RLG00000032649

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006362
Physical Location & Seq
Forward (+)
17313265 .. 17316786
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032649

Sequence Viewer

Length: 1098 bp
ATGAGGTACCAGAGAGTAAGCCCAGATTGCATTCCTCTCAGCAATGGCAAGAAACCCAGCATAAGAGCACTACCAAAAGAAGACATGATGACAGAGAACACAACAACCACAACAAGCAGCACAGTTTCTTCGTTGGAATCCAAACCCTTCAGATTCCGATCCCAACCCACAGCCCAAGACCCGACCCTCTCCCAATTCGGAGGCCTACCCACTTCTCCCAGCCCCGAAAACCGCCCCACCCACAGCCCCGGCCGCACCCCCAGCCCCATCCGCGCCGGCTCCGGCGGCGACGTGCTGCTCCAGTGGGGCCACAAAAAGAGGTCCCGGGTCTCGAGAACCGAGATCCGGGTCTTGGCTGATGAGTCCTCCTCATCAGCCCAAGCAAGACAAGCCAAGGTCCAAAGGAGAGCCGCCCACGCTGCCGCCGTGGCAGACAAGTCCATGCCTCCGCCGCCTCCTCCTCCCCCGGTTCCTTCTTCCAGCTCAACGTCGTCGTTTTCGAATGGTAGACTCAGAAAGGAAGCCTCAGGGTTGCTTCCAAACAGGAATTTGGAAGATCGATCCGCTGTGGTTAATGGGTCACCCTCGAGAAGCACTGCCGTCGGGAACGGTCGTGCTGCTTCTAGATCTATAGCTGGGAAAAGGTCTCCTCCTCCGGAGAAAAGTGAGAGAAAGATGCCATCTTGCTCGGGAAGGTCAGCCAAAGATGACAAGGCAAATGGGTCATCTGATCACCGTGCGAACCATGTCGATTCGACCTCATTACAATCGGAACAATTAGCTGGAGCCGCTAACCATTCTGCCGCACCAGCAGCTGAAAAAGTGAACTATGAAGTGGTCGAGTGGCCGAGAATTTACGTGGCTTTGTCTAGGAAGGAGAAAGAGGATGATTTCCTTGCAATGAAAGGCACGAAGCTGCCTCAGAGACCCAAGAAAAGGGCCAAGAATATTGACAGAACTCTTCAGTATTGTTTCCCAGGGATGTGGCTATCTGACTTGACAAGGAATCGCTATGAGGTCAGGGAGAAGAAATGTGTGAAGAAGCAGAAGCGAAGGGGACTGAAAGGGATGGAGAGCGTGGAAAGTGATTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

366

Amino Acids

39.86

Weight (kDa)

10.27

Isoelectric Point (pI)

70.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 289 - 338 1.8e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 508
AccII CGCG 1 cut(s) 273
AccIII TCCGGA 1 cut(s) 655
AclWI GGATC 3 cut(s) 153, 337, 555
AcoI YGGCCR 2 cut(s) 250, 845
AcsI RAATTY 2 cut(s) 547, 852
AcuI CTGAAG 2 cut(s) 133, 947
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 345, 352, 936
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 976
AluBI AGCT 5 cut(s) 483, 635, 782, 815, 916
AluI AGCT 5 cut(s) 483, 635, 782, 815, 916
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 3 cut(s) 334, 651, 919
AlwI GGATC 3 cut(s) 153, 337, 555
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 4 cut(s) 324, 331, 586, 688
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 5 cut(s) 202, 250, 307, 845, 939
ApeKI GCWGC 6 cut(s) 117, 295, 419, 617, 812, 916
ApoI RAATTY 2 cut(s) 547, 852
Asp718I GGTACC 1 cut(s) 6
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 4 cut(s) 307, 321, 397, 939
AsuC2I CCSGG 5 cut(s) 249, 325, 326, 347, 467
AsuHPI GGTGA 2 cut(s) 573, 725
AsuII TTCGAA 1 cut(s) 500
AvaI CYCGRG 4 cut(s) 324, 331, 586, 688
AvaII GGWCC 2 cut(s) 321, 397
AxyI CCTNAGG 1 cut(s) 526
BanI GGYRCC 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 6 cut(s) 129, 282, 406, 604, 824, 903
BccI CCATC 3 cut(s) 275, 688, 1063
BceAI ACGGC 2 cut(s) 410, 584
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BciT130I CCWGG 1 cut(s) 978
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 5 cut(s) 249, 325, 326, 347, 467
BcoDI GTCTC 3 cut(s) 334, 651, 919
BfaI CTAG 2 cut(s) 624, 870
BfmI CTRYAG 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 428
BglII AGATCT 1 cut(s) 626
Bme1390I CCNGG 6 cut(s) 249, 325, 326, 347, 467, 978
Bme18I GGWCC 2 cut(s) 321, 397
BmeT110I CYCGRG 4 cut(s) 324, 331, 586, 688
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 4 cut(s) 307, 321, 397, 939
BmiI GGNNCC 6 cut(s) 8, 280, 308, 323, 471, 787
BmrFI CCNGG 6 cut(s) 249, 325, 326, 347, 467, 978
BmsI GCATC 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 2 cut(s) 284, 804
Bpu14I TTCGAA 1 cut(s) 500
BpuMI CCSGG 5 cut(s) 249, 325, 326, 347, 467
Bsa29I ATCGAT 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 157
BsaI GGTCTC 3 cut(s) 334, 651, 919
BsaJI CCNNGG 7 cut(s) 247, 324, 393, 426, 465, 976, 977
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 352, 936
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 301
Bse21I CCTNAGG 1 cut(s) 526
Bse3DI GCAATG 2 cut(s) 49, 906
Bse8I GATNNNNATC 1 cut(s) 157
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 1 cut(s) 978
BseCI ATCGAT 1 cut(s) 559
BseDI CCNNGG 7 cut(s) 247, 324, 393, 426, 465, 976, 977
BseGI GGATG 4 cut(s) 267, 892, 987, 1074
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 3 cut(s) 345, 352, 936
BseMI GCAATG 2 cut(s) 49, 906
BseMII CTCAG 4 cut(s) 52, 526, 540, 935
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 5 cut(s) 358, 447, 450, 639, 642
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 6 cut(s) 129, 282, 406, 604, 824, 903
BseYI CCCAGC 4 cut(s) 56, 218, 260, 635
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 2 cut(s) 253, 613
BshFI GGCC 5 cut(s) 204, 252, 309, 847, 941
BshNI GGYRCC 1 cut(s) 6
BshVI ATCGAT 1 cut(s) 559
BsiEI CGRYCG 2 cut(s) 253, 613
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 4 cut(s) 324, 331, 586, 688
BsiSI CCGG 7 cut(s) 249, 276, 282, 325, 346, 467, 656
BslFI GGGAC 2 cut(s) 307, 1071
BslI CCNNNNNNNGG 3 cut(s) 345, 352, 936
BsmAI GTCTC 3 cut(s) 334, 651, 919
BsmFI GGGAC 2 cut(s) 307, 1071
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 5 cut(s) 204, 252, 309, 847, 941
Bso31I GGTCTC 3 cut(s) 334, 651, 919
BsoBI CYCGRG 4 cut(s) 324, 331, 586, 688
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 6 cut(s) 158, 342, 556, 560, 626, 730
BspANI GGCC 5 cut(s) 204, 252, 309, 847, 941
BspCNI CTCAG 4 cut(s) 51, 525, 539, 934
BspDI ATCGAT 1 cut(s) 559
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 6 cut(s) 8, 280, 308, 323, 471, 787
BspPI GGATC 3 cut(s) 153, 337, 555
BspT104I TTCGAA 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 6
BspTNI GGTCTC 3 cut(s) 334, 651, 919
BsrDI GCAATG 2 cut(s) 49, 906
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 7 cut(s) 247, 324, 393, 426, 465, 976, 977
BssMI GATC 6 cut(s) 158, 342, 556, 560, 626, 730
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 978
Bst4CI ACNGT 3 cut(s) 124, 611, 737
Bst6I CTCTTC 1 cut(s) 966
BstBAI YACGTR 1 cut(s) 859
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 4 cut(s) 38, 512, 526, 921
BstDSI CCRYGG 1 cut(s) 426
BstEII GGTNACC 1 cut(s) 579
BstF5I GGATG 4 cut(s) 267, 892, 987, 1074
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 6 cut(s) 161, 345, 559, 563, 629, 733
BstMAI GTCTC 3 cut(s) 334, 651, 919
BstMBI GATC 6 cut(s) 158, 342, 556, 560, 626, 730
BstMCI CGRYCG 2 cut(s) 253, 613
BstNI CCWGG 1 cut(s) 978
BstPI GGTNACC 1 cut(s) 579
BstSCI CCNGG 6 cut(s) 247, 323, 324, 345, 465, 976
BstSFI CTRYAG 1 cut(s) 630
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 6 cut(s) 129, 282, 406, 604, 824, 903
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 342, 626
BstXI CCANNNNNNTGG 1 cut(s) 984
BstYI RGATCY 2 cut(s) 342, 626
BstZI CGGCCG 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 559
Bsu36I CCTNAGG 1 cut(s) 526
BsuRI GGCC 5 cut(s) 204, 252, 309, 847, 941
BsuTUI ATCGAT 1 cut(s) 559
BtgI CCRYGG 1 cut(s) 426
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 4 cut(s) 267, 892, 987, 1074
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 308, 594
Cac8I GCNNGC 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 4 cut(s) 307, 321, 397, 939
Cfr9I CCCGGG 1 cut(s) 324
ClaI ATCGAT 1 cut(s) 559
Csp6I GTAC 1 cut(s) 7
CviAII CATG 3 cut(s) 85, 442, 746
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 4 cut(s) 38, 512, 526, 921
DpnI GATC 6 cut(s) 160, 344, 558, 562, 628, 732
DpnII GATC 6 cut(s) 158, 342, 556, 560, 626, 730
EaeI YGGCCR 2 cut(s) 250, 845
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 966
EarI CTCTTC 1 cut(s) 966
EciI GGCGGA 1 cut(s) 438
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 204
Eco31I GGTCTC 3 cut(s) 334, 651, 919
Eco47I GGWCC 2 cut(s) 321, 397
Eco52I CGGCCG 1 cut(s) 250
Eco57I CTGAAG 2 cut(s) 133, 947
Eco81I CCTNAGG 1 cut(s) 526
Eco88I CYCGRG 4 cut(s) 324, 331, 586, 688
Eco91I GGTNACC 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 321
EcoO65I GGTNACC 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 3 cut(s) 88, 445, 749
FaiI YATR 7 cut(s) 62, 86, 443, 632, 747, 831, 1014
FaqI GGGAC 2 cut(s) 307, 1071
FatI CATG 3 cut(s) 84, 441, 745
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 508
FokI GGATG 4 cut(s) 254, 899, 994, 1081
FspBI CTAG 2 cut(s) 624, 870
GlaI GCGC 1 cut(s) 274
GsaI CCCAGC 4 cut(s) 60, 222, 264, 639
GsuI CTGGAG 2 cut(s) 284, 804
HaeIII GGCC 5 cut(s) 204, 252, 309, 847, 941
HapII CCGG 7 cut(s) 249, 276, 282, 325, 346, 467, 656
HhaI GCGC 1 cut(s) 275
Hin1II CATG 3 cut(s) 88, 445, 749
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 7 cut(s) 137, 153, 362, 510, 752, 1006, 1088
HpaII CCGG 7 cut(s) 249, 276, 282, 325, 346, 467, 656
HphI GGTGA 2 cut(s) 573, 725
Hpy166II GTNNAC 2 cut(s) 509, 826
Hpy188I TCNGA 9 cut(s) 152, 158, 200, 515, 730, 772, 924, 994, 1093
Hpy188III TCNNGA 7 cut(s) 331, 333, 588, 604, 624, 656, 690
Hpy8I GTNNAC 2 cut(s) 509, 826
Hpy99I CGWCG 4 cut(s) 293, 493, 496, 605
HpyAV CCTTC 5 cut(s) 157, 483, 687, 868, 1047
HpyCH4III ACNGT 3 cut(s) 124, 611, 737
HpyCH4IV ACGT 3 cut(s) 291, 488, 858
HpyCH4V TGCA 2 cut(s) 30, 899
HpyF3I CTNAG 4 cut(s) 38, 512, 526, 921
HpySE526I ACGT 3 cut(s) 291, 488, 858
Hsp92II CATG 3 cut(s) 88, 445, 749
HspAI GCGC 1 cut(s) 273
Kpn2I TCCGGA 1 cut(s) 655
KpnI GGTACC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 6 cut(s) 158, 342, 556, 560, 626, 730
LmnI GCTCC 3 cut(s) 284, 303, 785
Lsp1109I GCAGC 6 cut(s) 129, 282, 406, 604, 824, 903
LweI GCATC 1 cut(s) 666
MaeI CTAG 2 cut(s) 624, 870
MaeII ACGT 3 cut(s) 291, 488, 858
MaeIII GTNAC 1 cut(s) 579
MalI GATC 6 cut(s) 160, 344, 558, 562, 628, 732
MboI GATC 6 cut(s) 158, 342, 556, 560, 626, 730
MboII GAAGA 7 cut(s) 92, 120, 468, 566, 953, 1039, 1051
MflI RGATCY 2 cut(s) 342, 626
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 4 cut(s) 194, 547, 776, 852
MlyI GAGTC 2 cut(s) 371, 504
MmeI TCCRAC 1 cut(s) 114
MroI TCCGGA 1 cut(s) 655
MroNI GCCGGC 1 cut(s) 275
MseI TTAA 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 566, 815
MspI CCGG 7 cut(s) 249, 276, 282, 325, 346, 467, 656
MspR9I CCNGG 6 cut(s) 249, 325, 326, 347, 467, 978
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 1 cut(s) 978
MvnI CGCG 1 cut(s) 273
NaeI GCCGGC 1 cut(s) 277
NciI CCSGG 5 cut(s) 249, 325, 326, 347, 467
NdeII GATC 6 cut(s) 158, 342, 556, 560, 626, 730
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 3 cut(s) 88, 445, 749
NlaIV GGNNCC 6 cut(s) 8, 280, 308, 323, 471, 787
NmeAIII GCCGAG 1 cut(s) 873
NmuCI GTSAC 1 cut(s) 579
NspV TTCGAA 1 cut(s) 500
PaeR7I CTCGAG 2 cut(s) 331, 586
PasI CCCWGGG 1 cut(s) 977
PceI AGGCCT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 423, 497
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 5 cut(s) 137, 153, 752, 1006, 1088
PleI GAGTC 2 cut(s) 370, 504
PpsI GAGTC 2 cut(s) 370, 504
Ppu21I YACGTR 1 cut(s) 859
PpuMI RGGWCCY 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 976
PspEI GGTNACC 1 cut(s) 579
PspFI CCCAGC 4 cut(s) 56, 218, 260, 635
PspGI CCWGG 1 cut(s) 976
PspN4I GGNNCC 6 cut(s) 8, 280, 308, 323, 471, 787
PspPI GGNCC 4 cut(s) 307, 321, 397, 939
PspPPI RGGWCCY 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 2 cut(s) 342, 626
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 573
Sau3AI GATC 6 cut(s) 158, 342, 556, 560, 626, 730
Sau96I GGNCC 4 cut(s) 307, 321, 397, 939
SchI GAGTC 2 cut(s) 371, 504
ScrFI CCNGG 6 cut(s) 249, 325, 326, 347, 467, 978
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 1 cut(s) 666
SfcI CTRYAG 1 cut(s) 630
Sfr274I CTCGAG 2 cut(s) 331, 586
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 2 cut(s) 321, 397
SlaI CTCGAG 2 cut(s) 331, 586
SmaI CCCGGG 1 cut(s) 326
SmlI CTYRAG 2 cut(s) 331, 586
SmoI CTYRAG 2 cut(s) 331, 586
Sse9I AATT 4 cut(s) 194, 547, 776, 852
SseBI AGGCCT 1 cut(s) 204
SspI AATATT 1 cut(s) 949
SspMI CTAG 2 cut(s) 624, 870
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 6 cut(s) 247, 323, 324, 345, 465, 976
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 3 cut(s) 124, 611, 737
TaiI ACGT 3 cut(s) 294, 491, 861
TaqI TCGA 7 cut(s) 332, 500, 559, 587, 750, 755, 840
TasI AATT 4 cut(s) 194, 547, 776, 852
TauI GCSGC 7 cut(s) 255, 288, 413, 425, 454, 791, 806
TfiI GAWTC 5 cut(s) 137, 153, 752, 1006, 1088
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 2 cut(s) 308, 601
TseFI GTSAC 1 cut(s) 579
TseI GCWGC 6 cut(s) 117, 295, 419, 617, 812, 916
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 2 cut(s) 846, 917
TspMI CCCGGG 1 cut(s) 324
TspRI CASTG 2 cut(s) 308, 601
VpaK11BI GGWCC 2 cut(s) 321, 397
XapI RAATTY 2 cut(s) 547, 852
XbaI TCTAGA 1 cut(s) 623
XhoI CTCGAG 2 cut(s) 331, 586
XmaI CCCGGG 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 508
XspI CTAG 2 cut(s) 624, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.