Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006362

Physical Location & Seq

Genomic Coordinates Reverse (-)

22029906 .. 22032793

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18750.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATGATGAGGTACCTGAGAGTGAGCCCAGATTGCGTTCCTCTGAGCAATGGCAAGAAACCAACCGTGAGAACCATATCCAAAGACGACGGGATTACAGACACCGTGACAACAAACAGTGTAGTCACATCTCTAGAACCCACCAAACCCTTCAGATTCCGATCCCAACCCACGCCTCAAGACCCTACACAATCCCAATTCGGAGCCCGACCCACTTCCCCAGACGGCGAAATCCACCACCAGACCCAGCAGCGGCTGGACAAGAGTCCCAGCCGGACTCCCAGCCCAATCCGCGGCGCCGGCGACGTGCTGCTGCAGTGGGGCCAGAGAAAGAGGTCGAGAGTCTCCAGGACTGAGATCCGAGCTGTCACCGATGAGTCCTCTTCGTCAGCCCAAGCGAGGCAGGCTTCAAAGCTGCAGAGGAGAGACAAGTCCATGCAGCCGCCGCCGCCGCCCCTTCCATCTTCTTCCTCCACGACGTCGTCGTTTTCTAATGGCGGCAGACCGAGAAAGGAAGCCTCCGGGTCGCTTCCTAGCAGGAATTTGGAAGATCGATCTGCCCGCGTTAATAGGTCGCCATCGAGAAACCCTACTGGTGGCAGCAACGGCCGAGCCGCTTCTAGATCTACGGCGGGGAAAAGATCTCCTCCGCCGGAGAAAAATGAGAGAAAGGTGCCAGCTTGCTTGGGCAGGTCATCAGCAGCAGCCAAAGATGACAGCAAGCCAAATGGAGCTCAAGCTGAACGTGTGAATCATGCTGATTCTACTTTGTTGCAATCGGATCAATTAGCCACTGGTTCGCGAGCGGCGGCTAATTCCGCTGCCGCTGCGGCAGCGGAGAAGGTGAACTACGAAGTGGTGGAGTGGCCGAGAATTTATATTGCTCTGTCGAGGAAGGAGAAGGAAGATGATTTCCTTGCAATGAAAGGCACGAAGCTCCCTCAGAGACCCAAAAAAAGAGCCAAAAATGTTGATAGAACTCTGCAGTATTGTTTTCCAGGGATGTGGCTGTCTGACTTGACAAGGAATCGATATGAGGTCAGGGAGAAGAAATGTGTGAAGAAGGTAATATGCTGCTCTTTCCTGCTGTTTTCCTCTTTTGTCTTTTTCCTCAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

374

Amino Acids

41.13

Weight (kDa)

10.41

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20300 AT4G20300
fragaria_vesca	FvH4_3g13430 FvH4_3g13430 FvH4_3g13430 FvH4_3g13430 FvH4_3g13430
malus_domestica	MD05G1241700.v1.1 MD10G1223600.v1.1
prunus_persica	Prupe.4G121700_v2.0.a1
pyrus_communis	pycom05g21840 pycom10g18750 pycom13g29030
rosa_chinensis	RchiOBHm_Chr5g0022171
rosa_laevigata	RLG00000032649
rosa_multiflora	Rmu_co8407311.1_g000001 Rmu_sc0006966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00056770
rosa_rugosa	Rorug05G0072000 Rorug05G0072000 Rorug05G0072100 Rorug05G0072200
rosa_samantha	Rh5AG159900 Rh5BG159300 Rh5CG173600 Rh5DG159400
rosa_wichuraiana	Rw5G014270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	681
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	3 cut(s)	12, 296, 673
AccBSI	CCGCTC	1 cut(s)	806
AccII	CGCG	3 cut(s)	294, 564, 802
AclWI	GGATC	3 cut(s)	156, 352, 789
AcoI	YGGCCR	2 cut(s)	607, 866
AcsI	RAATTY	2 cut(s)	541, 873
AcuI	CTGAAG	1 cut(s)	136
AcyI	GRCGYC	2 cut(s)	297, 479
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	4 cut(s)	252, 293, 399, 596
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	1 cut(s)	411
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	347, 997
AluBI	AGCT	6 cut(s)	365, 415, 680, 734, 740, 937
AluI	AGCT	6 cut(s)	365, 415, 680, 734, 740, 937
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	3 cut(s)	349, 420, 940
AlwI	GGATC	3 cut(s)	156, 352, 789
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	3 cut(s)	322, 607, 866
ApoI	RAATTY	2 cut(s)	541, 873
Asp718I	GGTACC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	361, 856
BanI	GGYRCC	3 cut(s)	12, 296, 673
BanII	GRGCYC	3 cut(s)	29, 208, 736
BarI	GAAGNNNNNNTAC	2 cut(s)	833, 865
Bbv12I	GWGCWC	1 cut(s)	736
BccI	CCATC	2 cut(s)	469, 586
BceAI	ACGGC	3 cut(s)	241, 622, 645
BciT130I	CCWGG	2 cut(s)	349, 999
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	349, 420, 940
BfaI	CTAG	3 cut(s)	134, 534, 621
BfmI	CTRYAG	3 cut(s)	314, 416, 983
BfoI	RGCGCY	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	681
BglI	GCCNNNNNGGC	1 cut(s)	830
BglII	AGATCT	2 cut(s)	623, 641
Bme1390I	CCNGG	3 cut(s)	349, 523, 999
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	5 cut(s)	14, 205, 298, 323, 675
BmrFI	CCNGG	3 cut(s)	349, 523, 999
BoxI	GACNNNNGTC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	162, 720
BpuMI	CCSGG	1 cut(s)	523
Bsa29I	ATCGAT	2 cut(s)	553, 1030
BsaBI	GATNNNNATC	1 cut(s)	160
BsaHI	GRCGYC	2 cut(s)	297, 479
BsaI	GGTCTC	1 cut(s)	940
BsaJI	CCNNGG	2 cut(s)	292, 998
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 293, 399, 596
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	598, 799
Bse3DI	GCAATG	2 cut(s)	55, 927
Bse8I	GATNNNNATC	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	349, 999
BseCI	ATCGAT	2 cut(s)	553, 1030
BseDI	CCNNGG	2 cut(s)	292, 998
BseGI	GGATG	1 cut(s)	1008
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	4 cut(s)	252, 293, 399, 596
BseMI	GCAATG	2 cut(s)	55, 927
BseMII	CTCAG	4 cut(s)	8, 35, 345, 956
BseNI	ACTGG	2 cut(s)	598, 799
BseRI	GAGGAG	2 cut(s)	436, 636
BseX3I	CGGCCG	1 cut(s)	607
BseYI	CCCAGC	3 cut(s)	246, 269, 281
Bsh1236I	CGCG	3 cut(s)	294, 564, 802
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	3 cut(s)	324, 609, 868
BshNI	GGYRCC	3 cut(s)	12, 296, 673
BshVI	ATCGAT	2 cut(s)	553, 1030
BsiEI	CGRYCG	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	736
BsiSI	CCGG	4 cut(s)	274, 300, 522, 653
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	4 cut(s)	252, 293, 399, 596
BsmAI	GTCTC	3 cut(s)	349, 420, 940
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	324, 609, 868
Bso31I	GGTCTC	1 cut(s)	940
Bsp1286I	GDGCHC	3 cut(s)	29, 208, 736
Bsp143I	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
Bsp68I	TCGCGA	1 cut(s)	802
BspANI	GGCC	3 cut(s)	324, 609, 868
BspCNI	CTCAG	4 cut(s)	9, 36, 346, 955
BspDI	ATCGAT	2 cut(s)	553, 1030
BspFNI	CGCG	3 cut(s)	294, 564, 802
BspLI	GGNNCC	5 cut(s)	14, 205, 298, 323, 675
BspMAI	CTGCAG	3 cut(s)	318, 420, 987
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	3 cut(s)	156, 352, 789
BspT107I	GGYRCC	3 cut(s)	12, 296, 673
BspTNI	GGTCTC	1 cut(s)	940
BsrBI	CCGCTC	1 cut(s)	806
BsrDI	GCAATG	2 cut(s)	55, 927
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	598, 799
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	292, 998
BssMI	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
BssNI	GRCGYC	2 cut(s)	297, 479
Bst2UI	CCWGG	2 cut(s)	349, 999
Bst4CI	ACNGT	3 cut(s)	67, 106, 119
Bst6I	CTCTTC	1 cut(s)	388
BstACI	GRCGYC	2 cut(s)	297, 479
BstC8I	GCNNGC	7 cut(s)	301, 405, 562, 678, 682, 722, 804
BstDEI	CTNAG	5 cut(s)	17, 44, 354, 942, 1112
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	1008
BstFNI	CGCG	3 cut(s)	294, 564, 802
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	7 cut(s)	164, 360, 553, 557, 626, 644, 784
BstMAI	GTCTC	3 cut(s)	349, 420, 940
BstMBI	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
BstMCI	CGRYCG	1 cut(s)	610
BstNI	CCWGG	2 cut(s)	349, 999
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	347, 521, 997
BstSFI	CTRYAG	3 cut(s)	314, 416, 983
BstUI	CGCG	3 cut(s)	294, 564, 802
BstX2I	RGATCY	3 cut(s)	357, 623, 641
BstXI	CCANNNNNNTGG	1 cut(s)	1005
BstYI	RGATCY	3 cut(s)	357, 623, 641
BstZI	CGGCCG	1 cut(s)	607
Bsu15I	ATCGAT	2 cut(s)	553, 1030
BsuRI	GGCC	3 cut(s)	324, 609, 868
BsuTUI	ATCGAT	2 cut(s)	553, 1030
BtgI	CCRYGG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	1008
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	3 cut(s)	124, 323, 792
BtuMI	TCGCGA	1 cut(s)	802
BveI	ACCTGC	1 cut(s)	681
Cac8I	GCNNGC	7 cut(s)	301, 405, 562, 678, 682, 722, 804
CaiI	CAGNNNCTG	1 cut(s)	256
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	322
Cfr42I	CCGCGG	1 cut(s)	295
ClaI	ATCGAT	2 cut(s)	553, 1030
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	436, 755
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	5 cut(s)	17, 44, 354, 942, 1112
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	7 cut(s)	163, 359, 552, 556, 625, 643, 783
DpnII	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
EaeI	YGGCCR	2 cut(s)	607, 866
EagI	CGGCCG	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
EciI	GGCGGA	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	734
EclXI	CGGCCG	1 cut(s)	607
Eco24I	GRGCYC	3 cut(s)	29, 208, 736
Eco31I	GGTCTC	1 cut(s)	940
Eco52I	CGGCCG	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	734
Eco57I	CTGAAG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	347, 997
EcoT38I	GRGCYC	3 cut(s)	29, 208, 736
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
FaeI	CATG	2 cut(s)	439, 758
FaiI	YATR	6 cut(s)	77, 437, 756, 879, 1035, 1072
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	2 cut(s)	435, 754
FauI	CCCGC	2 cut(s)	569, 625
FokI	GGATG	1 cut(s)	1015
FriOI	GRGCYC	3 cut(s)	29, 208, 736
FspBI	CTAG	3 cut(s)	134, 534, 621
GlaI	GCGC	1 cut(s)	298
GsaI	CCCAGC	3 cut(s)	250, 273, 285
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	324, 609, 868
HapII	CCGG	4 cut(s)	274, 300, 522, 653
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	2 cut(s)	297, 479
Hin1II	CATG	2 cut(s)	439, 758
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	8 cut(s)	156, 265, 277, 342, 377, 751, 761, 1027
HpaII	CCGG	4 cut(s)	274, 300, 522, 653
HphI	GGTGA	2 cut(s)	361, 856
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	8 cut(s)	45, 155, 161, 203, 362, 781, 945, 1015
Hpy188III	TCNNGA	6 cut(s)	134, 179, 339, 582, 621, 801
Hpy8I	GTNNAC	1 cut(s)	847
Hpy99I	CGWCG	5 cut(s)	92, 308, 481, 484, 487
HpyAV	CCTTC	6 cut(s)	160, 467, 835, 889, 895, 1057
HpyCH4III	ACNGT	3 cut(s)	67, 106, 119
HpyCH4IV	ACGT	3 cut(s)	306, 479, 745
HpyCH4V	TGCA	6 cut(s)	316, 418, 439, 775, 920, 985
HpyF3I	CTNAG	5 cut(s)	17, 44, 354, 942, 1112
HpySE526I	ACGT	3 cut(s)	306, 479, 745
Hsp92I	GRCGYC	2 cut(s)	297, 479
Hsp92II	CATG	2 cut(s)	439, 758
HspAI	GCGC	1 cut(s)	297
KasI	GGCGCC	1 cut(s)	296
KpnI	GGTACC	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
KspI	CCGCGG	1 cut(s)	295
Kzo9I	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
LmnI	GCTCC	3 cut(s)	203, 731, 942
MaeI	CTAG	3 cut(s)	134, 534, 621
MaeII	ACGT	3 cut(s)	306, 479, 745
MaeIII	GTNAC	3 cut(s)	106, 124, 367
MalI	GATC	7 cut(s)	163, 359, 552, 556, 625, 643, 783
MbiI	CCGCTC	1 cut(s)	806
MboI	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
MboII	GAAGA	7 cut(s)	375, 456, 459, 560, 917, 1060, 1072
MflI	RGATCY	3 cut(s)	357, 623, 641
MhlI	GDGCHC	3 cut(s)	29, 208, 736
MluCI	AATT	5 cut(s)	197, 541, 785, 814, 873
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	4 cut(s)	271, 274, 351, 386
MreI	CGCCGGCG	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	299
MseI	TTAA	2 cut(s)	567, 1120
MspA1I	CMGCKG	5 cut(s)	253, 294, 821, 827, 836
MspI	CCGG	4 cut(s)	274, 300, 522, 653
MspR9I	CCNGG	3 cut(s)	349, 523, 999
MvaI	CCWGG	2 cut(s)	349, 999
MvnI	CGCG	3 cut(s)	294, 564, 802
NaeI	GCCGGC	1 cut(s)	301
NarI	GGCGCC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	439, 758
NlaIV	GGNNCC	5 cut(s)	14, 205, 298, 323, 675
NmeAIII	GCCGAG	2 cut(s)	635, 894
NmuCI	GTSAC	3 cut(s)	106, 124, 367
NruI	TCGCGA	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PdiI	GCCGGC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	156, 751, 761, 1027
PflFI	GACNNNGTC	1 cut(s)	481
PfoI	TCCNGGA	1 cut(s)	347
PleI	GAGTC	4 cut(s)	271, 273, 350, 385
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	4 cut(s)	271, 273, 350, 385
PshAI	GACNNNNGTC	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	347, 997
PspFI	CCCAGC	3 cut(s)	246, 269, 281
PspGI	CCWGG	2 cut(s)	347, 997
PspN4I	GGNNCC	5 cut(s)	14, 205, 298, 323, 675
PspPI	GGNCC	1 cut(s)	322
PstI	CTGCAG	3 cut(s)	318, 420, 987
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	3 cut(s)	357, 623, 641
PsyI	GACNNNGTC	1 cut(s)	481
RruI	TCGCGA	1 cut(s)	802
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	736
SacII	CCGCGG	1 cut(s)	295
SaqAI	TTAA	2 cut(s)	567, 1120
Sau3AI	GATC	7 cut(s)	161, 357, 550, 554, 623, 641, 781
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	4 cut(s)	271, 274, 351, 386
ScrFI	CCNGG	3 cut(s)	349, 523, 999
SduI	GDGCHC	3 cut(s)	29, 208, 736
SfcI	CTRYAG	3 cut(s)	314, 416, 983
SfoI	GGCGCC	1 cut(s)	298
Sfr303I	CCGCGG	1 cut(s)	295
SgrAI	CRCCGGYG	1 cut(s)	299
SgrBI	CCGCGG	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	177, 735
SmoI	CTYRAG	2 cut(s)	177, 735
Sse9I	AATT	5 cut(s)	197, 541, 785, 814, 873
SspDI	GGCGCC	1 cut(s)	296
SspMI	CTAG	3 cut(s)	134, 534, 621
SstI	GAGCTC	1 cut(s)	736
StyD4I	CCNGG	3 cut(s)	347, 521, 997
TaaI	ACNGT	3 cut(s)	67, 106, 119
TaiI	ACGT	3 cut(s)	309, 482, 748
TaqI	TCGA	5 cut(s)	338, 553, 581, 890, 1030
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	5 cut(s)	197, 541, 785, 814, 873
TfiI	GAWTC	4 cut(s)	156, 751, 761, 1027
Tru1I	TTAA	2 cut(s)	567, 1120
Tru9I	TTAA	2 cut(s)	567, 1120
TscAI	CASTG	3 cut(s)	124, 323, 799
TseFI	GTSAC	3 cut(s)	106, 124, 367
Tsp45I	GTSAC	3 cut(s)	106, 124, 367
TspDTI	ATGAA	1 cut(s)	938
TspRI	CASTG	3 cut(s)	124, 323, 799
Tth111I	GACNNNGTC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	541, 873
XbaI	TCTAGA	2 cut(s)	133, 620
XspI	CTAG	3 cut(s)	134, 534, 621
ZraI	GACGTC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.