Rw5G014270

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006362
Physical Location & Seq
Forward (+)
16967455 .. 16969947
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G014270.1

Sequence Viewer

Length: 561 bp
ATGACCAGGAATTTGGAAGATCGATCCGCTGTGGTTAATGGGTCACCCTCGAGAAGCACTGCCGTGGGGAACGGTCGTGCTGCTTCTAGATCTATAGCTGGGAAAAGGTCTCCTCCTCCAGAGAAAAGTGAGAGAAAGATGCCATCTTGCTCGGGAAGGTCAGCCAAAGATGACAAGGCAAATGGGTCATCTGATCACCGTGCGAACCATGTCGATTCCACCTCATTACAATCGGAACAATTAGCTGGAGCTGCTAACCATTCTGCCGCACCAGCAGCTGAAAAAGTGAACTATGAAGTGGTGGAGTGGCCGAGAATTTACGTGGCTTTGTCTAGGAAGGAGAAGGAAGATGATTTCCTTGCAATGAAAGGCACGAAGCTGCCTCAGAGACCCAAGAAAAGGGCCAAGAACATTGACAGAACTCTTCAGTATTGTTTCCCAGGGATGTGGCTATCTGACTTGACAAGGAATCGCTATGAGGTCAGGGAGAAGAAATGTGTGAAGAAGCAGAAGCGAAGGGGGCTGAAAGGGATGGAGAGCGTGGAAAGTGATTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

186

Amino Acids

20.71

Weight (kDa)

9.9

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 110 - 159 6e-23 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 27, 267
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 2 cut(s) 10, 315
AcuI CTGAAG 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 399
AjnI CCWGG 2 cut(s) 5, 439
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 5 cut(s) 98, 245, 251, 278, 379
AluI AGCT 5 cut(s) 98, 245, 251, 278, 379
Alw26I GTCTC 2 cut(s) 114, 382
AlwI GGATC 1 cut(s) 18
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 2 cut(s) 49, 151
AoxI GGCC 2 cut(s) 308, 402
ApeKI GCWGC 4 cut(s) 80, 251, 275, 379
ApoI RAATTY 2 cut(s) 10, 315
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 402
AsuHPI GGTGA 2 cut(s) 36, 188
AvaI CYCGRG 2 cut(s) 49, 151
BbvI GCAGC 4 cut(s) 67, 238, 287, 366
BccI CCATC 2 cut(s) 151, 526
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 7, 441
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 114, 382
BfaI CTAG 2 cut(s) 87, 333
BfmI CTRYAG 1 cut(s) 93
BglII AGATCT 1 cut(s) 89
BisI GCNGC 5 cut(s) 81, 252, 267, 276, 380
BlsI GCNGC 5 cut(s) 82, 253, 268, 277, 381
Bme1390I CCNGG 2 cut(s) 7, 441
BmeT110I CYCGRG 2 cut(s) 49, 151
BmgT120I GGNCC 1 cut(s) 402
BmrFI CCNGG 2 cut(s) 7, 441
BmsI GCATC 1 cut(s) 129
BpmI CTGGAG 2 cut(s) 102, 267
Bsa29I ATCGAT 1 cut(s) 22
BsaAI YACGTR 1 cut(s) 322
BsaI GGTCTC 2 cut(s) 114, 382
BsaJI CCNNGG 3 cut(s) 63, 439, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 7, 441
BseCI ATCGAT 1 cut(s) 22
BseDI CCNNGG 3 cut(s) 63, 439, 440
BseGI GGATG 2 cut(s) 450, 537
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 2 cut(s) 102, 105
BseXI GCAGC 4 cut(s) 67, 238, 287, 366
BseYI CCCAGC 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 310, 404
BshVI ATCGAT 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 76
BsiHKCI CYCGRG 2 cut(s) 49, 151
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 2 cut(s) 114, 382
BsnI GGCC 2 cut(s) 310, 404
Bso31I GGTCTC 2 cut(s) 114, 382
BsoBI CYCGRG 2 cut(s) 49, 151
Bsp143I GATC 4 cut(s) 19, 23, 89, 193
BspACI CCGC 2 cut(s) 27, 267
BspANI GGCC 2 cut(s) 310, 404
BspCNI CTCAG 1 cut(s) 397
BspDI ATCGAT 1 cut(s) 22
BspPI GGATC 1 cut(s) 18
BspTNI GGTCTC 2 cut(s) 114, 382
BsrDI GCAATG 1 cut(s) 369
BssECI CCNNGG 3 cut(s) 63, 439, 440
BssMI GATC 4 cut(s) 19, 23, 89, 193
Bst2UI CCWGG 2 cut(s) 7, 441
Bst4CI ACNGT 2 cut(s) 74, 200
Bst6I CTCTTC 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 42
BstF5I GGATG 2 cut(s) 450, 537
BstKTI GATC 4 cut(s) 22, 26, 92, 196
BstMAI GTCTC 2 cut(s) 114, 382
BstMBI GATC 4 cut(s) 19, 23, 89, 193
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 251, 272, 275, 520
BstNI CCWGG 2 cut(s) 7, 441
BstPI GGTNACC 1 cut(s) 42
BstSCI CCNGG 2 cut(s) 5, 439
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 67, 238, 287, 366
BstX2I RGATCY 1 cut(s) 89
BstXI CCANNNNNNTGG 2 cut(s) 13, 447
BstYI RGATCY 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 22
BsuRI GGCC 2 cut(s) 310, 404
BsuTUI ATCGAT 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 450, 537
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 402
ClaI ATCGAT 1 cut(s) 22
CviAII CATG 1 cut(s) 209
DdeI CTNAG 1 cut(s) 384
DpnI GATC 4 cut(s) 21, 25, 91, 195
DpnII GATC 4 cut(s) 19, 23, 89, 193
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco31I GGTCTC 2 cut(s) 114, 382
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 2 cut(s) 49, 151
Eco91I GGTNACC 1 cut(s) 42
EcoO65I GGTNACC 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 5, 439
FaeI CATG 1 cut(s) 212
FaiI YATR 4 cut(s) 95, 210, 294, 477
FatI CATG 1 cut(s) 208
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 5 cut(s) 81, 252, 267, 276, 380
FokI GGATG 2 cut(s) 457, 544
Fsp4HI GCNGC 5 cut(s) 81, 252, 267, 276, 380
FspBI CTAG 2 cut(s) 87, 333
GluI GCNGC 5 cut(s) 81, 252, 267, 276, 380
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 2 cut(s) 102, 267
HaeIII GGCC 2 cut(s) 310, 404
Hin1II CATG 1 cut(s) 212
HinfI GANTC 3 cut(s) 215, 469, 551
HphI GGTGA 2 cut(s) 36, 188
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 5 cut(s) 193, 235, 387, 457, 556
Hpy188III TCNNGA 4 cut(s) 51, 87, 119, 153
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 4 cut(s) 150, 331, 337, 510
HpyCH4III ACNGT 2 cut(s) 74, 200
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 272, 275, 520
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 4 cut(s) 19, 23, 89, 193
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 8 cut(s) 19, 84, 132, 231, 285, 426, 453, 469
Lsp1109I GCAGC 4 cut(s) 67, 238, 287, 366
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 87, 333
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 42
MalI GATC 4 cut(s) 21, 25, 91, 195
MboI GATC 4 cut(s) 19, 23, 89, 193
MboII GAAGA 5 cut(s) 29, 359, 416, 502, 514
MflI RGATCY 1 cut(s) 89
MluCI AATT 3 cut(s) 10, 239, 315
MnlI CCTC 6 cut(s) 58, 123, 126, 232, 393, 472
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 2 cut(s) 29, 278
MspR9I CCNGG 2 cut(s) 7, 441
MvaI CCWGG 2 cut(s) 7, 441
MwoI GCNNNNNNNGC 4 cut(s) 251, 272, 275, 520
NdeII GATC 4 cut(s) 19, 23, 89, 193
NlaIII CATG 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 42
OliI CACNNNNGTG 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 49
PasI CCCWGGG 1 cut(s) 440
PfeI GAWTC 3 cut(s) 215, 469, 551
PkrI GCNGC 5 cut(s) 82, 253, 268, 277, 381
Ppu21I YACGTR 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 5, 439
PspEI GGTNACC 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 5, 439
PspPI GGNCC 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 5 cut(s) 81, 252, 267, 276, 380
Sau3AI GATC 4 cut(s) 19, 23, 89, 193
Sau96I GGNCC 1 cut(s) 402
ScrFI CCNGG 2 cut(s) 7, 441
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 3 cut(s) 10, 239, 315
SsiI CCGC 2 cut(s) 27, 267
SspMI CTAG 2 cut(s) 87, 333
StyD4I CCNGG 2 cut(s) 5, 439
TaaI ACNGT 2 cut(s) 74, 200
TaiI ACGT 1 cut(s) 324
TaqI TCGA 3 cut(s) 22, 50, 213
TasI AATT 3 cut(s) 10, 239, 315
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 3 cut(s) 215, 469, 551
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 4 cut(s) 80, 251, 275, 379
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 309, 380
TspRI CASTG 1 cut(s) 64
XapI RAATTY 2 cut(s) 10, 315
XbaI TCTAGA 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 49
XspI CTAG 2 cut(s) 87, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.