Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Forward (+)

28435472 .. 28436530

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37798

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTGTTTCTGTATTTTGGAGAAGGAATCTACACTTGATAGAATTAGTCTAAAAACAATGTCAAGGCCTTCATTGAATCAACGAAAACACAAGTCCAAGCAGTCGTCTAAGAGACGAGAATTTCATGCTCATAATGAAGATAACAAAGTCTTGACAAGAAAAGTCCGGATAATGTTTAACGACCCCGATGCTACTGATTCTTCATCCTCGAGCGAAGATGAAACGATGGAGACTGCACAGTATGAGAAGAAAAAATCATTAAAAAAATCAAAAAGGTTTGTACAGGAAGTCATTCATTCTTTCTTCATGCATTCAGGTAGGGCAGTTGGTTGTGAAGCCCCACCAGAGACAAGAACGACTAGAACTAGCTCAGGAAGAAAGCGATTCTCGTCTTCACCTTTCAGAGGTGTAAGGCAAAGAAAATATGGTAAATGGGCTGCTGAGATTCGAGATCCTATCAAAGGTGGCCGACTTTGGTTGGGTACGTACGCCACTGCCGAGGAAGCTTCCCAGGCTTACGAGACCATGAGGTGTAAGTTCGATGAAATTTTGAGGGCCACTACAACCAGTATTTCTGACAAAAACAACAAAGATGACAAGAGTAATTCTGACCACGAACACCTATTTCTTTTAAGAAAAGCAACTCCAATAACAGCTTCCAACTCTGGTGGCAACGCCCTTTTGTCCCATAAGGGACCTCCGGTTGCGGTTCTTGATTTCGGAAAGAATGCGGATTCAGACAAGGAAAACATTGGCACTAATAATGTTGGACAACTGCGGATACCATTGGACTTGAGTTTCCTGGATGAAGCATTGCAGTCTCTCCCCAGTGATCAGCAACAGCAAGACGTCGACTTCAACTTTGTACCAGATAATGAGGAGCTTGACAAACTTGCCTCCTCCATTGCCTCCTCCTCTTTAGAGGAACTTGGTAAGTATTTTGACGGAATGTATTGTAGCATTGATGATATAAAGATCGGTGGAGTTGATGATGATAACCCCACCAATCTTCCTGACTGTAACGACTTTGACGATATTCTAATAGTTCAATCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

352

Amino Acids

39.58

Weight (kDa)

6.12

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	134 - 181	1.2e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	852
AccI	GTMKAC	1 cut(s)	852
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	3 cut(s)	707, 731, 778
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	119, 546
AcyI	GRCGYC	1 cut(s)	849
AfaI	GTAC	4 cut(s)	282, 484, 488, 867
AfiI	CCNNNNNNNGG	2 cut(s)	404, 461
AgsI	TTSAA	3 cut(s)	76, 859, 1049
AjnI	CCWGG	2 cut(s)	510, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	640, 672
AluBI	AGCT	4 cut(s)	369, 506, 656, 883
AluI	AGCT	4 cut(s)	369, 506, 656, 883
Alw26I	GTCTC	5 cut(s)	106, 224, 341, 515, 825
AlwI	GGATC	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	3 cut(s)	65, 466, 555
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	119, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	845, 877
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	555, 695
AsuHPI	GGTGA	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	2 cut(s)	512, 803
BciVI	GTATCC	1 cut(s)	774
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	5 cut(s)	106, 224, 341, 515, 825
BfaI	CTAG	2 cut(s)	360, 366
BfuI	GTATCC	1 cut(s)	774
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	512, 803
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	555, 695
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	2 cut(s)	512, 803
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	814
BsaAI	YACGTR	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	498, 510
BsaWI	WCCGGW	2 cut(s)	165, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 461
Bse1I	ACTGG	2 cut(s)	567, 828
Bse3DI	GCAATG	2 cut(s)	812, 903
BseAI	TCCGGA	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	512, 803
BseDI	CCNNGG	2 cut(s)	498, 510
BseGI	GGATG	2 cut(s)	203, 811
BseLI	CCNNNNNNNGG	2 cut(s)	404, 461
BseMI	GCAATG	2 cut(s)	812, 903
BseMII	CTCAG	2 cut(s)	384, 432
BseNI	ACTGG	2 cut(s)	567, 828
BseRI	GAGGAG	4 cut(s)	889, 893, 901, 904
BseXI	GCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	67, 468, 557
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	166, 701
BsiWI	CGTACG	1 cut(s)	486
BslFI	GGGAC	2 cut(s)	670, 708
BslI	CCNNNNNNNGG	2 cut(s)	404, 461
BsmAI	GTCTC	5 cut(s)	106, 224, 341, 515, 825
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	670, 708
BsmI	GAATGC	2 cut(s)	310, 733
BsnI	GGCC	3 cut(s)	67, 468, 557
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	208
Bsp13I	TCCGGA	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	451, 832, 975
BspACI	CCGC	3 cut(s)	707, 731, 778
BspANI	GGCC	3 cut(s)	67, 468, 557
BspCNI	CTCAG	2 cut(s)	383, 433
BspEI	TCCGGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	812, 903
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	567, 828
BssECI	CCNNGG	2 cut(s)	498, 510
BssMI	GATC	3 cut(s)	451, 832, 975
BssNI	GRCGYC	1 cut(s)	849
Bst2UI	CCWGG	2 cut(s)	512, 803
Bst4CI	ACNGT	2 cut(s)	240, 1019
BstACI	GRCGYC	1 cut(s)	849
BstAUI	TGTACA	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	486
BstDEI	CTNAG	3 cut(s)	108, 370, 441
BstENI	CCTNNNNNAGG	2 cut(s)	402, 459
BstF5I	GGATG	2 cut(s)	203, 811
BstKTI	GATC	3 cut(s)	454, 835, 978
BstMAI	GTCTC	5 cut(s)	106, 224, 341, 515, 825
BstMBI	GATC	3 cut(s)	451, 832, 975
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 512
BstNI	CCWGG	2 cut(s)	512, 803
BstSCI	CCNGG	2 cut(s)	510, 801
BstSNI	TACGTA	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	3 cut(s)	67, 468, 557
BtsCI	GGATG	2 cut(s)	203, 811
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	492, 835
Cfr13I	GGNCC	2 cut(s)	555, 695
Csp6I	GTAC	4 cut(s)	281, 483, 487, 866
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	3 cut(s)	125, 307, 526
CviQI	GTAC	4 cut(s)	281, 483, 487, 866
DdeI	CTNAG	3 cut(s)	108, 370, 441
DpnI	GATC	3 cut(s)	453, 834, 977
DpnII	GATC	3 cut(s)	451, 832, 975
EaeI	YGGCCR	1 cut(s)	466
Eco105I	TACGTA	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	208
EcoNI	CCTNNNNNAGG	2 cut(s)	402, 459
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	510, 801
EcoT22I	ATGCAT	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	128, 310, 529
FaiI	YATR	8 cut(s)	126, 132, 243, 308, 426, 527, 690, 971
FaqI	GGGAC	2 cut(s)	670, 708
FatI	CATG	3 cut(s)	124, 306, 525
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	190, 818
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	360, 366
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	67, 468, 557
HapII	CCGG	2 cut(s)	166, 701
Hin1I	GRCGYC	1 cut(s)	849
Hin1II	CATG	3 cut(s)	128, 310, 529
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	6 cut(s)	26, 76, 197, 384, 445, 734
HpaII	CCGG	2 cut(s)	166, 701
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	853
Hpy188I	TCNGA	5 cut(s)	404, 577, 610, 722, 739
Hpy188III	TCNNGA	6 cut(s)	151, 166, 372, 449, 713, 1013
Hpy8I	GTNNAC	1 cut(s)	853
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	2 cut(s)	16, 78
HpyCH4III	ACNGT	2 cut(s)	240, 1019
HpyCH4IV	ACGT	2 cut(s)	485, 849
HpyCH4V	TGCA	3 cut(s)	236, 310, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 512
HpyF3I	CTNAG	3 cut(s)	108, 370, 441
HpySE526I	ACGT	2 cut(s)	485, 849
Hsp92I	GRCGYC	1 cut(s)	849
Hsp92II	CATG	3 cut(s)	128, 310, 529
Kpn2I	TCCGGA	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	451, 832, 975
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	360, 366
MaeII	ACGT	2 cut(s)	485, 849
MaeIII	GTNAC	1 cut(s)	1019
MalI	GATC	3 cut(s)	453, 834, 977
MboI	GATC	3 cut(s)	451, 832, 975
MboII	GAAGA	8 cut(s)	149, 192, 227, 259, 295, 384, 387, 1001
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	4 cut(s)	42, 119, 546, 604
MmeI	TCCRAC	2 cut(s)	684, 748
Mph1103I	ATGCAT	1 cut(s)	312
MroI	TCCGGA	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	3 cut(s)	177, 260, 632
MspI	CCGG	2 cut(s)	166, 701
MspR9I	CCNGG	2 cut(s)	512, 803
Mva1269I	GAATGC	2 cut(s)	310, 733
MvaI	CCWGG	2 cut(s)	512, 803
MwoI	GCNNNNNNNGC	2 cut(s)	503, 512
NdeII	GATC	3 cut(s)	451, 832, 975
NlaIII	CATG	3 cut(s)	128, 310, 529
NlaIV	GGNNCC	1 cut(s)	696
NmeAIII	GCCGAG	1 cut(s)	523
NsiI	ATGCAT	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	2 cut(s)	495, 1029
PctI	GAATGC	2 cut(s)	310, 733
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	6 cut(s)	26, 76, 197, 384, 445, 734
Pfl23II	CGTACG	1 cut(s)	486
PfoI	TCCNGGA	1 cut(s)	801
PkrI	GCNGC	1 cut(s)	439
Ppu21I	YACGTR	1 cut(s)	486
PpuMI	RGGWCCY	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	2 cut(s)	510, 801
PspGI	CCWGG	2 cut(s)	510, 801
PspLI	CGTACG	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	2 cut(s)	555, 695
PspPPI	RGGWCCY	1 cut(s)	695
PspXI	VCTCGAGB	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	4 cut(s)	282, 484, 488, 867
RsaNI	GTAC	4 cut(s)	281, 483, 487, 866
SalI	GTCGAC	1 cut(s)	851
SaqAI	TTAA	3 cut(s)	177, 260, 632
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	3 cut(s)	451, 832, 975
Sau96I	GGNCC	2 cut(s)	555, 695
ScrFI	CCNGG	2 cut(s)	512, 803
SfaNI	GCATC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	208, 793
SmoI	CTYRAG	2 cut(s)	208, 793
SnaBI	TACGTA	1 cut(s)	486
Sse9I	AATT	4 cut(s)	42, 119, 546, 604
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	3 cut(s)	707, 731, 778
SspMI	CTAG	2 cut(s)	360, 366
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	510, 801
TaaI	ACNGT	2 cut(s)	240, 1019
TaiI	ACGT	2 cut(s)	488, 852
TaqI	TCGA	4 cut(s)	209, 448, 540, 852
TasI	AATT	4 cut(s)	42, 119, 546, 604
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	6 cut(s)	26, 76, 197, 384, 445, 734
Tru1I	TTAA	3 cut(s)	177, 260, 632
Tru9I	TTAA	3 cut(s)	177, 260, 632
TscAI	CASTG	2 cut(s)	499, 835
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	9 cut(s)	60, 113, 150, 192, 234, 284, 295, 558, 822
TspGWI	ACGGA	1 cut(s)	960
TspRI	CASTG	2 cut(s)	499, 835
VpaK11BI	GGWCC	1 cut(s)	695
XagI	CCTNNNNNAGG	2 cut(s)	402, 459
XapI	RAATTY	2 cut(s)	119, 546
XhoI	CTCGAG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	2 cut(s)	360, 366
ZraI	GACGTC	1 cut(s)	850
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.