Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008998

Physical Location & Seq

Genomic Coordinates Forward (+)

15816020 .. 15819814

Gene Structure 3795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G144800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAGCAGCAGCCATGAGCAGCACCAGCATTCTCAATCAATTTTCAGACCCTTCCGTACACACGTCCAATTAAATCATGTCTTACATTTCCTATTTTTCGGTTTAGGTTTGTCACTCGGTATCGTAACTACCTTATATTTCCAGAGCTTCTCATTCACTACCTTCCAAGCCTCCCTAAATTCCATTAATTTTAGTTCTCCAGAACCATCATCATCTACAACTCAATCACCACCACCACCAACACTGCTGGCCCCGCCCCCGCCACCACCGCTACCGCCACCTCCACCACCACTACCGCCACCGCCATTTCTAGTGCTGTCGTTCACGAATGTGACCTCTAATTATACTAGTGTTTCATTGAAAGAACAAAAACTCCTAGTACACAATATGAGTGACGAGGAGTTGTTTTGGAGAGCTTCAATGGTTCCTCGAATTCAAAAGCTGCCTTACAAGTATGTTCCGAAAGTGGCTTTCATGTTCTTGACAAAGGGGCCTCTACCTCTGGGTCCCTTGTGGGAGAAATTTTTCGAGGGACATGAAGGCTTATACTCCATTTATGTGCATGCACACCCTGATTTTAATGAATCAGTGCCTGAAGATTCTGTCTTCCATGGTAGAAGAATTCATAGCCAGCCAGTCTATTGGGGAACATCAACAATGTTAGATGCCGAGAGACGCCTCCTAGCTAATGCACTCCTTGACTTCTCCAATCAAAGATTTGTGTTGCTGTCTGAATCGTGCATTCCGTTGTTCAACTTCACAACAACTTATGACTACCTCATCAACTCAAATCTAAGCTTTCTAAGCTCATTTGATGACCCAAGGAAGCCAGGCCGTGGCCGATATAACCCTAAAATGTATCCAATTATAAACATCACAAATTGGCGAAAAGGGTCTCAATGGTTTGAAGTGCACCGTGAGCTTGCCATCCACATTGTGTCTGATTGCAAATATTATCCTATCTTTCAAGAATACTGTCGCCCTTCTTGTTATATTGATGAGCATTATATTCCAACACTGGTGAATATATTGTACTCTGAGCTGAATTCAAAGAGGAGCATTACTTGGGTGGATTGGTCAAGGGGTGGTCCTCATCCTGGAAAATTTGAATGGAGTGATATCACAGATGAGTTTTTGAATCGGATTCGGTTTGGATCAGAATGTGAATACAATGGCAATACAACTTCAATATGTTTCTTGTTTGCTAGAAAATTTATGCCTAATACATTGGAGCCTTTGTTGAGAGTTGCTCCTTTGTTGCTTGGTTTTGATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

426

Amino Acids

48.98

Weight (kDa)

6.97

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16170
fragaria_vesca	FvH4_7g07190
malus_domestica	MD09G1254700.v1.1 MD17G1247300.v1.1
prunus_persica	Prupe.3G144800_v2.0.a1
pyrus_communis	pycom17g24870
rosa_chinensis	RchiOBHm_Chr3g0494101 RchiOBHm_Chr3g0495591
rosa_laevigata	RLG00000022608 RLG00000022679
rosa_multiflora	Rmu_sc0000559.1_g000025 Rmu_sc0010244.1_g000008
rosa_roxburghii	Rroxscaffold_6G00391280
rosa_rugosa	Rorug03G0263900 Rorug03G0274400
rosa_samantha	Rh3AG313900 Rh3AG322100 Rh3BG349700 Rh3BG357300 Rh3CG346500 Rh3DG349000
rosa_wichuraiana	Rw3G027450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	869
AccB7I	CCANNNNNTGG	1 cut(s)	836
AciI	CCGC	6 cut(s)	254, 260, 269, 275, 296, 302
AclWI	GGATC	2 cut(s)	1162, 1265
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	7 cut(s)	178, 432, 521, 621, 1045, 1103, 1211
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	676
AdeI	CACNNNGTG	1 cut(s)	937
AfaI	GTAC	3 cut(s)	58, 381, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	836, 1097
AflIII	ACRYGT	1 cut(s)	61
AhlI	ACTAGT	1 cut(s)	347
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	829, 1096
AleI	CACNNNNGTG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	8 cut(s)	147, 416, 442, 686, 798, 807, 922, 1042
AluI	AGCT	8 cut(s)	147, 416, 442, 686, 798, 807, 922, 1042
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	2 cut(s)	667, 900
Alw44I	GTGCAC	1 cut(s)	911
AlwI	GGATC	2 cut(s)	1162, 1265
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	4 cut(s)	249, 491, 832, 838
ApaLI	GTGCAC	1 cut(s)	911
ApeKI	GCWGC	4 cut(s)	6, 9, 19, 442
ApoI	RAATTY	7 cut(s)	178, 432, 521, 621, 1045, 1103, 1211
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	4 cut(s)	250, 491, 506, 1088
AsuHPI	GGTGA	2 cut(s)	219, 1033
AvaII	GGWCC	2 cut(s)	506, 1088
BaeGI	GKGCMC	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	915
BbvI	GCAGC	4 cut(s)	18, 21, 31, 429
BccI	CCATC	2 cut(s)	214, 935
BceAI	ACGGC	1 cut(s)	819
BciT130I	CCWGG	2 cut(s)	831, 1098
BciVI	GTATCC	1 cut(s)	870
BcoDI	GTCTC	2 cut(s)	667, 900
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	5 cut(s)	311, 348, 377, 683, 1206
BfuI	GTATCC	1 cut(s)	870
BisI	GCNGC	4 cut(s)	7, 10, 20, 443
BlsI	GCNGC	4 cut(s)	8, 11, 21, 444
Bme1390I	CCNGG	2 cut(s)	831, 1098
Bme18I	GGWCC	2 cut(s)	506, 1088
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	4 cut(s)	250, 491, 506, 1088
BmiI	GGNNCC	6 cut(s)	252, 426, 492, 507, 508, 1233
BmrFI	CCNGG	2 cut(s)	831, 1098
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	598
BplI	GAGNNNNNCTC	2 cut(s)	1234, 1266
BpmI	CTGGAG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	3 cut(s)	610, 821, 835
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 1223, 1253
Bsc4I	CCNNNNNNNGG	2 cut(s)	836, 1097
Bse1I	ACTGG	2 cut(s)	635, 1023
BseBI	CCWGG	2 cut(s)	831, 1098
BseDI	CCNNGG	3 cut(s)	610, 821, 835
BseGI	GGATG	2 cut(s)	927, 1093
BseLI	CCNNNNNNNGG	2 cut(s)	836, 1097
BseMII	CTCAG	1 cut(s)	1029
BseNI	ACTGG	2 cut(s)	635, 1023
BseRI	GAGGAG	2 cut(s)	413, 1069
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	4 cut(s)	18, 21, 31, 429
BshFI	GGCC	4 cut(s)	251, 493, 834, 840
BsiHKAI	GWGCWC	1 cut(s)	915
BslFI	GGGAC	2 cut(s)	492, 546
BslI	CCNNNNNNNGG	2 cut(s)	836, 1097
BsmAI	GTCTC	2 cut(s)	667, 900
BsmBI	CGTCTC	1 cut(s)	667
BsmFI	GGGAC	2 cut(s)	492, 546
BsmI	GAATGC	2 cut(s)	28, 741
BsnI	GGCC	4 cut(s)	251, 493, 834, 840
Bso31I	GGTCTC	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp143I	GATC	2 cut(s)	1154, 1270
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	6 cut(s)	254, 260, 269, 275, 296, 302
BspANI	GGCC	4 cut(s)	251, 493, 834, 840
BspCNI	CTCAG	1 cut(s)	1030
BspLI	GGNNCC	6 cut(s)	252, 426, 492, 507, 508, 1233
BspPI	GGATC	2 cut(s)	1162, 1265
BspTNI	GGTCTC	1 cut(s)	900
BsrI	ACTGG	2 cut(s)	635, 1023
BssECI	CCNNGG	3 cut(s)	610, 821, 835
BssMI	GATC	2 cut(s)	1154, 1270
BssNI	GRCGYC	1 cut(s)	676
BssT1I	CCWWGG	2 cut(s)	610, 821
Bst2UI	CCWGG	2 cut(s)	831, 1098
Bst4CI	ACNGT	2 cut(s)	917, 977
BstACI	GRCGYC	1 cut(s)	676
BstC8I	GCNNGC	4 cut(s)	249, 564, 632, 924
BstDEI	CTNAG	3 cut(s)	794, 803, 1038
BstDSI	CCRYGG	2 cut(s)	610, 835
BstF5I	GGATG	2 cut(s)	927, 1093
BstKTI	GATC	2 cut(s)	1157, 1273
BstMAI	GTCTC	2 cut(s)	667, 900
BstMBI	GATC	2 cut(s)	1154, 1270
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 253, 268, 804, 919
BstNI	CCWGG	2 cut(s)	831, 1098
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	829, 1096
BstSLI	GKGCMC	1 cut(s)	915
BstV1I	GCAGC	4 cut(s)	18, 21, 31, 429
BstV2I	GAAGAC	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	870
BsuRI	GGCC	4 cut(s)	251, 493, 834, 840
BtgI	CCRYGG	2 cut(s)	610, 835
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	927, 1093
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	3 cut(s)	242, 594, 1016
Cac8I	GCNNGC	4 cut(s)	249, 564, 632, 924
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	4 cut(s)	250, 491, 506, 1088
CseI	GACGC	1 cut(s)	684
Csp6I	GTAC	3 cut(s)	57, 380, 1033
CviAII	CATG	6 cut(s)	14, 77, 475, 536, 563, 611
CviQI	GTAC	3 cut(s)	57, 380, 1033
DdeI	CTNAG	3 cut(s)	794, 803, 1038
DpnI	GATC	2 cut(s)	1156, 1272
DpnII	GATC	2 cut(s)	1154, 1270
DraIII	CACNNNGTG	1 cut(s)	937
EaeI	YGGCCR	1 cut(s)	838
Eco130I	CCWWGG	2 cut(s)	610, 821
Eco31I	GGTCTC	1 cut(s)	900
Eco32I	GATATC	1 cut(s)	1120
Eco47I	GGWCC	2 cut(s)	506, 1088
Eco57I	CTGAAG	1 cut(s)	615
EcoO109I	RGGNCCY	2 cut(s)	491, 506
EcoRI	GAATTC	3 cut(s)	432, 621, 1045
EcoRII	CCWGG	2 cut(s)	829, 1096
EcoRV	GATATC	1 cut(s)	1120
EcoT14I	CCWWGG	2 cut(s)	610, 821
ErhI	CCWWGG	2 cut(s)	610, 821
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	6 cut(s)	17, 80, 478, 539, 566, 614
FaqI	GGGAC	2 cut(s)	492, 546
FatI	CATG	6 cut(s)	13, 76, 474, 535, 562, 610
FauI	CCCGC	2 cut(s)	261, 267
Fnu4HI	GCNGC	4 cut(s)	7, 10, 20, 443
FokI	GGATG	2 cut(s)	914, 1080
Fsp4HI	GCNGC	4 cut(s)	7, 10, 20, 443
FspBI	CTAG	5 cut(s)	311, 348, 377, 683, 1206
GluI	GCNGC	4 cut(s)	7, 10, 20, 443
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	4 cut(s)	251, 493, 834, 840
HgaI	GACGC	1 cut(s)	684
Hin1I	GRCGYC	1 cut(s)	676
Hin1II	CATG	6 cut(s)	17, 80, 478, 539, 566, 614
HindIII	AAGCTT	1 cut(s)	796
HinfI	GANTC	5 cut(s)	584, 599, 734, 1138, 1144
HphI	GGTGA	2 cut(s)	219, 1033
Hpy166II	GTNNAC	4 cut(s)	59, 324, 382, 913
Hpy188I	TCNGA	7 cut(s)	47, 462, 733, 943, 1039, 1143, 1159
Hpy188III	TCNNGA	5 cut(s)	142, 200, 325, 481, 968
Hpy8I	GTNNAC	4 cut(s)	59, 324, 382, 913
HpyAV	CCTTC	4 cut(s)	61, 172, 533, 993
HpyCH4III	ACNGT	2 cut(s)	917, 977
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	562, 566, 692, 741, 913, 948
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 253, 268, 804, 919
HpyF3I	CTNAG	3 cut(s)	794, 803, 1038
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	676
Hsp92II	CATG	6 cut(s)	17, 80, 478, 539, 566, 614
KflI	GGGWCCC	1 cut(s)	506
Kzo9I	GATC	2 cut(s)	1154, 1270
LmnI	GCTCC	3 cut(s)	1056, 1231, 1255
Lsp1109I	GCAGC	4 cut(s)	18, 21, 31, 429
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	5 cut(s)	311, 348, 377, 683, 1206
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	4 cut(s)	111, 124, 331, 392
MalI	GATC	2 cut(s)	1156, 1272
MboI	GATC	2 cut(s)	1154, 1270
MboII	GAAGA	3 cut(s)	598, 608, 630
MhlI	GDGCHC	1 cut(s)	915
MmeI	TCCRAC	1 cut(s)	1037
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	3 cut(s)	71, 186, 579
MslI	CAYNNNNRTG	2 cut(s)	329, 557
MspR9I	CCNGG	2 cut(s)	831, 1098
Mva1269I	GAATGC	2 cut(s)	28, 741
MvaI	CCWGG	2 cut(s)	831, 1098
MwoI	GCNNNNNNNGC	5 cut(s)	25, 253, 268, 804, 919
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	2 cut(s)	1154, 1270
NlaIII	CATG	6 cut(s)	17, 80, 478, 539, 566, 614
NlaIV	GGNNCC	6 cut(s)	252, 426, 492, 507, 508, 1233
NmeAIII	GCCGAG	1 cut(s)	694
NmuCI	GTSAC	3 cut(s)	111, 331, 392
NspI	RCATGY	1 cut(s)	566
OliI	CACNNNNGTG	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	743
PctI	GAATGC	2 cut(s)	28, 741
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	5 cut(s)	584, 599, 734, 1138, 1144
PflMI	CCANNNNNTGG	1 cut(s)	836
PfoI	TCCNGGA	1 cut(s)	1096
PkrI	GCNGC	4 cut(s)	8, 11, 21, 444
PpuMI	RGGWCCY	1 cut(s)	506
PshBI	ATTAAT	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	869
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	829, 1096
PspGI	CCWGG	2 cut(s)	829, 1096
PspN4I	GGNNCC	6 cut(s)	252, 426, 492, 507, 508, 1233
PspPI	GGNCC	4 cut(s)	250, 491, 506, 1088
PspPPI	RGGWCCY	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	593
RsaI	GTAC	3 cut(s)	58, 381, 1034
RsaNI	GTAC	3 cut(s)	57, 380, 1033
RseI	CAYNNNNRTG	2 cut(s)	329, 557
SaqAI	TTAA	3 cut(s)	71, 186, 579
SatI	GCNGC	4 cut(s)	7, 10, 20, 443
Sau3AI	GATC	2 cut(s)	1154, 1270
Sau96I	GGNCC	4 cut(s)	250, 491, 506, 1088
ScrFI	CCNGG	2 cut(s)	831, 1098
SduI	GDGCHC	1 cut(s)	915
SfaNI	GCATC	1 cut(s)	655
SinI	GGWCC	2 cut(s)	506, 1088
SmiMI	CAYNNNNRTG	2 cut(s)	329, 557
SpeI	ACTAGT	1 cut(s)	347
SphI	GCATGC	1 cut(s)	566
SsiI	CCGC	6 cut(s)	254, 260, 269, 275, 296, 302
SspI	AATATT	1 cut(s)	953
SspMI	CTAG	5 cut(s)	311, 348, 377, 683, 1206
StyD4I	CCNGG	2 cut(s)	829, 1096
StyI	CCWWGG	2 cut(s)	610, 821
TaaI	ACNGT	2 cut(s)	917, 977
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	430, 528
TatI	WGTACW	2 cut(s)	379, 1032
TfiI	GAWTC	5 cut(s)	584, 599, 734, 1138, 1144
Tru1I	TTAA	3 cut(s)	71, 186, 579
Tru9I	TTAA	3 cut(s)	71, 186, 579
TscAI	CASTG	3 cut(s)	249, 594, 1023
TseFI	GTSAC	3 cut(s)	111, 331, 392
TseI	GCWGC	4 cut(s)	6, 9, 19, 442
Tsp45I	GTSAC	3 cut(s)	111, 331, 392
TspDTI	ATGAA	5 cut(s)	345, 463, 552, 597, 614
TspGWI	ACGGA	3 cut(s)	44, 735, 1263
TspRI	CASTG	3 cut(s)	249, 594, 1023
Van91I	CCANNNNNTGG	1 cut(s)	836
VneI	GTGCAC	1 cut(s)	911
VpaK11BI	GGWCC	2 cut(s)	506, 1088
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	7 cut(s)	178, 432, 521, 621, 1045, 1103, 1211
XceI	RCATGY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	5 cut(s)	311, 348, 377, 683, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.