Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003798

Physical Location & Seq

Genomic Coordinates Reverse (-)

25725455 .. 25727701

Gene Structure 2247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGAGCTAAGAGAAACACTCTATCGTCCCTTCCTCAAGAAACCCAACCTTTGAGGAAAGTCCGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTTAAGGTTCCTAAGCCAAGGAAAATGAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATGGAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAGATAGCTGTGTCAGCTTCTCCTGCTGTTCCTAGGAAGAAGCCTGTTGGTGTTAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGAAAACTAGGACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAAGCTTGAGTTTGATGCTATTGTTGCTGGAAATGTGTCCACTACTAAACGTGATGTTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGTTGAGCAAGATGACACTTCTGCATCAGCTCTCACTTGTGTCAACAACCCTGATGACGTCTCGACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTTGTTCGATTTCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCAACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGATTTCGGCTTGCTTGATGACATTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGCGGATGTTGAAGATCTTCAGCTAGCTGACTCTAGTTTCGGTTTCCTTGATCAACTTGCTCCTATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

324

Amino Acids

35.57

Weight (kDa)

4.57

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	112 - 158	1.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25470 AT1G25470 AT1G68550 AT1G68550 AT3G25890 AT3G25890
fragaria_vesca	FvH4_4g10820 FvH4_4g27491
malus_domestica	MD13G1042600.v1.1 MD16G1043500.v1.1
prunus_persica	Prupe.1G310100_v2.0.a1
pyrus_communis	pycom13g03730 pycom16g03760
rosa_chinensis	RchiOBHm_Chr4g0406661 RchiOBHm_Chr4g0435261
rosa_laevigata	RLG00000006603 RLG00000008761
rosa_multiflora	Rmu_sc0002132.1_g000068 Rmu_sc0002774.1_g000001 Rmu_sc0019587.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351510 Rroxscaffold_5G00376550
rosa_rugosa	Rorug04G0072800 Rorug04G0284200
rosa_samantha	Rh4AG140100 Rh4AG339400 Rh4BG137200 Rh4BG347800 Rh4CG147100 Rh4CG362500 Rh4DG134200 Rh4DG341900
rosa_wichuraiana	Rw4G011410 Rw4G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	630
AccII	CGCG	1 cut(s)	782
AciI	CCGC	2 cut(s)	782, 872
AclI	AACGTT	1 cut(s)	689
AclWI	GGATC	3 cut(s)	128, 383, 715
AcuI	CTGAAG	1 cut(s)	872
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	2 cut(s)	280, 421
AfiI	CCNNNNNNNGG	2 cut(s)	674, 731
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	437, 824, 881
AloI	GAACNNNNNNTCC	2 cut(s)	677, 709
Alw26I	GTCTC	2 cut(s)	527, 634
AlwI	GGATC	3 cut(s)	128, 383, 715
ApeKI	GCWGC	3 cut(s)	374, 443, 965
ArsI	GACNNNNNNTTYG	4 cut(s)	749, 781, 890, 922
Asp700I	GAANNNNTTC	1 cut(s)	885
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	549
AsuII	TTCGAA	1 cut(s)	831
AsuNHI	GCTAGC	1 cut(s)	892
AvaII	GGWCC	1 cut(s)	842
AvrII	CCTAGG	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	361, 430
BccI	CCATC	1 cut(s)	284
BclI	TGATCA	2 cut(s)	787, 919
BcoDI	GTCTC	2 cut(s)	527, 634
BfaI	CTAG	7 cut(s)	159, 327, 405, 537, 761, 893, 903
BfmI	CTRYAG	1 cut(s)	716
BfrI	CTTAAG	1 cut(s)	176
BglII	AGATCT	1 cut(s)	883
BisI	GCNGC	3 cut(s)	375, 444, 966
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	3 cut(s)	376, 445, 967
BmcAI	AGTACT	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	3 cut(s)	448, 469, 602
BmtI	GCTAGC	1 cut(s)	896
BplI	GAGNNNNNCTC	4 cut(s)	58, 90, 253, 285
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	831
BpuEI	CTTGAG	2 cut(s)	75, 491
BsaHI	GRCGYC	1 cut(s)	627
BsaJI	CCNNGG	2 cut(s)	191, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	674, 731
BseDI	CCNNGG	2 cut(s)	191, 326
BseGI	GGATG	2 cut(s)	790, 880
BseLI	CCNNNNNNNGG	2 cut(s)	674, 731
BseMII	CTCAG	4 cut(s)	249, 284, 369, 522
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	2 cut(s)	361, 430
Bsh1236I	CGCG	1 cut(s)	782
Bsh1285I	CGRYCG	1 cut(s)	636
BsiEI	CGRYCG	1 cut(s)	636
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	674, 731
BsmAI	GTCTC	2 cut(s)	527, 634
BsmBI	CGTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	831
Bsp143I	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
BspACI	CCGC	2 cut(s)	782, 872
BspCNI	CTCAG	4 cut(s)	250, 283, 370, 523
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	896
BspPI	GGATC	3 cut(s)	128, 383, 715
BspQI	GCTCTTC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	831
BspTI	CTTAAG	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	191, 326
BssMI	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
BssNI	GRCGYC	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	191, 326
Bst4CI	ACNGT	4 cut(s)	24, 278, 637, 842
Bst6I	CTCTTC	2 cut(s)	50, 165
BstACI	GRCGYC	1 cut(s)	627
BstAFI	CTTAAG	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	809, 894
BstDEI	CTNAG	7 cut(s)	63, 186, 258, 270, 378, 462, 531
BstF5I	GGATG	2 cut(s)	790, 880
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	6 cut(s)	136, 391, 723, 790, 886, 922
BstMAI	GTCTC	2 cut(s)	527, 634
BstMBI	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 317, 449, 458, 488, 647
BstSFI	CTRYAG	1 cut(s)	716
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	2 cut(s)	361, 430
BstX2I	RGATCY	3 cut(s)	388, 720, 883
BstYI	RGATCY	3 cut(s)	388, 720, 883
BtsCI	GGATG	2 cut(s)	790, 880
Cac8I	GCNNGC	2 cut(s)	809, 894
Cfr13I	GGNCC	1 cut(s)	842
Csp6I	GTAC	2 cut(s)	279, 420
CviQI	GTAC	2 cut(s)	279, 420
DdeI	CTNAG	7 cut(s)	63, 186, 258, 270, 378, 462, 531
DpnI	GATC	6 cut(s)	135, 390, 722, 789, 885, 921
DpnII	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
Eam1104I	CTCTTC	2 cut(s)	50, 165
EarI	CTCTTC	2 cut(s)	50, 165
Eco130I	CCWWGG	2 cut(s)	191, 326
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	872
EcoT14I	CCWWGG	2 cut(s)	191, 326
ErhI	CCWWGG	2 cut(s)	191, 326
Esp3I	CGTCTC	1 cut(s)	634
FaiI	YATR	4 cut(s)	141, 236, 456, 973
FaqI	GGGAC	1 cut(s)	67
FbaI	TGATCA	2 cut(s)	787, 919
Fnu4HI	GCNGC	3 cut(s)	375, 444, 966
FokI	GGATG	2 cut(s)	797, 887
Fsp4HI	GCNGC	3 cut(s)	375, 444, 966
FspBI	CTAG	7 cut(s)	159, 327, 405, 537, 761, 893, 903
GluI	GCNGC	3 cut(s)	375, 444, 966
Hin1I	GRCGYC	1 cut(s)	627
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	2 cut(s)	450, 467
HinfI	GANTC	3 cut(s)	152, 828, 899
HphI	GGTGA	1 cut(s)	549
Hpy166II	GTNNAC	2 cut(s)	504, 613
Hpy188I	TCNGA	3 cut(s)	247, 259, 532
Hpy188III	TCNNGA	5 cut(s)	92, 215, 272, 434, 631
Hpy8I	GTNNAC	2 cut(s)	504, 613
HpyAV	CCTTC	3 cut(s)	95, 240, 264
HpyCH4III	ACNGT	4 cut(s)	24, 278, 637, 842
HpyCH4IV	ACGT	4 cut(s)	205, 514, 627, 689
HpyCH4V	TGCA	2 cut(s)	593, 965
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 317, 449, 458, 488, 647
HpyF3I	CTNAG	7 cut(s)	63, 186, 258, 270, 378, 462, 531
HpySE526I	ACGT	4 cut(s)	205, 514, 627, 689
Hsp92I	GRCGYC	1 cut(s)	627
Ksp22I	TGATCA	2 cut(s)	787, 919
Kzo9I	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	4 cut(s)	646, 655, 748, 934
Lsp1109I	GCAGC	2 cut(s)	361, 430
LweI	GCATC	3 cut(s)	448, 469, 602
MaeI	CTAG	7 cut(s)	159, 327, 405, 537, 761, 893, 903
MaeII	ACGT	4 cut(s)	205, 514, 627, 689
MaeIII	GTNAC	1 cut(s)	852
MalI	GATC	6 cut(s)	135, 390, 722, 789, 885, 921
MboI	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
MflI	RGATCY	3 cut(s)	388, 720, 883
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	2 cut(s)	668, 677
MnlI	CCTC	6 cut(s)	99, 102, 160, 166, 739, 788
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	5 cut(s)	51, 177, 222, 396, 953
MspCI	CTTAAG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	6 cut(s)	308, 317, 449, 458, 488, 647
NdeII	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
NheI	GCTAGC	1 cut(s)	892
NlaIV	GGNNCC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	831
PciSI	GCTCTTC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	211, 633
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	152, 828
PkrI	GCNGC	3 cut(s)	376, 445, 967
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
Psp1406I	AACGTT	1 cut(s)	689
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	842
PsuI	RGATCY	3 cut(s)	388, 720, 883
RsaI	GTAC	2 cut(s)	280, 421
RsaNI	GTAC	2 cut(s)	279, 420
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	5 cut(s)	51, 177, 222, 396, 953
SatI	GCNGC	3 cut(s)	375, 444, 966
Sau3AI	GATC	6 cut(s)	133, 388, 720, 787, 883, 919
Sau96I	GGNCC	1 cut(s)	842
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	1 cut(s)	893
SfaNI	GCATC	3 cut(s)	448, 469, 602
SfcI	CTRYAG	1 cut(s)	716
SfuI	TTCGAA	1 cut(s)	831
SinI	GGWCC	1 cut(s)	842
SmlI	CTYRAG	3 cut(s)	90, 176, 470
SmoI	CTYRAG	3 cut(s)	90, 176, 470
SsiI	CCGC	2 cut(s)	782, 872
SspMI	CTAG	7 cut(s)	159, 327, 405, 537, 761, 893, 903
StyI	CCWWGG	2 cut(s)	191, 326
TaaI	ACNGT	4 cut(s)	24, 278, 637, 842
TaiI	ACGT	4 cut(s)	208, 517, 630, 692
TaqI	TCGA	6 cut(s)	632, 696, 702, 768, 831, 864
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	152, 828
Tru1I	TTAA	5 cut(s)	51, 177, 222, 396, 953
Tru9I	TTAA	5 cut(s)	51, 177, 222, 396, 953
TseI	GCWGC	3 cut(s)	374, 443, 965
TspDTI	ATGAA	3 cut(s)	215, 516, 960
TspGWI	ACGGA	1 cut(s)	107
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	842
XmaJI	CCTAGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	7 cut(s)	159, 327, 405, 537, 761, 893, 903
ZraI	GACGTC	1 cut(s)	628
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.