Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006362

Physical Location & Seq

Genomic Coordinates Reverse (-)

24416027 .. 24418582

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCGCCGCCTCCTCCTCCGCCGCCCCTTCCGTCTTCTTCCTCCGCTACGTCGTCGTTTTCCAACGGCAGCAGACTGAGAAAGGAAGGCTCCGGGTCGCTTCCTAGCAGGAATTTGGTGGATCGATCTGCTACCGTTAATGGGTCACCATCGAGAAACCCTGCTGGTGGCAGCAACGGCCGAGCTGCTTCCAGATCCACTGCGGGGAAACGATCTCCTCCGCCGGAGAAAAATGAGAGAAAGGTGCCAGCTTGCTCAGGCAGGTCATCAGCAGCGGCCAAAGATGACAACAAGCCAAATGGAGCTCAAGCTGATCGTGGGAATCATGCTGATTCTAGTTTGTTGCAATCGGATCAGTTGGCCGTCGGGGCAGGGGCGGATAATTCTTCCGCCGCAGCTGCAACGGCTTCCGCGGCTGCAGCGGAGAAGGTGAACTACGAAGTGGTGGAGTGGCCGAGAATTTATATTGCTCTGTCGAGGAAGGAGAAGGAAGATGATTTCCTTGCAATGAAAGGCACAAAGCTCCCTCAGAGGCCCAAAAAAAGGGCCAAAAATGTTGACAGAACTCTGCAGTATTGTTTTCCAGGTATGTGGCTGTCTGACTTAACAAGGAATCGATATGAGGTCAGGGAGAAGAAATGTGTGAAGAAGCAAAAGCGAAGGGGACTCAAGGGAATGGACAGCGTCGACAGTGATTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

235

Amino Acids

24.98

Weight (kDa)

10.0

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20300 AT4G20300
fragaria_vesca	FvH4_3g13430 FvH4_3g13430 FvH4_3g13430 FvH4_3g13430 FvH4_3g13430
malus_domestica	MD05G1241700.v1.1 MD10G1223600.v1.1
prunus_persica	Prupe.4G121700_v2.0.a1
pyrus_communis	pycom05g21840 pycom10g18750 pycom13g29030
rosa_chinensis	RchiOBHm_Chr5g0022171
rosa_laevigata	RLG00000032649
rosa_multiflora	Rmu_co8407311.1_g000001 Rmu_sc0006966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00056770
rosa_rugosa	Rorug05G0072000 Rorug05G0072000 Rorug05G0072100 Rorug05G0072200
rosa_samantha	Rh5AG159900 Rh5BG159300 Rh5CG173600 Rh5DG159400
rosa_wichuraiana	Rw5G014270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	1 cut(s)	413
AclWI	GGATC	3 cut(s)	129, 189, 360
AcoI	YGGCCR	4 cut(s)	178, 276, 360, 452
AcsI	RAATTY	2 cut(s)	112, 459
AfiI	CCNNNNNNNGG	4 cut(s)	141, 167, 204, 543
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	6 cut(s)	185, 251, 305, 311, 398, 523
AluI	AGCT	6 cut(s)	185, 251, 305, 311, 398, 523
Alw21I	GWGCWC	1 cut(s)	307
AlwI	GGATC	3 cut(s)	129, 189, 360
AoxI	GGCC	6 cut(s)	178, 276, 360, 452, 533, 546
ApeKI	GCWGC	8 cut(s)	69, 171, 185, 272, 395, 398, 416, 419
ApoI	RAATTY	2 cut(s)	112, 459
AspS9I	GGNCC	2 cut(s)	534, 546
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	138, 442
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	307
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	8 cut(s)	81, 172, 183, 284, 385, 403, 407, 431
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	4 cut(s)	82, 193, 347, 420
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	2 cut(s)	105, 336
BfmI	CTRYAG	2 cut(s)	417, 569
BfuAI	ACCTGC	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	94, 585
BmgT120I	GGNCC	2 cut(s)	534, 546
BmiI	GGNNCC	2 cut(s)	91, 246
BmrFI	CCNGG	2 cut(s)	94, 585
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	291, 653
BpuMI	CCSGG	1 cut(s)	94
Bsa29I	ATCGAT	2 cut(s)	124, 616
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 167, 204, 543
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	585
BseCI	ATCGAT	2 cut(s)	124, 616
BseDI	CCNNGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	141, 167, 204, 543
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	3 cut(s)	68, 270, 542
BseRI	GAGGAG	2 cut(s)	6, 207
BseX3I	CGGCCG	1 cut(s)	178
BseXI	GCAGC	8 cut(s)	81, 172, 183, 284, 385, 403, 407, 431
Bsh1236I	CGCG	1 cut(s)	413
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	6 cut(s)	180, 278, 362, 454, 535, 548
BshNI	GGYRCC	1 cut(s)	244
BshVI	ATCGAT	2 cut(s)	124, 616
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	93, 224
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	4 cut(s)	141, 167, 204, 543
BsmFI	GGGAC	1 cut(s)	678
BsnI	GGCC	6 cut(s)	180, 278, 362, 454, 535, 548
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
BspANI	GGCC	6 cut(s)	180, 278, 362, 454, 535, 548
BspCNI	CTCAG	3 cut(s)	69, 269, 541
BspDI	ATCGAT	2 cut(s)	124, 616
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	2 cut(s)	91, 246
BspMAI	CTGCAG	2 cut(s)	421, 573
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	129, 189, 360
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	136, 692
BstC8I	GCNNGC	2 cut(s)	249, 253
BstDEI	CTNAG	3 cut(s)	77, 256, 528
BstDSI	CCRYGG	1 cut(s)	411
BstEII	GGTNACC	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	6 cut(s)	124, 128, 197, 215, 316, 355
BstMBI	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 368, 398, 404, 413, 419
BstNI	CCWGG	1 cut(s)	585
BstPI	GGTNACC	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	92, 583
BstSFI	CTRYAG	2 cut(s)	417, 569
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	8 cut(s)	81, 172, 183, 284, 385, 403, 407, 431
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	194
BstZI	CGGCCG	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	124, 616
BsuRI	GGCC	6 cut(s)	180, 278, 362, 454, 535, 548
BsuTUI	ATCGAT	2 cut(s)	124, 616
BtgI	CCRYGG	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 697
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	249, 253
Cfr13I	GGNCC	2 cut(s)	534, 546
Cfr42I	CCGCGG	1 cut(s)	414
ClaI	ATCGAT	2 cut(s)	124, 616
CseI	GACGC	1 cut(s)	673
CviAII	CATG	1 cut(s)	326
DdeI	CTNAG	3 cut(s)	77, 256, 528
DpnI	GATC	6 cut(s)	123, 127, 196, 214, 315, 354
DpnII	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
EaeI	YGGCCR	4 cut(s)	178, 276, 360, 452
EagI	CGGCCG	1 cut(s)	178
EciI	GGCGGA	4 cut(s)	9, 210, 379, 392
Ecl136II	GAGCTC	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	307
Eco52I	CGGCCG	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	1 cut(s)	329
FaiI	YATR	4 cut(s)	327, 465, 590, 621
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	1 cut(s)	325
FauI	CCCGC	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	687
FriOI	GRGCYC	1 cut(s)	307
FspBI	CTAG	2 cut(s)	105, 336
HaeIII	GGCC	6 cut(s)	180, 278, 362, 454, 535, 548
HapII	CCGG	2 cut(s)	93, 224
HgaI	GACGC	1 cut(s)	673
Hin1II	CATG	1 cut(s)	329
HincII	GTYRAC	2 cut(s)	559, 688
HindII	GTYRAC	2 cut(s)	559, 688
HinfI	GANTC	5 cut(s)	322, 332, 613, 666, 695
HpaII	CCGG	2 cut(s)	93, 224
HphI	GGTGA	2 cut(s)	138, 442
Hpy166II	GTNNAC	3 cut(s)	433, 559, 688
Hpy188I	TCNGA	4 cut(s)	352, 531, 601, 700
Hpy188III	TCNNGA	2 cut(s)	153, 192
Hpy8I	GTNNAC	3 cut(s)	433, 559, 688
Hpy99I	CGWCG	4 cut(s)	55, 58, 368, 689
HpyAV	CCTTC	6 cut(s)	38, 80, 421, 475, 481, 654
HpyCH4III	ACNGT	2 cut(s)	136, 692
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	5 cut(s)	346, 401, 419, 506, 571
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 368, 398, 404, 413, 419
HpyF3I	CTNAG	3 cut(s)	77, 256, 528
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	329
KspI	CCGCGG	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
LmnI	GCTCC	3 cut(s)	95, 302, 528
Lsp1109I	GCAGC	8 cut(s)	81, 172, 183, 284, 385, 403, 407, 431
MaeI	CTAG	2 cut(s)	105, 336
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	6 cut(s)	123, 127, 196, 214, 315, 354
MboI	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
MboII	GAAGA	6 cut(s)	27, 30, 378, 503, 646, 658
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	3 cut(s)	112, 382, 459
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	21, 24, 27, 52, 228, 471, 525, 537, 616
MseI	TTAA	2 cut(s)	138, 605
MspA1I	CMGCKG	4 cut(s)	275, 398, 413, 422
MspI	CCGG	2 cut(s)	93, 224
MspR9I	CCNGG	2 cut(s)	94, 585
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	6 cut(s)	177, 368, 398, 404, 413, 419
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	2 cut(s)	91, 246
NmeAIII	GCCGAG	2 cut(s)	206, 480
NmuCI	GTSAC	1 cut(s)	144
PfeI	GAWTC	4 cut(s)	322, 332, 613, 695
PflFI	GACNNNGTC	1 cut(s)	683
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	91, 246
PspPI	GGNCC	2 cut(s)	534, 546
PstI	CTGCAG	2 cut(s)	421, 573
PsuI	RGATCY	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	307
SacII	CCGCGG	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	138, 605
Sau3AI	GATC	6 cut(s)	121, 125, 194, 212, 313, 352
Sau96I	GGNCC	2 cut(s)	534, 546
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	2 cut(s)	94, 585
SduI	GDGCHC	1 cut(s)	307
SfcI	CTRYAG	2 cut(s)	417, 569
Sfr303I	CCGCGG	1 cut(s)	414
SgrBI	CCGCGG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	306, 668
SmoI	CTYRAG	2 cut(s)	306, 668
Sse9I	AATT	3 cut(s)	112, 382, 459
SspMI	CTAG	2 cut(s)	105, 336
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	92, 583
TaaI	ACNGT	2 cut(s)	136, 692
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	5 cut(s)	124, 152, 476, 616, 687
TasI	AATT	3 cut(s)	112, 382, 459
TauI	GCSGC	6 cut(s)	7, 10, 25, 278, 395, 416
TfiI	GAWTC	4 cut(s)	322, 332, 613, 695
Tru1I	TTAA	2 cut(s)	138, 605
Tru9I	TTAA	2 cut(s)	138, 605
TscAI	CASTG	2 cut(s)	205, 697
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	8 cut(s)	69, 171, 185, 272, 395, 398, 416, 419
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	205, 697
Tth111I	GACNNNGTC	1 cut(s)	683
XapI	RAATTY	2 cut(s)	112, 459
XmiI	GTMKAC	1 cut(s)	687
XspI	CTAG	2 cut(s)	105, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.