAI	YACGTR	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	273, 285
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 236
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	587, 675
BseBI	CCWGG	2 cut(s)	287, 578
BseDI	CCNNGG	2 cut(s)	273, 285
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	2 cut(s)	179, 236
BseMI	GCAATG	2 cut(s)	587, 675
BseMII	CTCAG	2 cut(s)	159, 207
BseNI	ACTGG	1 cut(s)	342
BseRI	GAGGAG	4 cut(s)	661, 665, 673, 676
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	243, 332, 453
BsiSI	CCGG	1 cut(s)	476
BsiWI	CGTACG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	179, 236
BsmAI	GTCTC	3 cut(s)	116, 290, 600
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	2 cut(s)	85, 508
BsnI	GGCC	3 cut(s)	243, 332, 453
Bso31I	GGTCTC	1 cut(s)	290
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	226, 470, 607, 747
BspACI	CCGC	3 cut(s)	482, 506, 553
BspANI	GGCC	3 cut(s)	243, 332, 453
BspCNI	CTCAG	2 cut(s)	158, 208
BspPI	GGATC	2 cut(s)	221, 478
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	587, 675
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	273, 285
BssMI	GATC	4 cut(s)	226, 470, 607, 747
BssNI	GRCGYC	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	287, 578
Bst4CI	ACNGT	2 cut(s)	15, 791
BstACI	GRCGYC	1 cut(s)	624
BstAUI	TGTACA	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	145, 216
BstENI	CCTNNNNNAGG	2 cut(s)	177, 234
BstF5I	GGATG	1 cut(s)	586
BstKTI	GATC	4 cut(s)	229, 473, 610, 750
BstMAI	GTCTC	3 cut(s)	116, 290, 600
BstMBI	GATC	4 cut(s)	226, 470, 607, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 287
BstNI	CCWGG	2 cut(s)	287, 578
BstSCI	CCNGG	2 cut(s)	285, 576
BstSNI	TACGTA	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	159, 619
BstX2I	RGATCY	2 cut(s)	226, 470
BstYI	RGATCY	2 cut(s)	226, 470
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	3 cut(s)	243, 332, 453
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 603
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	4 cut(s)	56, 258, 262, 638
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	2 cut(s)	82, 301
CviQI	GTAC	4 cut(s)	56, 258, 262, 638
DdeI	CTNAG	2 cut(s)	145, 216
DpnI	GATC	4 cut(s)	228, 472, 609, 749
DpnII	GATC	4 cut(s)	226, 470, 607, 747
EaeI	YGGCCR	1 cut(s)	241
Eco105I	TACGTA	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	290
EcoNI	CCTNNNNNAGG	2 cut(s)	177, 234
EcoRII	CCWGG	2 cut(s)	285, 576
EcoT22I	ATGCAT	1 cut(s)	87
FaeI	CATG	2 cut(s)	85, 304
FaiI	YATR	7 cut(s)	18, 83, 201, 302, 465, 743, 825
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	81, 300
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	3 cut(s)	135, 141, 829
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	243, 332, 453
HapII	CCGG	1 cut(s)	476
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	2 cut(s)	85, 304
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	3 cut(s)	159, 220, 509
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	179, 352, 385, 514
Hpy188III	TCNNGA	4 cut(s)	147, 224, 488, 785
HpyCH4III	ACNGT	2 cut(s)	15, 791
HpyCH4IV	ACGT	2 cut(s)	260, 624
HpyCH4V	TGCA	3 cut(s)	11, 85, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 287
HpyF3I	CTNAG	2 cut(s)	145, 216
HpySE526I	ACGT	2 cut(s)	260, 624
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	2 cut(s)	85, 304
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	226, 470, 607, 747
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	135, 141, 829
MaeII	ACGT	2 cut(s)	260, 624
MaeIII	GTNAC	1 cut(s)	791
MalI	GATC	4 cut(s)	228, 472, 609, 749
MboI	GATC	4 cut(s)	226, 470, 607, 747
MboII	GAAGA	6 cut(s)	34, 70, 159, 162, 619, 773
MflI	RGATCY	2 cut(s)	226, 470
MluCI	AATT	2 cut(s)	321, 379
MmeI	TCCRAC	2 cut(s)	459, 523
Mph1103I	ATGCAT	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	35, 407
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	2 cut(s)	287, 578
Mva1269I	GAATGC	2 cut(s)	85, 508
MvaI	CCWGG	2 cut(s)	287, 578
MwoI	GCNNNNNNNGC	2 cut(s)	278, 287
NdeII	GATC	4 cut(s)	226, 470, 607, 747
NlaIII	CATG	2 cut(s)	85, 304
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	791
NsiI	ATGCAT	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 801
PctI	GAATGC	2 cut(s)	85, 508
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	159, 220, 509
Pfl23II	CGTACG	1 cut(s)	261
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	285, 576
PspGI	CCWGG	2 cut(s)	285, 576
PspLI	CGTACG	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	226, 470
RsaI	GTAC	4 cut(s)	57, 259, 263, 639
RsaNI	GTAC	4 cut(s)	56, 258, 262, 638
SaqAI	TTAA	2 cut(s)	35, 407
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	226, 470, 607, 747
Sau96I	GGNCC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	287, 578
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
SnaBI	TACGTA	1 cut(s)	261
Sse9I	AATT	2 cut(s)	321, 379
SsiI	CCGC	3 cut(s)	482, 506, 553
SspMI	CTAG	3 cut(s)	135, 141, 829
StyD4I	CCNGG	2 cut(s)	285, 576
TaaI	ACNGT	2 cut(s)	15, 791
TaiI	ACGT	2 cut(s)	263, 627
TaqI	TCGA	2 cut(s)	223, 315
TasI	AATT	2 cut(s)	321, 379
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	3 cut(s)	159, 220, 509
Tru1I	TTAA	2 cut(s)	35, 407
Tru9I	TTAA	2 cut(s)	35, 407
TscAI	CASTG	2 cut(s)	274, 610
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	4 cut(s)	59, 70, 333, 597
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	274, 610
XagI	CCTNNNNNAGG	2 cut(s)	177, 234
XapI	RAATTY	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	3 cut(s)	135, 141, 829
ZraI	GACGTC	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.