Prupe.4G121700_v2.0.a1

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006362
Physical Location & Seq
Forward (+)
6592300 .. 6596622
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G121700.1

Sequence Viewer

Length: 1110 bp
ATGATGATGAGGTACCAGAGAGTGAGCCCAGATTGTGTCCCTTTGAGCAATGGCAAGAAGCCAGCCATGAGAGCCATATCCAAAGAAGATGGGTTGACAGAGACTCTCACAACCAGCACAGTCTCAACTTTAGAACCCACAAAACCATTCAGATTCCGATCCCAACCCACAACCCAAGACCCGACACAATCCCAATTCGGAGCCCGACCCACTTCACCCAACTCCGACAACCACCACCGGAGCCCGACCCAGCGGCAGGACAAGAGCCCCAGCCGGACCCCAAGCCCCAGCCGCGGGGCCGGCGATGTGTTGTTGCAGTGGGGCCACAAGAAGCGGTCGAGAGTCTCAAGAACTGAGATCCGAGCAGCGACCGATGAGTCTTCTTCCTCAGCTCAAGCAAGGCAAGCTGGTGTGAAGCTGCAGAGGAGAGACAAGTCTATGCCGCCGCCGCCTCCTCCTCCGCCCCTTTCTTCCTCCTCCGCAACGTCGTCGTTTTCCAACGGCAGACTTAGAAAGGAAGCGTCCGCGTTGCTTCCTAGCAGGAATTTAGAAGATCGATCTGCTGTGGTTAATGGGTCCCCATCAAGAAACCCAACTGGCGGCAGCAACAGCCGAGCTGTTTCTAGATCTACGGTTGGGAAAAGATCTCCTCCTCCTGAGAAAAATGACAGAAAGCTGCCTCCTTGCTCAGGCAGGTCATCAGCCAAAGATGACAAGCCAAATGGACCCTCTGTGCAAGTTGATCGTCAGCACCATGCTGATTCTGCTTCATTGCAATCGGACCAATTAGCTGCCACTGCTAATGGTGCTGCACCAGTTGCAGCAGCAGATAAGGTCAACTATGAAGTGGTTGAGTGGCCTAGAATTTATATTGCCCTGTCAAGAAAAGAGAAGGAAGATGATTTCCTTGCAATGAAAGGCACAAAGCTCCCCCAGAGACCCAAGAAAAGGGCCAAAAACATTGACAGAACCCTCCAGTATTGTTTTCCAGGGATGTGGCTGTCTGATTTGACAAGGAATCGCTATGAGGTCAGGGAGAAGAAATGTGTGAAGAAGCAAAAGCGAAGGGGACTCAAGGGAATGGAGAGCGTGGACAGCGATTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

370

Amino Acids

40.66

Weight (kDa)

10.34

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 684
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 12
AccII CGCG 2 cut(s) 294, 527
AclWI GGATC 2 cut(s) 153, 352
AcsI RAATTY 2 cut(s) 544, 864
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 6 cut(s) 256, 293, 294, 599, 689, 948
AjnI CCWGG 1 cut(s) 988
AluBI AGCT 7 cut(s) 392, 407, 418, 617, 676, 791, 928
AluI AGCT 7 cut(s) 392, 407, 418, 617, 676, 791, 928
Alw26I GTCTC 5 cut(s) 95, 127, 349, 423, 931
AlwI GGATC 2 cut(s) 153, 352
AoxI GGCC 4 cut(s) 297, 322, 857, 951
ApeKI GCWGC 8 cut(s) 365, 418, 603, 676, 791, 809, 821, 824
ApoI RAATTY 2 cut(s) 544, 864
Asp718I GGTACC 1 cut(s) 12
AspS9I GGNCC 7 cut(s) 276, 297, 322, 576, 725, 781, 951
AsuHPI GGTGA 1 cut(s) 207
AvaII GGWCC 4 cut(s) 276, 576, 725, 781
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 4 cut(s) 29, 205, 245, 269
BbsI GAAGAC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 388
BbvI GCAGC 8 cut(s) 377, 405, 615, 663, 778, 796, 833, 836
BccI CCATC 2 cut(s) 83, 589
BceAI ACGGC 1 cut(s) 517
BcgI CGANNNNNNTGC 4 cut(s) 471, 505, 725, 759
BciT130I CCWGG 1 cut(s) 990
BcoDI GTCTC 5 cut(s) 95, 127, 349, 423, 931
BfaI CTAG 3 cut(s) 537, 624, 861
BfmI CTRYAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 684
BglII AGATCT 2 cut(s) 626, 644
Bme1390I CCNGG 1 cut(s) 990
Bme18I GGWCC 4 cut(s) 276, 576, 725, 781
BmgT120I GGNCC 7 cut(s) 276, 297, 322, 576, 725, 781, 951
BmiI GGNNCC 9 cut(s) 14, 202, 242, 278, 298, 323, 577, 578, 727
BmrFI CCNGG 1 cut(s) 990
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 959
Bpu10I CCTNAGC 2 cut(s) 388, 688
BpuEI CTTGAG 3 cut(s) 331, 378, 1058
Bsa29I ATCGAT 1 cut(s) 556
BsaBI GATNNNNATC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 931
BsaJI CCNNGG 2 cut(s) 292, 989
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 6 cut(s) 256, 293, 294, 599, 689, 948
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 601, 815, 976
Bse3DI GCAATG 3 cut(s) 55, 770, 918
Bse8I GATNNNNATC 1 cut(s) 157
BseBI CCWGG 1 cut(s) 990
BseCI ATCGAT 1 cut(s) 556
BseDI CCNNGG 2 cut(s) 292, 989
BseGI GGATG 1 cut(s) 999
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 6 cut(s) 256, 293, 294, 599, 689, 948
BseMI GCAATG 3 cut(s) 55, 770, 918
BseMII CTCAG 4 cut(s) 345, 402, 648, 702
BseNI ACTGG 3 cut(s) 601, 815, 976
BseRI GAGGAG 6 cut(s) 439, 444, 447, 466, 639, 642
BseXI GCAGC 8 cut(s) 377, 405, 615, 663, 778, 796, 833, 836
BseYI CCCAGC 3 cut(s) 249, 269, 287
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 2 cut(s) 294, 527
Bsh1285I CGRYCG 2 cut(s) 338, 372
BshFI GGCC 4 cut(s) 299, 324, 859, 953
BshNI GGYRCC 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 556
BsiEI CGRYCG 2 cut(s) 338, 372
BsiSI CCGG 3 cut(s) 238, 274, 300
BslFI GGGAC 3 cut(s) 23, 562, 1083
BslI CCNNNNNNNGG 6 cut(s) 256, 293, 294, 599, 689, 948
BsmAI GTCTC 5 cut(s) 95, 127, 349, 423, 931
BsmFI GGGAC 3 cut(s) 23, 562, 1083
BsnI GGCC 4 cut(s) 299, 324, 859, 953
Bso31I GGTCTC 1 cut(s) 931
Bsp1286I GDGCHC 4 cut(s) 29, 205, 245, 269
Bsp143I GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
BspANI GGCC 4 cut(s) 299, 324, 859, 953
BspCNI CTCAG 4 cut(s) 346, 401, 649, 701
BspDI ATCGAT 1 cut(s) 556
BspFNI CGCG 2 cut(s) 294, 527
BspLI GGNNCC 9 cut(s) 14, 202, 242, 278, 298, 323, 577, 578, 727
BspMAI CTGCAG 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 684
BspPI GGATC 2 cut(s) 153, 352
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 931
BsrDI GCAATG 3 cut(s) 55, 770, 918
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 3 cut(s) 601, 815, 976
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 292, 989
BssMI GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 2 cut(s) 121, 634
BstAPI GCANNNNNTGC 1 cut(s) 818
BstC8I GCNNGC 3 cut(s) 63, 301, 405
BstDEI CTNAG 5 cut(s) 354, 388, 509, 657, 688
BstDSI CCRYGG 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 1 cut(s) 999
BstFNI CGCG 2 cut(s) 294, 527
BstKTI GATC 7 cut(s) 161, 360, 556, 560, 629, 647, 745
BstMAI GTCTC 5 cut(s) 95, 127, 349, 423, 931
BstMBI GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
BstMCI CGRYCG 2 cut(s) 338, 372
BstNI CCWGG 1 cut(s) 990
BstSCI CCNGG 1 cut(s) 988
BstSFI CTRYAG 1 cut(s) 419
BstUI CGCG 2 cut(s) 294, 527
BstV1I GCAGC 8 cut(s) 377, 405, 615, 663, 778, 796, 833, 836
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 3 cut(s) 357, 626, 644
BstXI CCANNNNNNTGG 1 cut(s) 996
BstYI RGATCY 3 cut(s) 357, 626, 644
Bsu15I ATCGAT 1 cut(s) 556
BsuRI GGCC 4 cut(s) 299, 324, 859, 953
BsuTUI ATCGAT 1 cut(s) 556
BtgI CCRYGG 1 cut(s) 292
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 1 cut(s) 999
BtsI GCAGTG 2 cut(s) 323, 795
BtsIMutI CAGTG 2 cut(s) 323, 795
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 3 cut(s) 63, 301, 405
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 7 cut(s) 276, 297, 322, 576, 725, 781, 951
Cfr42I CCGCGG 1 cut(s) 295
ClaI ATCGAT 1 cut(s) 556
CseI GACGC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 67, 755
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 5 cut(s) 354, 388, 509, 657, 688
DpnI GATC 7 cut(s) 160, 359, 555, 559, 628, 646, 744
DpnII GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
EciI GGCGGA 1 cut(s) 450
Eco24I GRGCYC 4 cut(s) 29, 205, 245, 269
Eco31I GGTCTC 1 cut(s) 931
Eco47I GGWCC 4 cut(s) 276, 576, 725, 781
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 988
EcoT38I GRGCYC 4 cut(s) 29, 205, 245, 269
FaeI CATG 2 cut(s) 70, 758
FaiI YATR 7 cut(s) 68, 77, 440, 756, 843, 870, 1026
FaqI GGGAC 3 cut(s) 23, 562, 1083
FatI CATG 2 cut(s) 66, 754
FauI CCCGC 1 cut(s) 287
FokI GGATG 1 cut(s) 1006
FriOI GRGCYC 4 cut(s) 29, 205, 245, 269
FspBI CTAG 3 cut(s) 537, 624, 861
GsaI CCCAGC 3 cut(s) 253, 273, 291
GsuI CTGGAG 1 cut(s) 959
HaeIII GGCC 4 cut(s) 299, 324, 859, 953
HapII CCGG 3 cut(s) 238, 274, 300
HgaI GACGC 1 cut(s) 510
Hin1II CATG 2 cut(s) 70, 758
HincII GTYRAC 2 cut(s) 96, 838
HindII GTYRAC 2 cut(s) 96, 838
HinfI GANTC 8 cut(s) 103, 153, 342, 377, 761, 1018, 1071, 1100
HpaII CCGG 3 cut(s) 238, 274, 300
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 3 cut(s) 96, 838, 1093
Hpy188I TCNGA 8 cut(s) 152, 158, 200, 226, 362, 781, 1006, 1105
Hpy188III TCNNGA 6 cut(s) 339, 348, 585, 624, 656, 882
Hpy8I GTNNAC 3 cut(s) 96, 838, 1093
Hpy99I CGWCG 2 cut(s) 490, 493
HpyAV CCTTC 2 cut(s) 886, 1059
HpyCH4III ACNGT 2 cut(s) 121, 634
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 7 cut(s) 316, 421, 736, 775, 812, 821, 911
HpyF3I CTNAG 5 cut(s) 354, 388, 509, 657, 688
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 2 cut(s) 70, 758
KflI GGGWCCC 1 cut(s) 576
KpnI GGTACC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
KspI CCGCGG 1 cut(s) 295
Kzo9I GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
LmnI GCTCC 3 cut(s) 200, 240, 933
Lsp1109I GCAGC 8 cut(s) 377, 405, 615, 663, 778, 796, 833, 836
MaeI CTAG 3 cut(s) 537, 624, 861
MaeII ACGT 1 cut(s) 485
MalI GATC 7 cut(s) 160, 359, 555, 559, 628, 646, 744
MboI GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
MboII GAAGA 8 cut(s) 98, 372, 375, 462, 563, 908, 1051, 1063
MflI RGATCY 3 cut(s) 357, 626, 644
MhlI GDGCHC 4 cut(s) 29, 205, 245, 269
MluCI AATT 4 cut(s) 194, 544, 785, 864
MlyI GAGTC 4 cut(s) 97, 351, 386, 1065
MmeI TCCRAC 2 cut(s) 249, 522
MroNI GCCGGC 1 cut(s) 299
MseI TTAA 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 253, 294
MspI CCGG 3 cut(s) 238, 274, 300
MspR9I CCNGG 1 cut(s) 990
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 2 cut(s) 294, 527
NaeI GCCGGC 1 cut(s) 301
NdeII GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 2 cut(s) 70, 758
NlaIV GGNNCC 9 cut(s) 14, 202, 242, 278, 298, 323, 577, 578, 727
NmeAIII GCCGAG 1 cut(s) 638
PdiI GCCGGC 1 cut(s) 301
PfeI GAWTC 4 cut(s) 153, 761, 1018, 1100
PleI GAGTC 4 cut(s) 97, 350, 385, 1065
PpsI GAGTC 4 cut(s) 97, 350, 385, 1065
PpuMI RGGWCCY 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 988
PspFI CCCAGC 3 cut(s) 249, 269, 287
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 9 cut(s) 14, 202, 242, 278, 298, 323, 577, 578, 727
PspPI GGNCC 7 cut(s) 276, 297, 322, 576, 725, 781, 951
PspPPI RGGWCCY 1 cut(s) 576
PstI CTGCAG 1 cut(s) 423
PsuI RGATCY 3 cut(s) 357, 626, 644
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacII CCGCGG 1 cut(s) 295
SaqAI TTAA 1 cut(s) 570
Sau3AI GATC 7 cut(s) 158, 357, 553, 557, 626, 644, 742
Sau96I GGNCC 7 cut(s) 276, 297, 322, 576, 725, 781, 951
SchI GAGTC 4 cut(s) 97, 351, 386, 1065
ScrFI CCNGG 1 cut(s) 990
SduI GDGCHC 4 cut(s) 29, 205, 245, 269
SfcI CTRYAG 1 cut(s) 419
Sfr303I CCGCGG 1 cut(s) 295
SgrBI CCGCGG 1 cut(s) 295
SinI GGWCC 4 cut(s) 276, 576, 725, 781
SmlI CTYRAG 3 cut(s) 346, 393, 1073
SmoI CTYRAG 3 cut(s) 346, 393, 1073
Sse9I AATT 4 cut(s) 194, 544, 785, 864
SspMI CTAG 3 cut(s) 537, 624, 861
StyD4I CCNGG 1 cut(s) 988
TaaI ACNGT 2 cut(s) 121, 634
TaiI ACGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 338, 556
TaqII GACCGA 1 cut(s) 386
TasI AATT 4 cut(s) 194, 544, 785, 864
TauI GCSGC 6 cut(s) 256, 294, 445, 448, 451, 603
TfiI GAWTC 4 cut(s) 153, 761, 1018, 1100
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 2 cut(s) 323, 802
TseI GCWGC 8 cut(s) 365, 418, 603, 676, 791, 809, 821, 824
TspDTI ATGAA 3 cut(s) 759, 858, 929
TspRI CASTG 2 cut(s) 323, 802
VpaK11BI GGWCC 4 cut(s) 276, 576, 725, 781
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 2 cut(s) 544, 864
XbaI TCTAGA 1 cut(s) 623
XspI CTAG 3 cut(s) 537, 624, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.