Rorug05G0072200

Protein of unknown function (DUF1639)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
6206973 .. 6207209
237 bp
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UTR
Exon/CDS
Intron
Rorug05G0072200.1

Sequence Viewer

Length: 237 bp
ATGGGTCGAAACGGATTCGACAACTGTTTTAAGATATTTGCTTCACCAAAATTGGTTCCTTGGCGGCTCCGTGTTCAGTGGTCCAATTGTTTGGCTCTTGCAAAGGCTTTGCATCTGCATGTTTCACACATATTCAGGGAAGGAAATGCCCCTGCTGACACCTTGGCTAATTATGGTGCCTCTCATGACGGAGCTAGGGAATATGTGGTTGTCTCTGCCCTCGTTCTTGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.58

Weight (kDa)

9.02

Isoelectric Point (pI)

22.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 64
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 36
AvaII GGWCC 1 cut(s) 81
BanI GGYRCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 195
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 3 cut(s) 57, 68, 178
BmsI GCATC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 59, 162
BseDI CCNNGG 2 cut(s) 59, 162
BshNI GGYRCC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 217
BspACI CCGC 1 cut(s) 64
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 57, 68, 178
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 59, 162
BssT1I CCWWGG 2 cut(s) 59, 162
Bst4CI ACNGT 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 2 cut(s) 119, 185
CviJI RGCY 5 cut(s) 67, 95, 107, 167, 194
CviKI_1 RGCY 5 cut(s) 67, 95, 107, 167, 194
Eco130I CCWWGG 2 cut(s) 59, 162
Eco47I GGWCC 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 59, 162
ErhI CCWWGG 2 cut(s) 59, 162
FaeI CATG 2 cut(s) 122, 188
FaiI YATR 5 cut(s) 120, 131, 174, 186, 204
FatI CATG 2 cut(s) 118, 184
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 122, 188
HinfI GANTC 1 cut(s) 15
HphI GGTGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 101, 112, 118
Hsp92II CATG 2 cut(s) 122, 188
LmnI GCTCC 2 cut(s) 72, 191
LpnPI CCDG 2 cut(s) 121, 165
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 195
MfeI CAATTG 1 cut(s) 85
MluCI AATT 3 cut(s) 50, 85, 169
MnlI CCTC 2 cut(s) 190, 230
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 117
MunI CAATTG 1 cut(s) 85
NlaIII CATG 2 cut(s) 122, 188
NlaIV GGNNCC 3 cut(s) 57, 68, 178
NspI RCATGY 1 cut(s) 122
PagI TCATGA 1 cut(s) 184
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 66
PspN4I GGNNCC 3 cut(s) 57, 68, 178
PspPI GGNCC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 81
SetI ASST 2 cut(s) 164, 196
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 3 cut(s) 50, 85, 169
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 195
StyI CCWWGG 2 cut(s) 59, 162
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 7, 18
TasI AATT 3 cut(s) 50, 85, 169
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 83
TspGWI ACGGA 3 cut(s) 27, 59, 204
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 81
XceI RCATGY 1 cut(s) 122
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.