ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04895 |
| fragaria_vesca | FvH4_5g28161 FvH4_5g28161 FvH4_5g28161 FvH4_5g28161 FvH4_5g28161 |
| malus_domestica | MD04G1078800.v1.1 |
| prunus_persica | Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 |
| pyrus_communis | pycom04g07060 |
| rosa_chinensis | RchiOBHm_Chr4g0406081 |
| rosa_laevigata | RLG00000008798 RLG00000034681 |
| rosa_multiflora | Rmu_sc0000306.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00121020 Rroxscaffold_5G00350810 |
| rosa_rugosa | Rorug04G0065500 Rorug04G0065600 |
| rosa_samantha | Rh4AG135700 Rh4BG132800 Rh4CG143700 Rh4DG130800 Rh5CG366800 |
| rosa_wichuraiana | Rw4G011060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1011 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2680 |
| Acc16I | TGCGCA | 1 cut(s) | 296 |
| Acc36I | ACCTGC | 1 cut(s) | 2068 |
| AccB1I | GGYRCC | 1 cut(s) | 2264 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2611 |
| AccI | GTMKAC | 1 cut(s) | 1894 |
| AccII | CGCG | 1 cut(s) | 1510 |
| AccIII | TCCGGA | 1 cut(s) | 3059 |
| AciI | CCGC | 7 cut(s) | 79, 147, 177, 466, 688, 751, 2009 |
| AcoI | YGGCCR | 5 cut(s) | 467, 895, 1387, 2704, 3091 |
| AcsI | RAATTY | 4 cut(s) | 2096, 2191, 2482, 3239 |
| AcuI | CTGAAG | 3 cut(s) | 656, 747, 2489 |
| AfaI | GTAC | 5 cut(s) | 212, 925, 1063, 1335, 3029 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 168, 1676, 2090, 2243, 2244, 2611, 2763, 2767 |
| AflII | CTTAAG | 3 cut(s) | 1658, 2954, 3227 |
| AgeI | ACCGGT | 1 cut(s) | 2819 |
| AjnI | CCWGG | 8 cut(s) | 1502, 1597, 1960, 2644, 2706, 2762, 2874, 3338 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 134, 166 |
| Alw21I | GWGCWC | 3 cut(s) | 594, 1276, 2667 |
| Alw26I | GTCTC | 7 cut(s) | 49, 339, 827, 992, 1853, 2207, 2666 |
| Alw44I | GTGCAC | 1 cut(s) | 2663 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1604 |
| Ama87I | CYCGRG | 1 cut(s) | 10 |
| Aor13HI | TCCGGA | 1 cut(s) | 3059 |
| AoxI | GGCC | 9 cut(s) | 229, 446, 467, 895, 1387, 2704, 3091, 3107, 3336 |
| ApaLI | GTGCAC | 1 cut(s) | 2663 |
| ApoI | RAATTY | 4 cut(s) | 2096, 2191, 2482, 3239 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 2056, 2088, 3434 |
| AsiGI | ACCGGT | 1 cut(s) | 2819 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3239 |
| AspLEI | GCGC | 2 cut(s) | 297, 1510 |
| AspS9I | GGNCC | 3 cut(s) | 229, 307, 2872 |
| AsuC2I | CCSGG | 1 cut(s) | 1293 |
| AsuHPI | GGTGA | 7 cut(s) | 559, 593, 714, 1007, 1691, 2789, 3134 |
| AvaI | CYCGRG | 1 cut(s) | 10 |
| AvaII | GGWCC | 2 cut(s) | 307, 2872 |
| BaeGI | GKGCMC | 1 cut(s) | 2667 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2808, 2841 |
| BalI | TGGCCA | 2 cut(s) | 1389, 2706 |
| BamHI | GGATCC | 1 cut(s) | 2923 |
| BanI | GGYRCC | 1 cut(s) | 2264 |
| BbsI | GAAGAC | 3 cut(s) | 20, 1167, 1759 |
| Bbv12I | GWGCWC | 3 cut(s) | 594, 1276, 2667 |
| BccI | CCATC | 6 cut(s) | 373, 641, 1056, 2427, 2689, 2696 |
| BceAI | ACGGC | 5 cut(s) | 882, 1068, 1185, 2252, 3078 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 228, 262 |
| BciT130I | CCWGG | 8 cut(s) | 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| BciVI | GTATCC | 3 cut(s) | 331, 2836, 3067 |
| BclI | TGATCA | 2 cut(s) | 598, 2401 |
| BcnI | CCSGG | 1 cut(s) | 1293 |
| BcoDI | GTCTC | 7 cut(s) | 49, 339, 827, 992, 1853, 2207, 2666 |
| BfmI | CTRYAG | 6 cut(s) | 442, 524, 910, 2075, 2658, 3324 |
| BfrI | CTTAAG | 3 cut(s) | 1658, 2954, 3227 |
| BfuAI | ACCTGC | 1 cut(s) | 2068 |
| BfuI | GTATCC | 3 cut(s) | 331, 2836, 3067 |
| BlpI | GCTNAGC | 2 cut(s) | 1245, 2312 |
| Bme1390I | CCNGG | 9 cut(s) | 1293, 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| Bme18I | GGWCC | 2 cut(s) | 307, 2872 |
| BmeT110I | CYCGRG | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 3 cut(s) | 229, 307, 2872 |
| BmiI | GGNNCC | 7 cut(s) | 2082, 2127, 2266, 2857, 2873, 2925, 3151 |
| BmrFI | CCNGG | 9 cut(s) | 1293, 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| BmrI | ACTGGG | 2 cut(s) | 1356, 1632 |
| BmuI | ACTGGG | 2 cut(s) | 1356, 1632 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3363 |
| BpiI | GAAGAC | 3 cut(s) | 20, 1167, 1759 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 182, 214, 1219, 1251, 3368, 3400 |
| BpmI | CTGGAG | 2 cut(s) | 849, 2497 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1245, 2312 |
| BpuEI | CTTGAG | 2 cut(s) | 20, 2325 |
| BpuMI | CCSGG | 1 cut(s) | 1293 |
| Bsa29I | ATCGAT | 1 cut(s) | 2165 |
| BsaAI | YACGTR | 1 cut(s) | 2810 |
| BsaI | GGTCTC | 1 cut(s) | 1853 |
| BsaJI | CCNNGG | 8 cut(s) | 898, 1502, 1503, 1711, 2610, 2644, 2762, 2866 |
| BsaWI | WCCGGW | 4 cut(s) | 546, 2122, 2819, 3059 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 168, 1676, 2090, 2243, 2244, 2611, 2763, 2767 |
| Bse118I | RCCGGY | 2 cut(s) | 763, 2819 |
| Bse1I | ACTGG | 8 cut(s) | 841, 1065, 1307, 1351, 1627, 2228, 2605, 3339 |
| Bse3DI | GCAATG | 1 cut(s) | 2275 |
| BseAI | TCCGGA | 1 cut(s) | 3059 |
| BseBI | CCWGG | 8 cut(s) | 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| BseCI | ATCGAT | 1 cut(s) | 2165 |
| BseDI | CCNNGG | 8 cut(s) | 898, 1502, 1503, 1711, 2610, 2644, 2762, 2866 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 168, 1676, 2090, 2243, 2244, 2611, 2763, 2767 |
| BseMI | GCAATG | 1 cut(s) | 2275 |
| BseMII | CTCAG | 4 cut(s) | 579, 1236, 2047, 3369 |
| BseNI | ACTGG | 8 cut(s) | 841, 1065, 1307, 1351, 1627, 2228, 2605, 3339 |
| BseRI | GAGGAG | 3 cut(s) | 691, 694, 1284 |
| BseSI | GKGCMC | 1 cut(s) | 2667 |
| BseYI | CCCAGC | 1 cut(s) | 2879 |
| BsgI | GTGCAG | 2 cut(s) | 98, 1976 |
| Bsh1236I | CGCG | 1 cut(s) | 1510 |
| BshFI | GGCC | 9 cut(s) | 231, 448, 469, 897, 1389, 2706, 3093, 3109, 3338 |
| BshNI | GGYRCC | 1 cut(s) | 2264 |
| BshTI | ACCGGT | 1 cut(s) | 2819 |
| BshVI | ATCGAT | 1 cut(s) | 2165 |
| BsiHKAI | GWGCWC | 3 cut(s) | 594, 1276, 2667 |
| BsiHKCI | CYCGRG | 1 cut(s) | 10 |
| BsiSI | CCGG | 6 cut(s) | 547, 764, 1292, 2123, 2820, 3060 |
| BslFI | GGGAC | 2 cut(s) | 396, 2377 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 168, 1676, 2090, 2243, 2244, 2611, 2763, 2767 |
| BsmAI | GTCTC | 7 cut(s) | 49, 339, 827, 992, 1853, 2207, 2666 |
| BsmFI | GGGAC | 2 cut(s) | 396, 2377 |
| BsmI | GAATGC | 5 cut(s) | 634, 905, 1246, 1973, 2740 |
| BsnI | GGCC | 9 cut(s) | 231, 448, 469, 897, 1389, 2706, 3093, 3109, 3338 |
| Bso31I | GGTCTC | 1 cut(s) | 1853 |
| BsoBI | CYCGRG | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 3 cut(s) | 594, 1276, 2667 |
| Bsp13I | TCCGGA | 1 cut(s) | 3059 |
| Bsp1407I | TGTACA | 1 cut(s) | 923 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1245, 2312 |
| Bsp19I | CCATGG | 2 cut(s) | 1711, 2866 |
| BspACI | CCGC | 7 cut(s) | 79, 147, 177, 466, 688, 751, 2009 |
| BspANI | GGCC | 9 cut(s) | 231, 448, 469, 897, 1389, 2706, 3093, 3109, 3338 |
| BspCNI | CTCAG | 4 cut(s) | 580, 1237, 2046, 3368 |
| BspDI | ATCGAT | 1 cut(s) | 2165 |
| BspEI | TCCGGA | 1 cut(s) | 3059 |
| BspFNI | CGCG | 1 cut(s) | 1510 |
| BspHI | TCATGA | 2 cut(s) | 1141, 1617 |
| BspLI | GGNNCC | 7 cut(s) | 2082, 2127, 2266, 2857, 2873, 2925, 3151 |
| BspMAI | CTGCAG | 2 cut(s) | 528, 2079 |
| BspMI | ACCTGC | 1 cut(s) | 2068 |
| BspT107I | GGYRCC | 1 cut(s) | 2264 |
| BspTI | CTTAAG | 3 cut(s) | 1658, 2954, 3227 |
| BspTNI | GGTCTC | 1 cut(s) | 1853 |
| BsrDI | GCAATG | 1 cut(s) | 2275 |
| BsrFI | RCCGGY | 2 cut(s) | 763, 2819 |
| BsrGI | TGTACA | 1 cut(s) | 923 |
| BsrI | ACTGG | 8 cut(s) | 841, 1065, 1307, 1351, 1627, 2228, 2605, 3339 |
| BssAI | RCCGGY | 2 cut(s) | 763, 2819 |
| BssECI | CCNNGG | 8 cut(s) | 898, 1502, 1503, 1711, 2610, 2644, 2762, 2866 |
| BssT1I | CCWWGG | 3 cut(s) | 1711, 2610, 2866 |
| Bst2UI | CCWGG | 8 cut(s) | 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| Bst4CI | ACNGT | 3 cut(s) | 1003, 2399, 2800 |
| Bst6I | CTCTTC | 5 cut(s) | 124, 438, 645, 2526, 3369 |
| BstAFI | CTTAAG | 3 cut(s) | 1658, 2954, 3227 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1423 |
| BstAUI | TGTACA | 1 cut(s) | 923 |
| BstBAI | YACGTR | 1 cut(s) | 2810 |
| BstDEI | CTNAG | 7 cut(s) | 588, 1245, 2033, 2312, 2594, 3159, 3355 |
| BstDSI | CCRYGG | 3 cut(s) | 898, 1711, 2866 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2088 |
| BstFNI | CGCG | 1 cut(s) | 1510 |
| BstHHI | GCGC | 2 cut(s) | 297, 1510 |
| BstMAI | GTCTC | 7 cut(s) | 49, 339, 827, 992, 1853, 2207, 2666 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 700, 1423, 2366, 3099, 3329 |
| BstNI | CCWGG | 8 cut(s) | 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| BstNSI | RCATGY | 2 cut(s) | 3271, 3412 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3363 |
| BstSCI | CCNGG | 9 cut(s) | 1291, 1502, 1597, 1960, 2644, 2706, 2762, 2874, 3338 |
| BstSFI | CTRYAG | 6 cut(s) | 442, 524, 910, 2075, 2658, 3324 |
| BstSLI | GKGCMC | 1 cut(s) | 2667 |
| BstUI | CGCG | 1 cut(s) | 1510 |
| BstV2I | GAAGAC | 3 cut(s) | 20, 1167, 1759 |
| BstX2I | RGATCY | 5 cut(s) | 1186, 2233, 2323, 2923, 2995 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 379 |
| BstYI | RGATCY | 5 cut(s) | 1186, 2233, 2323, 2923, 2995 |
| Bsu15I | ATCGAT | 1 cut(s) | 2165 |
| BsuI | GTATCC | 3 cut(s) | 331, 2836, 3067 |
| BsuRI | GGCC | 9 cut(s) | 231, 448, 469, 897, 1389, 2706, 3093, 3109, 3338 |
| BsuTUI | ATCGAT | 1 cut(s) | 2165 |
| BtgI | CCRYGG | 3 cut(s) | 898, 1711, 2866 |
| BtsI | GCAGTG | 1 cut(s) | 27 |
| BtsIMutI | CAGTG | 5 cut(s) | 27, 1072, 2404, 3332, 3399 |
| BveI | ACCTGC | 1 cut(s) | 2068 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1604 |
| CciI | TCATGA | 2 cut(s) | 1141, 1617 |
| CfoI | GCGC | 2 cut(s) | 297, 1510 |
| Cfr10I | RCCGGY | 2 cut(s) | 763, 2819 |
| Cfr13I | GGNCC | 3 cut(s) | 229, 307, 2872 |
| ClaI | ATCGAT | 1 cut(s) | 2165 |
| CseI | GACGC | 2 cut(s) | 2305, 2643 |
| CsiI | ACCWGGT | 1 cut(s) | 1597 |
| Csp6I | GTAC | 5 cut(s) | 211, 924, 1062, 1334, 3028 |
| CspAI | ACCGGT | 1 cut(s) | 2819 |
| CviQI | GTAC | 5 cut(s) | 211, 924, 1062, 1334, 3028 |
| DdeI | CTNAG | 7 cut(s) | 588, 1245, 2033, 2312, 2594, 3159, 3355 |
| DraI | TTTAAA | 1 cut(s) | 2046 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2680 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2680 |
| EaeI | YGGCCR | 5 cut(s) | 467, 895, 1387, 2704, 3091 |
| Eam1104I | CTCTTC | 5 cut(s) | 124, 438, 645, 2526, 3369 |
| EarI | CTCTTC | 5 cut(s) | 124, 438, 645, 2526, 3369 |
| EciI | GGCGGA | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 3 cut(s) | 1711, 2610, 2866 |
| Eco31I | GGTCTC | 1 cut(s) | 1853 |
| Eco32I | GATATC | 3 cut(s) | 360, 1636, 1911 |
| Eco47I | GGWCC | 2 cut(s) | 307, 2872 |
| Eco57I | CTGAAG | 3 cut(s) | 656, 747, 2489 |
| Eco88I | CYCGRG | 1 cut(s) | 10 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2088 |
| EcoRI | GAATTC | 2 cut(s) | 2096, 3239 |
| EcoRII | CCWGG | 8 cut(s) | 1502, 1597, 1960, 2644, 2706, 2762, 2874, 3338 |
| EcoRV | GATATC | 3 cut(s) | 360, 1636, 1911 |
| EcoT14I | CCWWGG | 3 cut(s) | 1711, 2610, 2866 |
| ErhI | CCWWGG | 3 cut(s) | 1711, 2610, 2866 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1320, 1352, 1767, 1799 |
| FaqI | GGGAC | 2 cut(s) | 396, 2377 |
| FauNDI | CATATG | 4 cut(s) | 1867, 2406, 2425, 2627 |
| FbaI | TGATCA | 2 cut(s) | 598, 2401 |
| FblI | GTMKAC | 1 cut(s) | 1894 |
| FspI | TGCGCA | 1 cut(s) | 296 |
| GlaI | GCGC | 2 cut(s) | 296, 1509 |
| GsaI | CCCAGC | 1 cut(s) | 2883 |
| GsuI | CTGGAG | 2 cut(s) | 849, 2497 |
| HaeIII | GGCC | 9 cut(s) | 231, 448, 469, 897, 1389, 2706, 3093, 3109, 3338 |
| HapII | CCGG | 6 cut(s) | 547, 764, 1292, 2123, 2820, 3060 |
| HgaI | GACGC | 2 cut(s) | 2305, 2643 |
| HhaI | GCGC | 2 cut(s) | 297, 1510 |
| Hin6I | GCGC | 2 cut(s) | 295, 1508 |
| HinP1I | GCGC | 2 cut(s) | 295, 1508 |
| HincII | GTYRAC | 2 cut(s) | 1359, 3345 |
| HindII | GTYRAC | 2 cut(s) | 1359, 3345 |
| HindIII | AAGCTT | 3 cut(s) | 1483, 2951, 2987 |
| HpaII | CCGG | 6 cut(s) | 547, 764, 1292, 2123, 2820, 3060 |
| HphI | GGTGA | 7 cut(s) | 559, 593, 714, 1007, 1691, 2789, 3134 |
| Hpy166II | GTNNAC | 7 cut(s) | 567, 926, 1359, 1895, 2665, 2938, 3345 |
| Hpy8I | GTNNAC | 7 cut(s) | 567, 926, 1359, 1895, 2665, 2938, 3345 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 1206 |
| HpyCH4III | ACNGT | 3 cut(s) | 1003, 2399, 2800 |
| HpyCH4IV | ACGT | 3 cut(s) | 2740, 2809, 3445 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 700, 1423, 2366, 3099, 3329 |
| HpyF3I | CTNAG | 7 cut(s) | 588, 1245, 2033, 2312, 2594, 3159, 3355 |
| HpySE526I | ACGT | 3 cut(s) | 2740, 2809, 3445 |
| HspAI | GCGC | 2 cut(s) | 295, 1508 |
| Kpn2I | TCCGGA | 1 cut(s) | 3059 |
| Ksp22I | TGATCA | 2 cut(s) | 598, 2401 |
| LmnI | GCTCC | 2 cut(s) | 902, 1271 |
| MabI | ACCWGGT | 1 cut(s) | 1597 |
| MaeII | ACGT | 3 cut(s) | 2740, 2809, 3445 |
| MaeIII | GTNAC | 5 cut(s) | 581, 2597, 2741, 3095, 3397 |
| MfeI | CAATTG | 1 cut(s) | 798 |
| MflI | RGATCY | 5 cut(s) | 1186, 2233, 2323, 2923, 2995 |
| MhlI | GDGCHC | 3 cut(s) | 594, 1276, 2667 |
| MlsI | TGGCCA | 2 cut(s) | 1389, 2706 |
| MluNI | TGGCCA | 2 cut(s) | 1389, 2706 |
| MlyI | GAGTC | 5 cut(s) | 552, 578, 887, 3125, 3340 |
| MmeI | TCCRAC | 3 cut(s) | 72, 1508, 2877 |
| Mox20I | TGGCCA | 2 cut(s) | 1389, 2706 |
| MroI | TCCGGA | 1 cut(s) | 3059 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3239 |
| MscI | TGGCCA | 2 cut(s) | 1389, 2706 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1522 |
| Msp20I | TGGCCA | 2 cut(s) | 1389, 2706 |
| MspA1I | CMGCKG | 2 cut(s) | 1641, 2108 |
| MspCI | CTTAAG | 3 cut(s) | 1658, 2954, 3227 |
| MspI | CCGG | 6 cut(s) | 547, 764, 1292, 2123, 2820, 3060 |
| MspR9I | CCNGG | 9 cut(s) | 1293, 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| MunI | CAATTG | 1 cut(s) | 798 |
| Mva1269I | GAATGC | 5 cut(s) | 634, 905, 1246, 1973, 2740 |
| MvaI | CCWGG | 8 cut(s) | 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| MvnI | CGCG | 1 cut(s) | 1510 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 700, 1423, 2366, 3099, 3329 |
| NciI | CCSGG | 1 cut(s) | 1293 |
| NcoI | CCATGG | 2 cut(s) | 1711, 2866 |
| NdeI | CATATG | 4 cut(s) | 1867, 2406, 2425, 2627 |
| NlaIV | GGNNCC | 7 cut(s) | 2082, 2127, 2266, 2857, 2873, 2925, 3151 |
| NmeAIII | GCCGAG | 2 cut(s) | 214, 1906 |
| NmuCI | GTSAC | 4 cut(s) | 581, 2597, 3095, 3397 |
| NsbI | TGCGCA | 1 cut(s) | 296 |
| NspI | RCATGY | 2 cut(s) | 3271, 3412 |
| PaeI | GCATGC | 1 cut(s) | 3271 |
| PaeR7I | CTCGAG | 1 cut(s) | 10 |
| PagI | TCATGA | 2 cut(s) | 1141, 1617 |
| PasI | CCCWGGG | 1 cut(s) | 1503 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 210, 1591 |
| PctI | GAATGC | 5 cut(s) | 634, 905, 1246, 1973, 2740 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3239 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2611 |
| PinAI | ACCGGT | 1 cut(s) | 2819 |
| PleI | GAGTC | 5 cut(s) | 551, 578, 886, 3124, 3340 |
| PpsI | GAGTC | 5 cut(s) | 551, 578, 886, 3124, 3340 |
| Ppu21I | YACGTR | 1 cut(s) | 2810 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3363 |
| PsiI | TTATAA | 1 cut(s) | 1011 |
| Psp6I | CCWGG | 8 cut(s) | 1502, 1597, 1960, 2644, 2706, 2762, 2874, 3338 |
| PspFI | CCCAGC | 1 cut(s) | 2879 |
| PspGI | CCWGG | 8 cut(s) | 1502, 1597, 1960, 2644, 2706, 2762, 2874, 3338 |
| PspN4I | GGNNCC | 7 cut(s) | 2082, 2127, 2266, 2857, 2873, 2925, 3151 |
| PspPI | GGNCC | 3 cut(s) | 229, 307, 2872 |
| PstI | CTGCAG | 2 cut(s) | 528, 2079 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1604 |
| PsuI | RGATCY | 5 cut(s) | 1186, 2233, 2323, 2923, 2995 |
| PvuII | CAGCTG | 2 cut(s) | 1641, 2108 |
| RsaI | GTAC | 5 cut(s) | 212, 925, 1063, 1335, 3029 |
| RsaNI | GTAC | 5 cut(s) | 211, 924, 1062, 1334, 3028 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1522 |
| Sau96I | GGNCC | 3 cut(s) | 229, 307, 2872 |
| SchI | GAGTC | 5 cut(s) | 552, 578, 887, 3125, 3340 |
| ScrFI | CCNGG | 9 cut(s) | 1293, 1504, 1599, 1962, 2646, 2708, 2764, 2876, 3340 |
| SduI | GDGCHC | 3 cut(s) | 594, 1276, 2667 |
| SexAI | ACCWGGT | 1 cut(s) | 1597 |
| SfcI | CTRYAG | 6 cut(s) | 442, 524, 910, 2075, 2658, 3324 |
| Sfr274I | CTCGAG | 1 cut(s) | 10 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2819 |
| SinI | GGWCC | 2 cut(s) | 307, 2872 |
| SlaI | CTCGAG | 1 cut(s) | 10 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1522 |
| SmlI | CTYRAG | 6 cut(s) | 10, 35, 1658, 2340, 2954, 3227 |
| SmoI | CTYRAG | 6 cut(s) | 10, 35, 1658, 2340, 2954, 3227 |
| SphI | GCATGC | 1 cut(s) | 3271 |
| SsiI | CCGC | 7 cut(s) | 79, 147, 177, 466, 688, 751, 2009 |
| SspI | AATATT | 1 cut(s) | 2213 |
| StyD4I | CCNGG | 9 cut(s) | 1291, 1502, 1597, 1960, 2644, 2706, 2762, 2874, 3338 |
| StyI | CCWWGG | 3 cut(s) | 1711, 2610, 2866 |
| TaaI | ACNGT | 3 cut(s) | 1003, 2399, 2800 |
| TaiI | ACGT | 3 cut(s) | 2743, 2812, 3448 |
| TatI | WGTACW | 2 cut(s) | 923, 1333 |
| TauI | GCSGC | 2 cut(s) | 180, 469 |
| TscAI | CASTG | 5 cut(s) | 27, 1072, 2404, 3339, 3406 |
| TseFI | GTSAC | 4 cut(s) | 581, 2597, 3095, 3397 |
| Tsp45I | GTSAC | 4 cut(s) | 581, 2597, 3095, 3397 |
| TspGWI | ACGGA | 1 cut(s) | 3162 |
| TspRI | CASTG | 5 cut(s) | 27, 1072, 2404, 3339, 3406 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2611 |
| Vha464I | CTTAAG | 3 cut(s) | 1658, 2954, 3227 |
| VneI | GTGCAC | 1 cut(s) | 2663 |
| VpaK11BI | GGWCC | 2 cut(s) | 307, 2872 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2088 |
| XapI | RAATTY | 4 cut(s) | 2096, 2191, 2482, 3239 |
| XbaI | TCTAGA | 2 cut(s) | 643, 2375 |
| XceI | RCATGY | 2 cut(s) | 3271, 3412 |
| XhoI | CTCGAG | 1 cut(s) | 10 |
| XmiI | GTMKAC | 1 cut(s) | 1894 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3239 |