Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005499

Physical Location & Seq

Genomic Coordinates Reverse (-)

53460574 .. 53475397

Gene Structure 14824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATCGATGGGGTCGTCGAAGACGTAGGGGCACTTCGAGAGACGGATGAGAGATACTATCCGGCACGGATGTTGGAATCTGCTTCCACGCCGTCGGGATCTAAGATTGGTTTTGATGAGTGCCACTCGAATGCGGAGCTATTTTCAAATTTTTTGGAGGAGCACCAACAATTCACATTCCGGAGAGTGCATGGTCGATATATTCTTGGTAACAGCCAAATAAAGCTGATGGGCAGTTGGATGCGGCCTCAAGAAGATTCGCACGAGTTACAAACCGAGACGAAACCACTCTCGCTGCACAAGGAGATAGGCATGCGGATTGAGTTGAAGTGGATGCAAACCGAGTACGGCCTACATGAGTTGGAAGACGGGGTGTATGGGAAACCCGATAAATCTCAAGTGCCGAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.92

Weight (kDa)

5.51

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04895
fragaria_vesca	FvH4_5g28161 FvH4_5g28161 FvH4_5g28161 FvH4_5g28161 FvH4_5g28161
malus_domestica	MD04G1078800.v1.1
prunus_persica	Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1 Prupe.2G065300_v2.0.a1
pyrus_communis	pycom04g07060
rosa_chinensis	RchiOBHm_Chr4g0406081
rosa_laevigata	RLG00000008798 RLG00000034681
rosa_multiflora	Rmu_sc0000306.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121020 Rroxscaffold_5G00350810
rosa_rugosa	Rorug04G0065500 Rorug04G0065600
rosa_samantha	Rh4AG135700 Rh4BG132800 Rh4CG143700 Rh4DG130800 Rh5CG366800
rosa_wichuraiana	Rw4G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	3 cut(s)	134, 244, 316
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	147, 328
AluBI	AGCT	2 cut(s)	139, 226
AluI	AGCT	2 cut(s)	139, 226
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	35, 272
AlwI	GGATC	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	2 cut(s)	245, 349
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	27, 372
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	2, 223
BceAI	ACGGC	2 cut(s)	76, 364
BcoDI	GTCTC	2 cut(s)	35, 272
BisI	GCNGC	2 cut(s)	245, 296
BlsI	GCNGC	2 cut(s)	246, 297
BmsI	GCATC	2 cut(s)	231, 324
BpiI	GAAGAC	2 cut(s)	27, 372
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpuEI	CTTGAG	2 cut(s)	234, 381
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	4 cut(s)	52, 75, 246, 339
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	247, 351
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	62, 181
BsmAI	GTCTC	2 cut(s)	35, 272
BsmBI	CGTCTC	2 cut(s)	35, 272
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	247, 351
Bsp1286I	GDGCHC	2 cut(s)	34, 165
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	3, 98
BspACI	CCGC	3 cut(s)	134, 244, 316
BspANI	GGCC	2 cut(s)	247, 351
BspDI	ATCGAT	1 cut(s)	6
BspEI	TCCGGA	1 cut(s)	180
BspPI	GGATC	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	2 cut(s)	3, 98
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	4 cut(s)	52, 75, 246, 339
BstKTI	GATC	2 cut(s)	6, 101
BstMAI	GTCTC	2 cut(s)	35, 272
BstMBI	GATC	2 cut(s)	3, 98
BstNSI	RCATGY	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	2 cut(s)	27, 372
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	247, 351
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	4 cut(s)	52, 75, 246, 339
Cac8I	GCNNGC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	191, 313, 356
CviJI	RGCY	5 cut(s)	139, 216, 226, 247, 351
CviKI_1	RGCY	5 cut(s)	139, 216, 226, 247, 351
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	5, 100
DpnII	GATC	2 cut(s)	3, 98
Esp3I	CGTCTC	2 cut(s)	35, 272
FaeI	CATG	3 cut(s)	194, 316, 359
FaiI	YATR	5 cut(s)	192, 201, 314, 357, 378
FatI	CATG	3 cut(s)	190, 312, 355
Fnu4HI	GCNGC	2 cut(s)	245, 296
FokI	GGATG	4 cut(s)	59, 82, 253, 346
Fsp4HI	GCNGC	2 cut(s)	245, 296
GluI	GCNGC	2 cut(s)	245, 296
HaeIII	GGCC	2 cut(s)	247, 351
HapII	CCGG	2 cut(s)	62, 181
Hin1II	CATG	3 cut(s)	194, 316, 359
HinfI	GANTC	2 cut(s)	77, 257
HpaII	CCGG	2 cut(s)	62, 181
Hpy188III	TCNNGA	4 cut(s)	38, 96, 181, 251
Hpy99I	CGWCG	2 cut(s)	20, 97
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	190, 298, 337
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	194, 316, 359
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	3, 98
LmnI	GCTCC	2 cut(s)	136, 160
LpnPI	CCDG	2 cut(s)	75, 194
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	2 cut(s)	231, 324
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	209, 267
MalI	GATC	2 cut(s)	5, 100
MboI	GATC	2 cut(s)	3, 98
MboII	GAAGA	3 cut(s)	32, 266, 377
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	34, 165
MluCI	AATT	2 cut(s)	148, 170
MmeI	TCCRAC	3 cut(s)	54, 218, 342
MnlI	CCTC	3 cut(s)	151, 258, 399
MroI	TCCGGA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	62, 181
Mva1269I	GAATGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	3, 98
NlaIII	CATG	3 cut(s)	194, 316, 359
NspI	RCATGY	1 cut(s)	316
PaeI	GCATGC	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 21
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	77, 257
PkrI	GCNGC	2 cut(s)	246, 297
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	129
SatI	GCNGC	2 cut(s)	245, 296
Sau3AI	GATC	2 cut(s)	3, 98
SduI	GDGCHC	2 cut(s)	34, 165
SetI	ASST	3 cut(s)	27, 141, 228
SfaNI	GCATC	2 cut(s)	231, 324
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	249, 396
SmoI	CTYRAG	2 cut(s)	249, 396
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	2 cut(s)	148, 170
SsiI	CCGC	3 cut(s)	134, 244, 316
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	5 cut(s)	6, 18, 37, 128, 196
TasI	AATT	2 cut(s)	148, 170
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	77, 257
TseI	GCWGC	1 cut(s)	295
TspGWI	ACGGA	2 cut(s)	59, 82
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.