Rorug05G0072000

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006362
Physical Location & Seq
Reverse (-)
6183844 .. 6186635
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0072000.1

Sequence Viewer

Length: 978 bp
ATGAAAGTAGTGGTCATGGCTATGAAATATTGGGCTCAAACAACAAAACCTCACCGCCAACTCTCAGTTGATTACTATGCGAAATCATGTCCCCAACTCGAAAAACTCATCGGGTCCATCACATCTCAACAGTTCAAAGAAGCACCAGTTTCTGGTCCAGCAACCATTCGCCTTTTCTTCCATGACTGCTTTGTAGAAGGCTGTGATGCGTCCATAACCATAAAGTCACAGCAGGGGAGCAAGGTGTTGGCAGAGAAGGATGCAACAGATAATAAGGACCTGAGGGAGGAAGGCTTTGAAAGTGTGAGGAAAGCAAAGGCTTTGGTAGAAAGCAAGTGTCCTGGTGTTGTGTCTTGTGCTGACATACTTGCAATTGAAGCCAGAGATTATGTCCACTTGGCAGGGGGTCCATACTATCAAGTTAAGAAAGGAAGGTGGGATGGAAGAATATCAATGGCCTCAAGAGTGGCTTCCAATATTCCCCAAGCAAATTTCACAATGAATCAGCTACTCAAACTCTTCAATTCAAAAGGATTAACACTTGAAGACCTTGTTGTTCTTTCTGGTGCTCATACATTCGGGTATGCACATTGCCAGAACTTCGTAAGCAGGCTCTATGACTACAGCGGCTCGAAGCAGCCTGACCCGGTTATGGACCCGAGGCTCCTAAGGGCGCTAAGAATGTCATGCCCACATTATGGTGGAAATCCTGACATTGTTGCACCATTTGATGTCACTACTCCCTTTGTGTTTGATCATGCCTATTATGGTAATTTAGTGGCTAAGTTGGGCTTGCTAGCTTCAGACCAAGCTTTAGCTTTGGACCCAAGAACCAAACCCATTGTTCAAGCATTTGCAAAAGACAAAGCGAAGTTTTTCCAAGCTTTTGGGGTGGCTATGGAGAAAATGGGCTCAATAGGTGTGAAGAGGGGAAGAAAACATGGGGAGAGAAGAAAAGACTGTAGTATACATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

325

Amino Acids

36.05

Weight (kDa)

9.25

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 288 1.5e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 152, 698
AccI GTMKAC 1 cut(s) 967
AciI CCGC 2 cut(s) 55, 627
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 786
AfiI CCNNNNNNNGG 4 cut(s) 152, 286, 652, 698
AgsI TTSAA 7 cut(s) 136, 299, 377, 523, 528, 545, 848
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 5 cut(s) 508, 800, 812, 818, 884
AluI AGCT 5 cut(s) 508, 800, 812, 818, 884
Alw21I GWGCWC 1 cut(s) 571
AlwNI CAGNNNCTG 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 658
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 875
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 6 cut(s) 114, 155, 277, 407, 655, 823
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 796
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 6 cut(s) 114, 155, 277, 407, 655, 823
AxyI CCTNAGG 2 cut(s) 281, 668
BanII GRGCYC 2 cut(s) 37, 914
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 1 cut(s) 649
BccI CCATC 2 cut(s) 125, 434
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 647
BfaI CTAG 1 cut(s) 797
BfmI CTRYAG 2 cut(s) 622, 961
BfoI RGCGCY 1 cut(s) 677
BisI GCNGC 2 cut(s) 628, 638
BlsI GCNGC 2 cut(s) 629, 639
Bme1390I CCNGG 2 cut(s) 342, 647
Bme18I GGWCC 6 cut(s) 114, 155, 277, 407, 655, 823
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 6 cut(s) 114, 155, 277, 407, 655, 823
BmiI GGNNCC 5 cut(s) 115, 408, 657, 665, 825
BmrFI CCNGG 2 cut(s) 342, 647
BmsI GCATC 2 cut(s) 196, 250
BmtI GCTAGC 1 cut(s) 800
BpiI GAAGAC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 659
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 286, 652, 698
Bse1I ACTGG 1 cut(s) 146
Bse21I CCTNAGG 2 cut(s) 281, 668
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 659
BseGI GGATG 2 cut(s) 265, 445
BseLI CCNNNNNNNGG 4 cut(s) 152, 286, 652, 698
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 78, 272
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 649
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 1 cut(s) 647
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 4 cut(s) 152, 286, 652, 698
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 658
Bsp1286I GDGCHC 3 cut(s) 37, 571, 914
Bsp143I GATC 1 cut(s) 754
BspACI CCGC 2 cut(s) 55, 627
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 2 cut(s) 77, 273
BspLI GGNNCC 5 cut(s) 115, 408, 657, 665, 825
BspOI GCTAGC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 659
BssMI GATC 1 cut(s) 754
BssNAI GTATAC 1 cut(s) 968
Bst1107I GTATAC 1 cut(s) 968
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 132, 962
Bst6I CTCTTC 2 cut(s) 524, 920
BstC8I GCNNGC 3 cut(s) 611, 794, 798
BstDEI CTNAG 5 cut(s) 64, 281, 668, 677, 783
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 265, 445
BstH2I RGCGCY 1 cut(s) 677
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 1 cut(s) 757
BstMBI GATC 1 cut(s) 754
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 340, 645
BstSFI CTRYAG 2 cut(s) 622, 961
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 552
BstXI CCANNNNNNTGG 1 cut(s) 887
BstZ17I GTATAC 1 cut(s) 968
Bsu36I CCTNAGG 2 cut(s) 281, 668
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 265, 445
Cac8I GCNNGC 3 cut(s) 611, 794, 798
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 676
Cfr13I GGNCC 6 cut(s) 114, 155, 277, 407, 655, 823
CseI GACGC 1 cut(s) 198
CviAII CATG 6 cut(s) 16, 87, 182, 687, 758, 941
DdeI CTNAG 5 cut(s) 64, 281, 668, 677, 783
DpnI GATC 1 cut(s) 756
DpnII GATC 1 cut(s) 754
Eam1104I CTCTTC 2 cut(s) 524, 920
EarI CTCTTC 2 cut(s) 524, 920
Eco24I GRGCYC 2 cut(s) 37, 914
Eco47I GGWCC 6 cut(s) 114, 155, 277, 407, 655, 823
Eco57I CTGAAG 1 cut(s) 786
Eco81I CCTNAGG 2 cut(s) 281, 668
Eco88I CYCGRG 1 cut(s) 658
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 2 cut(s) 37, 914
FaeI CATG 6 cut(s) 19, 90, 185, 690, 761, 944
FalI AAGNNNNNCTT 4 cut(s) 454, 486, 776, 808
FaqI GGGAC 1 cut(s) 75
FatI CATG 6 cut(s) 15, 86, 181, 686, 757, 940
FauNDI CATATG 1 cut(s) 972
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 1 cut(s) 967
Fnu4HI GCNGC 2 cut(s) 628, 638
FokI GGATG 2 cut(s) 272, 452
FriOI GRGCYC 2 cut(s) 37, 914
Fsp4HI GCNGC 2 cut(s) 628, 638
FspBI CTAG 1 cut(s) 797
GlaI GCGC 1 cut(s) 675
GluI GCNGC 2 cut(s) 628, 638
HaeII RGCGCY 1 cut(s) 677
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 647
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 676
Hin1II CATG 6 cut(s) 19, 90, 185, 690, 761, 944
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HindIII AAGCTT 2 cut(s) 810, 882
HinfI GANTC 1 cut(s) 502
HpaII CCGG 1 cut(s) 647
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 394, 968
Hpy188I TCNGA 1 cut(s) 805
Hpy188III TCNNGA 2 cut(s) 462, 710
Hpy8I GTNNAC 2 cut(s) 394, 968
HpyAV CCTTC 4 cut(s) 191, 250, 284, 426
HpyCH4III ACNGT 2 cut(s) 132, 962
HpyCH4V TGCA 5 cut(s) 263, 371, 587, 722, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 5 cut(s) 64, 281, 668, 677, 783
Hsp92II CATG 6 cut(s) 19, 90, 185, 690, 761, 944
HspAI GCGC 1 cut(s) 674
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 1 cut(s) 754
LmnI GCTCC 2 cut(s) 237, 669
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 2 cut(s) 196, 250
MaeI CTAG 1 cut(s) 797
MaeIII GTNAC 2 cut(s) 225, 733
MalI GATC 1 cut(s) 756
MboI GATC 1 cut(s) 754
MboII GAAGA 7 cut(s) 169, 456, 511, 557, 937, 945, 963
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 3 cut(s) 37, 571, 914
MluCI AATT 4 cut(s) 372, 490, 523, 772
MnlI CCTC 7 cut(s) 60, 276, 280, 300, 469, 654, 921
MroXI GAANNNNTTC 1 cut(s) 875
MseI TTAA 2 cut(s) 423, 536
MslI CAYNNNNRTG 2 cut(s) 20, 699
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 2 cut(s) 342, 647
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 377
NciI CCSGG 1 cut(s) 647
NdeI CATATG 1 cut(s) 972
NdeII GATC 1 cut(s) 754
NheI GCTAGC 1 cut(s) 796
NlaIII CATG 6 cut(s) 19, 90, 185, 690, 761, 944
NlaIV GGNNCC 5 cut(s) 115, 408, 657, 665, 825
NmuCI GTSAC 2 cut(s) 225, 733
PdmI GAANNNNTTC 1 cut(s) 875
PfeI GAWTC 1 cut(s) 502
PflMI CCANNNNNTGG 2 cut(s) 152, 698
PkrI GCNGC 2 cut(s) 629, 639
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 5 cut(s) 115, 408, 657, 665, 825
PspPI GGNCC 6 cut(s) 114, 155, 277, 407, 655, 823
PspPPI RGGWCCY 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 152
RseI CAYNNNNRTG 2 cut(s) 20, 699
SaqAI TTAA 2 cut(s) 423, 536
SatI GCNGC 2 cut(s) 628, 638
Sau3AI GATC 1 cut(s) 754
Sau96I GGNCC 6 cut(s) 114, 155, 277, 407, 655, 823
ScrFI CCNGG 2 cut(s) 342, 647
SduI GDGCHC 3 cut(s) 37, 571, 914
SfaNI GCATC 2 cut(s) 196, 250
SfcI CTRYAG 2 cut(s) 622, 961
SinI GGWCC 6 cut(s) 114, 155, 277, 407, 655, 823
SmiMI CAYNNNNRTG 2 cut(s) 20, 699
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 4 cut(s) 372, 490, 523, 772
SsiI CCGC 2 cut(s) 55, 627
SspI AATATT 2 cut(s) 29, 478
SspMI CTAG 1 cut(s) 797
StyD4I CCNGG 2 cut(s) 340, 645
TaaI ACNGT 2 cut(s) 132, 962
TaqI TCGA 2 cut(s) 99, 632
TasI AATT 4 cut(s) 372, 490, 523, 772
TauI GCSGC 1 cut(s) 630
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 2 cut(s) 423, 536
Tru9I TTAA 2 cut(s) 423, 536
TseFI GTSAC 2 cut(s) 225, 733
TseI GCWGC 1 cut(s) 637
Tsp45I GTSAC 2 cut(s) 225, 733
TspDTI ATGAA 3 cut(s) 17, 38, 515
Van91I CCANNNNNTGG 2 cut(s) 152, 698
VpaK11BI GGWCC 6 cut(s) 114, 155, 277, 407, 655, 823
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 875
XspI CTAG 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.