RchiOBHm_Chr5g0022171

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006362
Physical Location & Seq
Forward (+)
16249087 .. 16253469
4383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30214

Sequence Viewer

Length: 1017 bp
ATGATGACAGAGAACACAACAACCACAACAAGCAGCACAGTTTCTTCGTTGGAATCCAAACCCTTCAGATTCCGATCCCAACCCACGGCCCAAGACCCGACCCTCTCCCAATTCGGAGGCCTACCCACTTCTCCCAGCCCCGAAAACCGCCCCACCCACAGCCCCGGCCGCACCCCCAGCCCCATCCGCGCCGGCTCCGGCGGCGACGTGCTGCTCCAGTGGGGCCACAAAAAGAGGTCCCGGGTCTCGAGAACCGAGATCCGGGTCTTGGCTGATGAGTCCTCCTCATCAGCCCAAGCAAGACAAGCCAAGGTCCAAAGGCGAGCCGCCCACGCTGCCGCCGTGGCAGACAAGTCCATGCCTCCGCCGCCTCCTCCCCCCCGGTCCCTTCTTCCAGCTCAACGTCGTCGTTTTCGAATGGTAGACTCAGAAAGGAAGCCTCAGGGTTGCTTCCAAACAGTTGGGAATTTGGAAGATCGATCCGCTGTGGTTAATGGGTCACCCTCGAGAAGCACTGCCGTCGGGAACGGTCGTGCTGCTTCTAGATCTATAGCTGGGAAAAGGTCTCCTCCTCCAGAGAAAAGTGAGAGAAAGATGCCATCTTGCTCGGGAAGGTCAGCCAAAGATGACAAGGCAAATGGGTCATCTGATCACCGTGCGAACCATGTCGATTCCACCTCATTACAATCGGAACAATTAGCTGGTGCTGCTAACCATTCTGCCGCACCAGCAGCTGAAAAAGTGAACTATGAAGTGGTGGAGTGGCCGAGAATTTACGTGGCTTTGTCTAGGAAGGAGAAAGAAGATGATTTCCTTGCAATGAAAGGCACGAAGCTGCCTCAGAGACCCAAGAAAAGGGCCAAGAACATTGACAGAACTCTTCAGTATTGTTTCCCAGGGATGTGGCTATCTGACTTGACAAGGAATCGCTATGAGGTCAGGGAGAAGAAATGTGTGAAGAAGCAGAAGCGAAGGGGACTGAAAGGGATGGAGAGCGTGGAAAGTGATTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

338

Amino Acids

37.17

Weight (kDa)

10.37

Isoelectric Point (pI)

74.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 262 - 311 1.6e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AccII CGCG 1 cut(s) 189
AclWI GGATC 3 cut(s) 69, 253, 474
AcoI YGGCCR 2 cut(s) 166, 764
AcsI RAATTY 2 cut(s) 466, 771
AcuI CTGAAG 2 cut(s) 49, 866
AfiI CCNNNNNNNGG 4 cut(s) 85, 261, 268, 855
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 895
AluBI AGCT 5 cut(s) 398, 554, 701, 734, 835
AluI AGCT 5 cut(s) 398, 554, 701, 734, 835
Alw26I GTCTC 3 cut(s) 250, 570, 838
AlwI GGATC 3 cut(s) 69, 253, 474
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 4 cut(s) 240, 247, 505, 607
AoxI GGCC 6 cut(s) 87, 118, 166, 223, 764, 858
ApeKI GCWGC 7 cut(s) 33, 211, 335, 536, 707, 731, 835
ApoI RAATTY 2 cut(s) 466, 771
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 6 cut(s) 88, 223, 237, 313, 384, 858
AsuC2I CCSGG 5 cut(s) 165, 241, 242, 263, 382
AsuHPI GGTGA 2 cut(s) 492, 644
AsuII TTCGAA 1 cut(s) 415
AvaI CYCGRG 4 cut(s) 240, 247, 505, 607
AvaII GGWCC 3 cut(s) 237, 313, 384
AxyI CCTNAGG 1 cut(s) 441
BbvI GCAGC 7 cut(s) 45, 198, 322, 523, 694, 743, 822
BccI CCATC 3 cut(s) 191, 607, 982
BceAI ACGGC 3 cut(s) 102, 326, 503
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 1 cut(s) 897
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 5 cut(s) 165, 241, 242, 263, 382
BcoDI GTCTC 3 cut(s) 250, 570, 838
BfaI CTAG 2 cut(s) 543, 789
BfmI CTRYAG 1 cut(s) 549
BglI GCCNNNNNGGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 545
Bme1390I CCNGG 6 cut(s) 165, 241, 242, 263, 382, 897
Bme18I GGWCC 3 cut(s) 237, 313, 384
BmeT110I CYCGRG 4 cut(s) 240, 247, 505, 607
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 6 cut(s) 88, 223, 237, 313, 384, 858
BmiI GGNNCC 4 cut(s) 196, 224, 239, 386
BmrFI CCNGG 6 cut(s) 165, 241, 242, 263, 382, 897
BmsI GCATC 1 cut(s) 585
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpmI CTGGAG 2 cut(s) 200, 558
Bpu14I TTCGAA 1 cut(s) 415
BpuMI CCSGG 5 cut(s) 165, 241, 242, 263, 382
Bsa29I ATCGAT 1 cut(s) 478
BsaAI YACGTR 1 cut(s) 778
BsaBI GATNNNNATC 1 cut(s) 73
BsaI GGTCTC 3 cut(s) 250, 570, 838
BsaJI CCNNGG 8 cut(s) 84, 163, 240, 309, 342, 380, 895, 896
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 261, 268, 855
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 217
Bse21I CCTNAGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 1 cut(s) 897
BseCI ATCGAT 1 cut(s) 478
BseDI CCNNGG 8 cut(s) 84, 163, 240, 309, 342, 380, 895, 896
BseGI GGATG 3 cut(s) 183, 906, 993
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 4 cut(s) 85, 261, 268, 855
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 441, 455, 854
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 4 cut(s) 274, 363, 558, 561
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 7 cut(s) 45, 198, 322, 523, 694, 743, 822
BseYI CCCAGC 3 cut(s) 134, 176, 554
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 2 cut(s) 169, 532
BshFI GGCC 6 cut(s) 89, 120, 168, 225, 766, 860
BshVI ATCGAT 1 cut(s) 478
BsiEI CGRYCG 2 cut(s) 169, 532
BsiHKCI CYCGRG 4 cut(s) 240, 247, 505, 607
BsiSI CCGG 6 cut(s) 165, 192, 198, 241, 262, 382
BslFI GGGAC 3 cut(s) 223, 370, 990
BslI CCNNNNNNNGG 4 cut(s) 85, 261, 268, 855
BsmAI GTCTC 3 cut(s) 250, 570, 838
BsmFI GGGAC 3 cut(s) 223, 370, 990
BsnI GGCC 6 cut(s) 89, 120, 168, 225, 766, 860
Bso31I GGTCTC 3 cut(s) 250, 570, 838
BsoBI CYCGRG 4 cut(s) 240, 247, 505, 607
Bsp119I TTCGAA 1 cut(s) 415
Bsp143I GATC 6 cut(s) 74, 258, 475, 479, 545, 649
BspANI GGCC 6 cut(s) 89, 120, 168, 225, 766, 860
BspCNI CTCAG 3 cut(s) 440, 454, 853
BspDI ATCGAT 1 cut(s) 478
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 196, 224, 239, 386
BspPI GGATC 3 cut(s) 69, 253, 474
BspT104I TTCGAA 1 cut(s) 415
BspTNI GGTCTC 3 cut(s) 250, 570, 838
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 8 cut(s) 84, 163, 240, 309, 342, 380, 895, 896
BssMI GATC 6 cut(s) 74, 258, 475, 479, 545, 649
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 897
Bst4CI ACNGT 4 cut(s) 40, 460, 530, 656
Bst6I CTCTTC 1 cut(s) 885
BstBAI YACGTR 1 cut(s) 778
BstBI TTCGAA 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 193, 324
BstDEI CTNAG 3 cut(s) 427, 441, 840
BstDSI CCRYGG 2 cut(s) 84, 342
BstEII GGTNACC 1 cut(s) 498
BstF5I GGATG 3 cut(s) 183, 906, 993
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 6 cut(s) 77, 261, 478, 482, 548, 652
BstMAI GTCTC 3 cut(s) 250, 570, 838
BstMBI GATC 6 cut(s) 74, 258, 475, 479, 545, 649
BstMCI CGRYCG 2 cut(s) 169, 532
BstNI CCWGG 1 cut(s) 897
BstPI GGTNACC 1 cut(s) 498
BstSCI CCNGG 6 cut(s) 163, 239, 240, 261, 380, 895
BstSFI CTRYAG 1 cut(s) 549
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 7 cut(s) 45, 198, 322, 523, 694, 743, 822
BstX2I RGATCY 2 cut(s) 258, 545
BstXI CCANNNNNNTGG 2 cut(s) 461, 903
BstYI RGATCY 2 cut(s) 258, 545
BstZI CGGCCG 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 6 cut(s) 89, 120, 168, 225, 766, 860
BsuTUI ATCGAT 1 cut(s) 478
BtgI CCRYGG 2 cut(s) 84, 342
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 3 cut(s) 183, 906, 993
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 224, 513
Cac8I GCNNGC 2 cut(s) 193, 324
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 6 cut(s) 88, 223, 237, 313, 384, 858
Cfr9I CCCGGG 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 478
CviAII CATG 2 cut(s) 358, 665
DdeI CTNAG 3 cut(s) 427, 441, 840
DpnI GATC 6 cut(s) 76, 260, 477, 481, 547, 651
DpnII GATC 6 cut(s) 74, 258, 475, 479, 545, 649
EaeI YGGCCR 2 cut(s) 166, 764
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 885
EarI CTCTTC 1 cut(s) 885
EciI GGCGGA 1 cut(s) 354
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 120
Eco31I GGTCTC 3 cut(s) 250, 570, 838
Eco47I GGWCC 3 cut(s) 237, 313, 384
Eco52I CGGCCG 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 49, 866
Eco81I CCTNAGG 1 cut(s) 441
Eco88I CYCGRG 4 cut(s) 240, 247, 505, 607
Eco91I GGTNACC 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 237
EcoO65I GGTNACC 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 895
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 2 cut(s) 361, 668
FaiI YATR 5 cut(s) 359, 551, 666, 750, 933
FaqI GGGAC 3 cut(s) 223, 370, 990
FatI CATG 2 cut(s) 357, 664
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 1 cut(s) 423
FokI GGATG 3 cut(s) 170, 913, 1000
FspBI CTAG 2 cut(s) 543, 789
GlaI GCGC 1 cut(s) 190
GsaI CCCAGC 3 cut(s) 138, 180, 558
GsuI CTGGAG 2 cut(s) 200, 558
HaeIII GGCC 6 cut(s) 89, 120, 168, 225, 766, 860
HapII CCGG 6 cut(s) 165, 192, 198, 241, 262, 382
HhaI GCGC 1 cut(s) 191
Hin1II CATG 2 cut(s) 361, 668
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 7 cut(s) 53, 69, 278, 425, 671, 925, 1007
HpaII CCGG 6 cut(s) 165, 192, 198, 241, 262, 382
HphI GGTGA 2 cut(s) 492, 644
Hpy166II GTNNAC 2 cut(s) 424, 745
Hpy188I TCNGA 9 cut(s) 68, 74, 116, 430, 649, 691, 843, 913, 1012
Hpy188III TCNNGA 7 cut(s) 247, 249, 507, 523, 543, 575, 609
Hpy8I GTNNAC 2 cut(s) 424, 745
Hpy99I CGWCG 4 cut(s) 209, 408, 411, 524
HpyAV CCTTC 5 cut(s) 73, 398, 606, 787, 966
HpyCH4III ACNGT 4 cut(s) 40, 460, 530, 656
HpyCH4IV ACGT 3 cut(s) 207, 403, 777
HpyCH4V TGCA 1 cut(s) 818
HpyF3I CTNAG 3 cut(s) 427, 441, 840
HpySE526I ACGT 3 cut(s) 207, 403, 777
Hsp92II CATG 2 cut(s) 361, 668
HspAI GCGC 1 cut(s) 189
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 6 cut(s) 74, 258, 475, 479, 545, 649
LmnI GCTCC 2 cut(s) 200, 219
Lsp1109I GCAGC 7 cut(s) 45, 198, 322, 523, 694, 743, 822
LweI GCATC 1 cut(s) 585
MaeI CTAG 2 cut(s) 543, 789
MaeII ACGT 3 cut(s) 207, 403, 777
MaeIII GTNAC 1 cut(s) 498
MalI GATC 6 cut(s) 76, 260, 477, 481, 547, 651
MboI GATC 6 cut(s) 74, 258, 475, 479, 545, 649
MboII GAAGA 7 cut(s) 36, 383, 485, 815, 872, 958, 970
MflI RGATCY 2 cut(s) 258, 545
MluCI AATT 4 cut(s) 110, 466, 695, 771
MlyI GAGTC 2 cut(s) 287, 419
MmeI TCCRAC 1 cut(s) 30
MroNI GCCGGC 1 cut(s) 191
MseI TTAA 1 cut(s) 492
MspA1I CMGCKG 2 cut(s) 485, 734
MspI CCGG 6 cut(s) 165, 192, 198, 241, 262, 382
MspR9I CCNGG 6 cut(s) 165, 241, 242, 263, 382, 897
MvaI CCWGG 1 cut(s) 897
MvnI CGCG 1 cut(s) 189
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 5 cut(s) 165, 241, 242, 263, 382
NdeII GATC 6 cut(s) 74, 258, 475, 479, 545, 649
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 361, 668
NlaIV GGNNCC 4 cut(s) 196, 224, 239, 386
NmeAIII GCCGAG 1 cut(s) 792
NmuCI GTSAC 1 cut(s) 498
NspV TTCGAA 1 cut(s) 415
PaeR7I CTCGAG 2 cut(s) 247, 505
PasI CCCWGGG 1 cut(s) 896
PceI AGGCCT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 412
PdiI GCCGGC 1 cut(s) 193
PfeI GAWTC 5 cut(s) 53, 69, 671, 925, 1007
PleI GAGTC 2 cut(s) 286, 419
PpsI GAGTC 2 cut(s) 286, 419
Ppu21I YACGTR 1 cut(s) 778
PpuMI RGGWCCY 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 895
PspEI GGTNACC 1 cut(s) 498
PspFI CCCAGC 3 cut(s) 134, 176, 554
PspGI CCWGG 1 cut(s) 895
PspN4I GGNNCC 4 cut(s) 196, 224, 239, 386
PspPI GGNCC 6 cut(s) 88, 223, 237, 313, 384, 858
PspPPI RGGWCCY 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 2 cut(s) 258, 545
PvuII CAGCTG 1 cut(s) 734
SaqAI TTAA 1 cut(s) 492
Sau3AI GATC 6 cut(s) 74, 258, 475, 479, 545, 649
Sau96I GGNCC 6 cut(s) 88, 223, 237, 313, 384, 858
SchI GAGTC 2 cut(s) 287, 419
ScrFI CCNGG 6 cut(s) 165, 241, 242, 263, 382, 897
SfaNI GCATC 1 cut(s) 585
SfcI CTRYAG 1 cut(s) 549
Sfr274I CTCGAG 2 cut(s) 247, 505
SfuI TTCGAA 1 cut(s) 415
SinI GGWCC 3 cut(s) 237, 313, 384
SlaI CTCGAG 2 cut(s) 247, 505
SmaI CCCGGG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 247, 505
SmoI CTYRAG 2 cut(s) 247, 505
Sse9I AATT 4 cut(s) 110, 466, 695, 771
SseBI AGGCCT 1 cut(s) 120
SspMI CTAG 2 cut(s) 543, 789
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 6 cut(s) 163, 239, 240, 261, 380, 895
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 4 cut(s) 40, 460, 530, 656
TaiI ACGT 3 cut(s) 210, 406, 780
TaqI TCGA 5 cut(s) 248, 415, 478, 506, 669
TasI AATT 4 cut(s) 110, 466, 695, 771
TauI GCSGC 6 cut(s) 171, 204, 329, 341, 370, 725
TfiI GAWTC 5 cut(s) 53, 69, 671, 925, 1007
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 2 cut(s) 224, 520
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 7 cut(s) 33, 211, 335, 536, 707, 731, 835
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 2 cut(s) 765, 836
TspMI CCCGGG 1 cut(s) 240
TspRI CASTG 2 cut(s) 224, 520
VpaK11BI GGWCC 3 cut(s) 237, 313, 384
XapI RAATTY 2 cut(s) 466, 771
XbaI TCTAGA 1 cut(s) 542
XhoI CTCGAG 2 cut(s) 247, 505
XmaI CCCGGG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 2 cut(s) 543, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.