Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010244.1

Orthogroup ID

OG0008998

Physical Location & Seq

Genomic Coordinates Forward (+)

17548 .. 18930

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010244.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

atgatggcggtgatattgtgcagcagcagcagtgctagtgagcaacatcatcaggcgtttcaattcaattacgtcctgcatttcctcttctttgttattggtttgtcactcggcatcctggctaccttatatttccagagttactcattagtcacttttcaagcatctctcaactccattaataattttattaacactccactaaaaccatcacccccatcacaacctctgcctccaccgaaattaccacctacagctccacctccaccgccaccgccgcttctggtactgtctttctcaacaatcaatgcaacatcatcatcagtattagttaattacagtaccagtctcagcactagtgtttctttgaaagaacaaaagctgttagtacacaacatgagcgacgaggagttactttggagagcatccatggcccctcaagttgattcgccttataactgtgttccgaaagtggctttcatgttcttgacaaaagggcctctacctttggctcccttatgggacaaatttttcgagggatacgagggtctatactctatctatgtgcatgcgcacccttcttttaatgaatcgcagcctcaaacttctgtcttccatggtcgaagaattaatagccaggccgtttactggggaacttcctcaatgttggatgcagagcgacggctattagcaaatgcattgcttgacttgtcaaatcaaagatttgtattgctttccgaatcgtgcattcccttgtttaacttcacgacaacttatgactaccttgtaaactcaaatcgaagctttctaagcgtattcgatgacccgaggaagcctggtagagggcgctacaaccctcaaatgtggccccaaataaacatcacagattggcggaaaggatctcaatggtttgaagtgcaccgagatctggccatgcacattgtctctgatcagaaatactaccccatctttcaacaatactgccaccctccttgttatatcgatgagcattatattccaacactcgtcaacatgttgtacgctgatctcaactctgagaggagcattacatgggtggattggtcgaggggtggtcctcatcctgggaaatttggatggccagatattacagatgagtttttgaatggaattcggttcggatcgcagtgcaaatacaacggcaatactacttcattatgtttcttatttggtaggaagtttttgcctaatgctctggagcctttgttacgagttgctccactgctgcttggctttgatccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

427

Amino Acids

48.5

Weight (kDa)

6.86

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16170
fragaria_vesca	FvH4_7g07190
malus_domestica	MD09G1254700.v1.1 MD17G1247300.v1.1
prunus_persica	Prupe.3G144800_v2.0.a1
pyrus_communis	pycom17g24870
rosa_chinensis	RchiOBHm_Chr3g0494101 RchiOBHm_Chr3g0495591
rosa_laevigata	RLG00000022608 RLG00000022679
rosa_multiflora	Rmu_sc0000559.1_g000025 Rmu_sc0010244.1_g000008
rosa_roxburghii	Rroxscaffold_6G00391280
rosa_rugosa	Rorug03G0263900 Rorug03G0274400
rosa_samantha	Rh3AG313900 Rh3AG322100 Rh3BG349700 Rh3BG357300 Rh3CG346500 Rh3DG349000
rosa_wichuraiana	Rw3G027450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
Acc16I	TGCGCA	1 cut(s)	573
AciI	CCGC	5 cut(s)	8, 269, 275, 278, 892
AclWI	GGATC	3 cut(s)	907, 1168, 1271
AcoI	YGGCCR	2 cut(s)	930, 1118
AcsI	RAATTY	3 cut(s)	527, 1109, 1149
AfaI	GTAC	4 cut(s)	288, 343, 390, 1040
AfiI	CCNNNNNNNGG	4 cut(s)	648, 842, 928, 1103
AflIII	ACRYGT	1 cut(s)	1032
AgsI	TTSAA	7 cut(s)	62, 67, 161, 370, 914, 974, 1144
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	4 cut(s)	117, 636, 835, 1102
AluBI	AGCT	3 cut(s)	257, 382, 804
AluI	AGCT	3 cut(s)	257, 382, 804
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	2 cut(s)	353, 949
Alw44I	GTGCAC	1 cut(s)	917
AlwI	GGATC	3 cut(s)	907, 1168, 1271
Ama87I	CYCGRG	1 cut(s)	826
AoxI	GGCC	6 cut(s)	432, 497, 639, 866, 930, 1118
ApaLI	GTGCAC	1 cut(s)	917
ApeKI	GCWGC	5 cut(s)	21, 24, 27, 595, 1264
ApoI	RAATTY	3 cut(s)	527, 1109, 1149
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AseI	ATTAAT	2 cut(s)	180, 630
AspLEI	GCGC	2 cut(s)	574, 849
AspS9I	GGNCC	4 cut(s)	433, 497, 867, 1094
AsuHPI	GGTGA	2 cut(s)	22, 204
AvaI	CYCGRG	1 cut(s)	826
AvaII	GGWCC	1 cut(s)	1094
BaeGI	GKGCMC	1 cut(s)	921
BaeI	ACNNNNGTAYC	2 cut(s)	532, 565
BalI	TGGCCA	2 cut(s)	932, 1120
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	5 cut(s)	33, 36, 39, 607, 1251
BccI	CCATC	4 cut(s)	217, 226, 974, 1110
BceAI	ACGGC	3 cut(s)	626, 698, 1195
BciT130I	CCWGG	4 cut(s)	119, 638, 837, 1104
BciVI	GTATCC	1 cut(s)	533
BclI	TGATCA	1 cut(s)	949
BcoDI	GTCTC	2 cut(s)	353, 949
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	3 cut(s)	36, 357, 1282
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	850
BfuI	GTATCC	1 cut(s)	533
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	6 cut(s)	22, 25, 28, 278, 596, 1265
BlsI	GCNGC	6 cut(s)	23, 26, 29, 279, 597, 1266
Bme1390I	CCNGG	4 cut(s)	119, 638, 837, 1104
Bme18I	GGWCC	1 cut(s)	1094
BmeT110I	CYCGRG	1 cut(s)	826
BmgT120I	GGNCC	4 cut(s)	433, 497, 867, 1094
BmiI	GGNNCC	4 cut(s)	435, 513, 869, 1239
BmrFI	CCNGG	4 cut(s)	119, 638, 837, 1104
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	4 cut(s)	123, 173, 434, 661
BmuI	ACTGGG	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	1256
BpuEI	CTTGAG	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	1002
BsaJI	CCNNGG	4 cut(s)	429, 616, 827, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	1229, 1259
Bsc4I	CCNNNNNNNGG	4 cut(s)	648, 842, 928, 1103
Bse1I	ACTGG	2 cut(s)	345, 653
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	4 cut(s)	119, 638, 837, 1104
BseCI	ATCGAT	1 cut(s)	1002
BseDI	CCNNGG	4 cut(s)	429, 616, 827, 1103
BseGI	GGATG	5 cut(s)	114, 425, 676, 1099, 1121
BseLI	CCNNNNNNNGG	4 cut(s)	648, 842, 928, 1103
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	2 cut(s)	364, 1047
BseNI	ACTGG	2 cut(s)	345, 653
BseRI	GAGGAG	2 cut(s)	422, 1075
BseSI	GKGCMC	1 cut(s)	921
BseXI	GCAGC	5 cut(s)	33, 36, 39, 607, 1251
BsgI	GTGCAG	1 cut(s)	40
BshFI	GGCC	6 cut(s)	434, 499, 641, 868, 932, 1120
BshVI	ATCGAT	1 cut(s)	1002
BsiHKAI	GWGCWC	1 cut(s)	921
BsiHKCI	CYCGRG	1 cut(s)	826
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	4 cut(s)	648, 842, 928, 1103
BsmAI	GTCTC	2 cut(s)	353, 949
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	6 cut(s)	434, 499, 641, 868, 932, 1120
BsoBI	CYCGRG	1 cut(s)	826
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp143I	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
Bsp19I	CCATGG	2 cut(s)	429, 616
BspACI	CCGC	5 cut(s)	8, 269, 275, 278, 892
BspANI	GGCC	6 cut(s)	434, 499, 641, 868, 932, 1120
BspCNI	CTCAG	2 cut(s)	363, 1048
BspDI	ATCGAT	1 cut(s)	1002
BspLI	GGNNCC	4 cut(s)	435, 513, 869, 1239
BspPI	GGATC	3 cut(s)	907, 1168, 1271
BsrDI	GCAATG	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	345, 653
BssECI	CCNNGG	4 cut(s)	429, 616, 827, 1103
BssMI	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
BssT1I	CCWWGG	2 cut(s)	429, 616
Bst2UI	CCWGG	4 cut(s)	119, 638, 837, 1104
Bst4CI	ACNGT	3 cut(s)	291, 341, 461
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	3 cut(s)	350, 809, 1056
BstDSI	CCRYGG	2 cut(s)	429, 616
BstENI	CCTNNNNNAGG	1 cut(s)	840
BstF5I	GGATG	5 cut(s)	114, 425, 676, 1099, 1121
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	2 cut(s)	574, 849
BstKTI	GATC	6 cut(s)	902, 928, 952, 1048, 1163, 1279
BstMAI	GTCTC	2 cut(s)	353, 949
BstMBI	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 277, 431, 810
BstNI	CCWGG	4 cut(s)	119, 638, 837, 1104
BstNSI	RCATGY	2 cut(s)	572, 1036
BstSCI	CCNGG	4 cut(s)	117, 636, 835, 1102
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	921
BstV1I	GCAGC	5 cut(s)	33, 36, 39, 607, 1251
BstV2I	GAAGAC	1 cut(s)	604
BstX2I	RGATCY	2 cut(s)	899, 925
BstYI	RGATCY	2 cut(s)	899, 925
Bsu15I	ATCGAT	1 cut(s)	1002
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	6 cut(s)	434, 499, 641, 868, 932, 1120
BsuTUI	ATCGAT	1 cut(s)	1002
BtgI	CCRYGG	2 cut(s)	429, 616
BtsCI	GGATG	5 cut(s)	114, 425, 676, 1099, 1121
BtsI	GCAGTG	3 cut(s)	37, 1172, 1259
BtsIMutI	CAGTG	3 cut(s)	37, 1172, 1259
Cac8I	GCNNGC	1 cut(s)	570
CfoI	GCGC	2 cut(s)	574, 849
Cfr13I	GGNCC	4 cut(s)	433, 497, 867, 1094
ClaI	ATCGAT	1 cut(s)	1002
Csp6I	GTAC	4 cut(s)	287, 342, 389, 1039
CspCI	CAANNNNNGTGG	2 cut(s)	974, 1009
CviAII	CATG	8 cut(s)	397, 430, 481, 569, 617, 934, 1033, 1071
CviQI	GTAC	4 cut(s)	287, 342, 389, 1039
DdeI	CTNAG	3 cut(s)	350, 809, 1056
DpnI	GATC	6 cut(s)	901, 927, 951, 1047, 1162, 1278
DpnII	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
EaeI	YGGCCR	2 cut(s)	930, 1118
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	907
Eco130I	CCWWGG	2 cut(s)	429, 616
Eco47I	GGWCC	1 cut(s)	1094
Eco88I	CYCGRG	1 cut(s)	826
EcoNI	CCTNNNNNAGG	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	1149
EcoRII	CCWGG	4 cut(s)	117, 636, 835, 1102
EcoT14I	CCWWGG	2 cut(s)	429, 616
EcoT22I	ATGCAT	1 cut(s)	700
ErhI	CCWWGG	2 cut(s)	429, 616
FaeI	CATG	8 cut(s)	400, 433, 484, 572, 620, 937, 1036, 1074
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	8 cut(s)	396, 429, 480, 568, 616, 933, 1032, 1070
FbaI	TGATCA	1 cut(s)	949
Fnu4HI	GCNGC	6 cut(s)	22, 25, 28, 278, 596, 1265
FokI	GGATG	5 cut(s)	101, 412, 683, 1086, 1128
Fsp4HI	GCNGC	6 cut(s)	22, 25, 28, 278, 596, 1265
FspAI	RTGCGCAY	1 cut(s)	573
FspBI	CTAG	3 cut(s)	36, 357, 1282
FspI	TGCGCA	1 cut(s)	573
GlaI	GCGC	2 cut(s)	573, 848
GluI	GCNGC	6 cut(s)	22, 25, 28, 278, 596, 1265
GsuI	CTGGAG	1 cut(s)	1256
HaeII	RGCGCY	1 cut(s)	850
HaeIII	GGCC	6 cut(s)	434, 499, 641, 868, 932, 1120
HhaI	GCGC	2 cut(s)	574, 849
Hin1II	CATG	8 cut(s)	400, 433, 484, 572, 620, 937, 1036, 1074
Hin6I	GCGC	2 cut(s)	572, 847
HinP1I	GCGC	2 cut(s)	572, 847
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	802
HinfI	GANTC	3 cut(s)	446, 590, 740
HphI	GGTGA	2 cut(s)	22, 204
Hpy166II	GTNNAC	5 cut(s)	391, 646, 790, 919, 1030
Hpy188I	TCNGA	6 cut(s)	468, 739, 949, 954, 1057, 1160
Hpy188III	TCNNGA	4 cut(s)	136, 487, 766, 1235
Hpy8I	GTNNAC	5 cut(s)	391, 646, 790, 919, 1030
Hpy99I	CGWCG	2 cut(s)	407, 684
HpyAV	CCTTC	1 cut(s)	588
HpyCH4III	ACNGT	3 cut(s)	291, 341, 461
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 277, 431, 810
HpyF3I	CTNAG	3 cut(s)	350, 809, 1056
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	8 cut(s)	400, 433, 484, 572, 620, 937, 1036, 1074
HspAI	GCGC	2 cut(s)	572, 847
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
LmnI	GCTCC	5 cut(s)	262, 517, 1062, 1237, 1261
Lsp1109I	GCAGC	5 cut(s)	33, 36, 39, 607, 1251
LweI	GCATC	4 cut(s)	123, 173, 434, 661
MaeI	CTAG	3 cut(s)	36, 357, 1282
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	5 cut(s)	105, 140, 151, 411, 1245
MalI	GATC	6 cut(s)	901, 927, 951, 1047, 1162, 1278
MboI	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
MboII	GAAGA	3 cut(s)	79, 604, 636
MflI	RGATCY	2 cut(s)	899, 925
MhlI	GDGCHC	1 cut(s)	921
MlsI	TGGCCA	2 cut(s)	932, 1120
MluCI	AATT	9 cut(s)	62, 67, 184, 242, 334, 527, 627, 1109, 1149
MluNI	TGGCCA	2 cut(s)	932, 1120
MmeI	TCCRAC	2 cut(s)	648, 1043
Mox20I	TGGCCA	2 cut(s)	932, 1120
Mph1103I	ATGCAT	1 cut(s)	700
MscI	TGGCCA	2 cut(s)	932, 1120
MseI	TTAA	6 cut(s)	180, 192, 333, 585, 630, 759
Msp20I	TGGCCA	2 cut(s)	932, 1120
MspR9I	CCNGG	4 cut(s)	119, 638, 837, 1104
Mva1269I	GAATGC	1 cut(s)	747
MvaI	CCWGG	4 cut(s)	119, 638, 837, 1104
MwoI	GCNNNNNNNGC	4 cut(s)	27, 277, 431, 810
NcoI	CCATGG	2 cut(s)	429, 616
NdeII	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
NlaIII	CATG	8 cut(s)	400, 433, 484, 572, 620, 937, 1036, 1074
NlaIV	GGNNCC	4 cut(s)	435, 513, 869, 1239
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	105, 151
NsbI	TGCGCA	1 cut(s)	573
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	2 cut(s)	572, 1036
PaeI	GCATGC	1 cut(s)	572
PciI	ACATGT	1 cut(s)	1032
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	747
PfeI	GAWTC	3 cut(s)	446, 590, 740
PkrI	GCNGC	6 cut(s)	23, 26, 29, 279, 597, 1266
PscI	ACATGT	1 cut(s)	1032
PshBI	ATTAAT	2 cut(s)	180, 630
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	4 cut(s)	117, 636, 835, 1102
PspGI	CCWGG	4 cut(s)	117, 636, 835, 1102
PspN4I	GGNNCC	4 cut(s)	435, 513, 869, 1239
PspPI	GGNCC	4 cut(s)	433, 497, 867, 1094
PsuI	RGATCY	2 cut(s)	899, 925
RsaI	GTAC	4 cut(s)	288, 343, 390, 1040
RsaNI	GTAC	4 cut(s)	287, 342, 389, 1039
SaqAI	TTAA	6 cut(s)	180, 192, 333, 585, 630, 759
SatI	GCNGC	6 cut(s)	22, 25, 28, 278, 596, 1265
Sau3AI	GATC	6 cut(s)	899, 925, 949, 1045, 1160, 1276
Sau96I	GGNCC	4 cut(s)	433, 497, 867, 1094
ScrFI	CCNGG	4 cut(s)	119, 638, 837, 1104
SduI	GDGCHC	1 cut(s)	921
SfaNI	GCATC	4 cut(s)	123, 173, 434, 661
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	1094
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
SpeI	ACTAGT	1 cut(s)	356
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	9 cut(s)	62, 67, 184, 242, 334, 527, 627, 1109, 1149
SsiI	CCGC	5 cut(s)	8, 269, 275, 278, 892
SspMI	CTAG	3 cut(s)	36, 357, 1282
StyD4I	CCNGG	4 cut(s)	117, 636, 835, 1102
StyI	CCWWGG	2 cut(s)	429, 616
TaaI	ACNGT	3 cut(s)	291, 341, 461
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	6 cut(s)	534, 622, 799, 819, 1002, 1085
TasI	AATT	9 cut(s)	62, 67, 184, 242, 334, 527, 627, 1109, 1149
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	446, 590, 740
Tru1I	TTAA	6 cut(s)	180, 192, 333, 585, 630, 759
Tru9I	TTAA	6 cut(s)	180, 192, 333, 585, 630, 759
TscAI	CASTG	3 cut(s)	37, 1172, 1266
TseFI	GTSAC	2 cut(s)	105, 151
TseI	GCWGC	5 cut(s)	21, 24, 27, 595, 1264
Tsp45I	GTSAC	2 cut(s)	105, 151
TspDTI	ATGAA	3 cut(s)	469, 603, 1182
TspRI	CASTG	3 cut(s)	37, 1172, 1266
VneI	GTGCAC	1 cut(s)	917
VpaK11BI	GGWCC	1 cut(s)	1094
VspI	ATTAAT	2 cut(s)	180, 630
XagI	CCTNNNNNAGG	1 cut(s)	840
XapI	RAATTY	3 cut(s)	527, 1109, 1149
XceI	RCATGY	2 cut(s)	572, 1036
XspI	CTAG	3 cut(s)	36, 357, 1282
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.