Rorug04G0065600

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005499
Physical Location & Seq
Reverse (-)
10103799 .. 10106714
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0065600.1

Sequence Viewer

Length: 882 bp
ATGGCTGTTGGGATGAAGAGTCGATCTGTTTTTAGGTCCAACGCTCCACCCATCAATTCATCAAGAAGCGGAGAGTTCAGTGAAAGAGCTCGGTTTCAATCCCAGTGGCTGTTCTTGACCTTGATAATGAAGAAGAAAAGAAAACAGGAGAAGATGAGAAGAAGGGTGAAAGGTCTGGTGCTTCGTGCTCAAGCTCGGATCTTCCTTGCATGGATAAGCTCAGGGATCAGATTTCTTGAGAGGGATCTGGTGGCGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGAGGTGGGCGGTGGAGGAGGAGAAGAAGAAGAAGGAGGCGGAGGTCAAGGCCAAGGAGGAGGCCAAGGTGGTGGAGGAGAAGAAGGACAAGGAGGAGGAGAAGAGTGGAAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAATACTCATGGACCCAGATGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCCAAGAAGAACCGTCTGAAGTTTGGACTGAAGGGTCGGTCTCTTATAATTGATGTTTGTCAACGTCTTCATTCATTTTTTCTGTACTATGCAGCAAAAGATATTCTATCAAGTGTAGGGAAGAAAACGGTGGAGTCCATGGTGCCATTAGCAGAGAAAACTAAAGACATGGCCGTATTTGCAGGTAAGACCACTCTGCATTATGTTGGTCATGTTGCGGTGGATTTGAAAGACAAGGCCGCTGTGGCAGGTTGGACTGTAGCGCACGACGGAACTGAGGCACCAGTGGAGGGAACCAAAGCAGCTGCAAGATTAGTTGCTGGAGCAGCAGGGTATGCTGGTCATGAGGCTGTGGATATTGTGTCCATGCCTTTTGAGTGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

293

Amino Acids

33.01

Weight (kDa)

9.91

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AasI GACNNNNNNGTC 1 cut(s) 528
Acc36I ACCTGC 2 cut(s) 668, 734
AccB1I GGYRCC 2 cut(s) 637, 775
AciI CCGC 6 cut(s) 69, 266, 299, 329, 713, 735
AclWI GGATC 3 cut(s) 206, 233, 252
AcoI YGGCCR 1 cut(s) 666
AcuI CTGAAG 2 cut(s) 533, 545
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 2 cut(s) 416, 785
AgsI TTSAA 3 cut(s) 98, 262, 724
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 4 cut(s) 89, 194, 219, 800
AluI AGCT 4 cut(s) 89, 194, 219, 800
Alw21I GWGCWC 2 cut(s) 91, 190
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 3 cut(s) 206, 233, 252
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 5 cut(s) 339, 351, 495, 666, 732
ApeKI GCWGC 5 cut(s) 587, 797, 800, 821, 876
AspLEI GCGC 1 cut(s) 760
AspS9I GGNCC 2 cut(s) 36, 450
AsuHPI GGTGA 2 cut(s) 178, 280
AvaII GGWCC 2 cut(s) 36, 450
BanI GGYRCC 2 cut(s) 637, 775
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 2 cut(s) 91, 190
BbvI GCAGC 5 cut(s) 599, 787, 809, 833, 863
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 653
BcoDI GTCTC 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 753
BfuAI ACCTGC 2 cut(s) 668, 734
BglI GCCNNNNNGGC 1 cut(s) 740
BisI GCNGC 6 cut(s) 588, 735, 798, 801, 822, 877
BlsI GCNGC 6 cut(s) 589, 736, 799, 802, 823, 878
Bme18I GGWCC 2 cut(s) 36, 450
BmgT120I GGNCC 2 cut(s) 36, 450
BmiI GGNNCC 4 cut(s) 452, 639, 777, 790
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 554
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 220
BpuEI CTTGAG 2 cut(s) 174, 257
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 342, 354, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 785
Bse1I ACTGG 2 cut(s) 103, 779
BseDI CCNNGG 3 cut(s) 342, 354, 633
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 416, 785
BseMII CTCAG 2 cut(s) 234, 762
BseNI ACTGG 2 cut(s) 103, 779
BseRI GAGGAG 6 cut(s) 320, 323, 362, 380, 398, 401
BseXI GCAGC 5 cut(s) 599, 787, 809, 833, 863
BshFI GGCC 5 cut(s) 341, 353, 497, 668, 734
BshNI GGYRCC 2 cut(s) 637, 775
BsiHKAI GWGCWC 2 cut(s) 91, 190
BslI CCNNNNNNNGG 2 cut(s) 416, 785
BsmAI GTCTC 1 cut(s) 540
BsnI GGCC 5 cut(s) 341, 353, 497, 668, 734
Bso31I GGTCTC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 91, 190
Bsp143I GATC 4 cut(s) 23, 198, 225, 244
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 6 cut(s) 69, 266, 299, 329, 713, 735
BspANI GGCC 5 cut(s) 341, 353, 497, 668, 734
BspCNI CTCAG 2 cut(s) 233, 763
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 4 cut(s) 452, 639, 777, 790
BspMI ACCTGC 2 cut(s) 668, 734
BspPI GGATC 3 cut(s) 206, 233, 252
BspT107I GGYRCC 2 cut(s) 637, 775
BspTNI GGTCTC 1 cut(s) 540
BsrI ACTGG 2 cut(s) 103, 779
BssECI CCNNGG 3 cut(s) 342, 354, 633
BssMI GATC 4 cut(s) 23, 198, 225, 244
BssT1I CCWWGG 3 cut(s) 342, 354, 633
Bst4CI ACNGT 3 cut(s) 509, 625, 754
Bst6I CTCTTC 3 cut(s) 11, 284, 386
BstAPI GCANNNNNTGC 1 cut(s) 830
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 220, 771
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 4 cut(s) 26, 201, 228, 247
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 4 cut(s) 23, 198, 225, 244
BstMWI GCNNNNNNNGC 4 cut(s) 674, 740, 821, 830
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 5 cut(s) 599, 787, 809, 833, 863
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 2 cut(s) 198, 244
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 2 cut(s) 198, 244
BsuRI GGCC 5 cut(s) 341, 353, 497, 668, 734
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 85, 110, 786
BveI ACCTGC 2 cut(s) 668, 734
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 109
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 36, 450
Csp6I GTAC 1 cut(s) 580
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 7 cut(s) 210, 447, 634, 664, 707, 839, 862
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 220, 771
DpnI GATC 4 cut(s) 25, 200, 227, 246
DpnII GATC 4 cut(s) 23, 198, 225, 244
DrdI GACNNNNNNGTC 1 cut(s) 528
DseDI GACNNNNNNGTC 1 cut(s) 528
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 3 cut(s) 11, 284, 386
EarI CTCTTC 3 cut(s) 11, 284, 386
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 3 cut(s) 342, 354, 633
Eco24I GRGCYC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 540
Eco47I GGWCC 2 cut(s) 36, 450
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 533, 545
EcoICRI GAGCTC 1 cut(s) 89
EcoT14I CCWWGG 3 cut(s) 342, 354, 633
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 3 cut(s) 342, 354, 633
FaeI CATG 7 cut(s) 213, 450, 637, 667, 710, 842, 865
FatI CATG 7 cut(s) 209, 446, 633, 663, 706, 838, 861
Fnu4HI GCNGC 6 cut(s) 588, 735, 798, 801, 822, 877
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 6 cut(s) 588, 735, 798, 801, 822, 877
GlaI GCGC 1 cut(s) 759
GluI GCNGC 6 cut(s) 588, 735, 798, 801, 822, 877
GsuI CTGGAG 1 cut(s) 837
HaeIII GGCC 5 cut(s) 341, 353, 497, 668, 734
HhaI GCGC 1 cut(s) 760
Hin1II CATG 7 cut(s) 213, 450, 637, 667, 710, 842, 865
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HincII GTYRAC 1 cut(s) 557
HindII GTYRAC 1 cut(s) 557
HinfI GANTC 2 cut(s) 19, 629
HphI GGTGA 2 cut(s) 178, 280
Hpy166II GTNNAC 1 cut(s) 557
Hpy188I TCNGA 3 cut(s) 198, 230, 513
Hpy188III TCNNGA 4 cut(s) 63, 115, 236, 839
Hpy8I GTNNAC 1 cut(s) 557
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 5 cut(s) 156, 271, 316, 367, 520
HpyCH4III ACNGT 3 cut(s) 509, 625, 754
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 5 cut(s) 209, 587, 677, 694, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 674, 740, 821, 830
HpyF3I CTNAG 2 cut(s) 220, 771
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 7 cut(s) 213, 450, 637, 667, 710, 842, 865
HspAI GCGC 1 cut(s) 758
Kzo9I GATC 4 cut(s) 23, 198, 225, 244
LmnI GCTCC 2 cut(s) 49, 818
Lsp1109I GCAGC 5 cut(s) 599, 787, 809, 833, 863
LweI GCATC 1 cut(s) 447
MaeII ACGT 1 cut(s) 559
MalI GATC 4 cut(s) 25, 200, 227, 246
MboI GATC 4 cut(s) 23, 198, 225, 244
MflI RGATCY 2 cut(s) 198, 244
MhlI GDGCHC 2 cut(s) 91, 190
MluCI AATT 2 cut(s) 55, 543
MlyI GAGTC 2 cut(s) 28, 638
MmeI TCCRAC 2 cut(s) 63, 728
MspA1I CMGCKG 2 cut(s) 737, 800
MwoI GCNNNNNNNGC 4 cut(s) 674, 740, 821, 830
NcoI CCATGG 1 cut(s) 633
NdeII GATC 4 cut(s) 23, 198, 225, 244
NlaIII CATG 7 cut(s) 213, 450, 637, 667, 710, 842, 865
NlaIV GGNNCC 4 cut(s) 452, 639, 777, 790
PagI TCATGA 1 cut(s) 838
PkrI GCNGC 6 cut(s) 589, 736, 799, 802, 823, 878
PleI GAGTC 2 cut(s) 27, 637
PpsI GAGTC 2 cut(s) 27, 637
PsiI TTATAA 1 cut(s) 542
Psp124BI GAGCTC 1 cut(s) 91
PspN4I GGNNCC 4 cut(s) 452, 639, 777, 790
PspPI GGNCC 2 cut(s) 36, 450
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 198, 244
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SacI GAGCTC 1 cut(s) 91
SatI GCNGC 6 cut(s) 588, 735, 798, 801, 822, 877
Sau3AI GATC 4 cut(s) 23, 198, 225, 244
Sau96I GGNCC 2 cut(s) 36, 450
SchI GAGTC 2 cut(s) 28, 638
SduI GDGCHC 2 cut(s) 91, 190
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 753
SinI GGWCC 2 cut(s) 36, 450
SmlI CTYRAG 2 cut(s) 189, 236
SmoI CTYRAG 2 cut(s) 189, 236
Sse9I AATT 2 cut(s) 55, 543
SsiI CCGC 6 cut(s) 69, 266, 299, 329, 713, 735
SstI GAGCTC 1 cut(s) 91
StyI CCWWGG 3 cut(s) 342, 354, 633
TaaI ACNGT 3 cut(s) 509, 625, 754
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 22
TaqII GACCGA 1 cut(s) 522
TasI AATT 2 cut(s) 55, 543
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 737
TscAI CASTG 3 cut(s) 85, 110, 786
TseI GCWGC 5 cut(s) 587, 797, 800, 821, 876
TspDTI ATGAA 5 cut(s) 29, 48, 143, 554, 558
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 3 cut(s) 85, 110, 786
VpaK11BI GGWCC 2 cut(s) 36, 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.