Rorug04G0065500

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005499
Physical Location & Seq
Reverse (-)
10103261 .. 10103722
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0065500.1

Sequence Viewer

Length: 234 bp
ATGAGGCCAAGAAAGCAGCTGAAGCAAATAGGCCCAAGGGTTCTGAGACTACTTATCAAGGAGGATAATCCAAATGCTGGGAGCAAGAGGAGACATGGACGAAACCAGTTCAGAGGGAATCTCAGCATATGCAGAGTGGCAGACCAACTGAAAAAACCAACCAGAAACCGCACAGTTAGAGAGGGAGCGCAAGAGGGCGGTACCTGGGTGCCGGGAACAATCGGCAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

77

Amino Acids

8.77

Weight (kDa)

11.94

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 200, 208
AccB7I CCANNNNNTGG 1 cut(s) 77
AciI CCGC 2 cut(s) 169, 198
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 77
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 40, 85
AoxI GGCC 2 cut(s) 5, 31
ApeKI GCWGC 1 cut(s) 16
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 2 cut(s) 200, 208
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 205
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 40, 85
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 205, 213
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 202, 210
BmrFI CCNGG 2 cut(s) 205, 213
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuMI CCSGG 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 35, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 35, 204
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 35, 136
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 7, 33
BshNI GGYRCC 2 cut(s) 200, 208
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 40, 85
BsnI GGCC 2 cut(s) 7, 33
BspACI CCGC 2 cut(s) 169, 198
BspANI GGCC 2 cut(s) 7, 33
BspCNI CTCAG 2 cut(s) 36, 135
BspLI GGNNCC 2 cut(s) 202, 210
BspT107I GGYRCC 2 cut(s) 200, 208
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 35, 204
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 44, 122
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 40, 85
BstMWI GCNNNNNNNGC 2 cut(s) 13, 22
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 203, 211
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 7, 33
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 95
CviJI RGCY 3 cut(s) 7, 19, 33
CviKI_1 RGCY 3 cut(s) 7, 19, 33
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 44, 122
Eco130I CCWWGG 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 96, 128, 130
FatI CATG 1 cut(s) 94
FauNDI CATATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 7, 33
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 45, 113
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 22
HpyF3I CTNAG 2 cut(s) 44, 122
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 188
KpnI GGTACC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 81, 185
LpnPI CCDG 7 cut(s) 63, 119, 175, 190, 211, 217, 225
Lsp1109I GCAGC 1 cut(s) 28
MnlI CCTC 5 cut(s) 55, 81, 107, 175, 187
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 205, 213
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 13, 22
NciI CCSGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 128
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 202, 210
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 202, 210
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 205, 213
SetI ASST 2 cut(s) 21, 206
SsiI CCGC 2 cut(s) 169, 198
StyD4I CCNGG 2 cut(s) 203, 211
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 175
TfiI GAWTC 1 cut(s) 118
TseI GCWGC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.