Rorug05G0072100

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006362
Physical Location & Seq
Forward (+)
6191453 .. 6192215
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0072100.1

Sequence Viewer

Length: 687 bp
ATGATTCGCGAGAAGCAGCAGGATAATCCCGACTACGCTTTCCTCTTCGGCGGCGAAGGCCACGGCTATTACCGTTACAAGCTCTACGCCTCCACTCGGGTCGGGTCGTTCAACCCGAATCCTCAATTCCCTCCTCACATGCTTCGTCCTCCGCTGAATCCGATGATGAATGGGCCGCCGAACCCGATGATGAGAGGCCCGCAGTCGTATTTCTACGAACAGCAGCGGCATAATCAGCAGCCTTTCAGAGTTTATGGGAGGTCCGATTATGACCAGGCGGCGGCGCAACCCTTTAAAGGGCTTTCGGGGCCGCTGCCTCCTGATGTTGCAATGGAGCTGAGCAATGTGCTTATGACGCTGAATGGGACCAAAGAGTCGCTTAAAGGAGCCAAGTTTTGGTTTATGCAGAGGTCTATTTTCGCTCCGGCTCTGGCTGAGGCTCTTAGAGAGAGGGTGTTTGGACTTGATGATCCTGAGAGGCAGCTACATGTGATATTCCTTGCCAATGACATTTTGTACGAAACCCTAAGAAGAAGAAGAAGAAGAAGAAGGAAGAAAAAGAAACGAAAAGAAAAGAAAAAGAAGAAAATCGCAGAAGAAGAAGAAGGAAGAAAAAGAAATGAAAAGAAAAGAAAAAGAAGAAGATCGCAGAACCCAGAAGAAGAAGGAAGAAAAAAAAAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

228

Amino Acids

26.98

Weight (kDa)

10.38

Isoelectric Point (pI)

73.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 113 - 185 5e-10 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 396
AccII CGCG 1 cut(s) 9
AciI CCGC 8 cut(s) 51, 152, 176, 200, 226, 278, 281, 311
AclWI GGATC 1 cut(s) 464
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 5 cut(s) 96, 280, 296, 297, 396
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 82, 337, 484
AluI AGCT 3 cut(s) 82, 337, 484
AlwI GGATC 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 4 cut(s) 58, 173, 196, 308
ApeKI GCWGC 5 cut(s) 16, 223, 238, 313, 481
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 5 cut(s) 173, 197, 261, 308, 366
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 2 cut(s) 261, 366
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 5 cut(s) 28, 235, 250, 300, 493
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 275
BlpI GCTNAGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 2 cut(s) 261, 366
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 5 cut(s) 173, 197, 261, 308, 366
BmiI GGNNCC 3 cut(s) 309, 367, 388
BmrFI CCNGG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 280, 296, 297, 396
Bse3DI GCAATG 2 cut(s) 336, 349
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 5 cut(s) 96, 280, 296, 297, 396
BseMI GCAATG 2 cut(s) 336, 349
BseMII CTCAG 3 cut(s) 329, 426, 465
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 5 cut(s) 28, 235, 250, 300, 493
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 60, 175, 198, 310
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 5 cut(s) 96, 280, 296, 297, 396
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 4 cut(s) 60, 175, 198, 310
BsoBI CYCGRG 1 cut(s) 96
Bsp143I GATC 2 cut(s) 469, 644
Bsp1720I GCTNAGC 1 cut(s) 338
Bsp68I TCGCGA 1 cut(s) 9
BspACI CCGC 8 cut(s) 51, 152, 176, 200, 226, 278, 281, 311
BspANI GGCC 4 cut(s) 60, 175, 198, 310
BspCNI CTCAG 3 cut(s) 330, 427, 466
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 309, 367, 388
BspPI GGATC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 336, 349
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 469, 644
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 5 cut(s) 338, 435, 443, 474, 527
BstDSI CCRYGG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 472, 647
BstMBI GATC 2 cut(s) 469, 644
BstMWI GCNNNNNNNGC 4 cut(s) 57, 235, 307, 355
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 142, 491
BstSCI CCNGG 1 cut(s) 273
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 28, 235, 250, 300, 493
BsuRI GGCC 4 cut(s) 60, 175, 198, 310
BtgI CCRYGG 1 cut(s) 61
BtuMI TCGCGA 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 5 cut(s) 173, 197, 261, 308, 366
CseI GACGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 517
CviAII CATG 2 cut(s) 139, 488
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 5 cut(s) 338, 435, 443, 474, 527
DpnI GATC 2 cut(s) 471, 646
DpnII GATC 2 cut(s) 469, 644
DraI TTTAAA 1 cut(s) 295
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 261, 366
Eco88I CYCGRG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 142, 491
FaiI YATR 7 cut(s) 140, 231, 255, 270, 353, 404, 489
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 379
FatI CATG 2 cut(s) 138, 487
FauI CCCGC 1 cut(s) 207
GlaI GCGC 1 cut(s) 285
HaeIII GGCC 4 cut(s) 60, 175, 198, 310
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 364
HhaI GCGC 1 cut(s) 286
Hin1II CATG 2 cut(s) 142, 491
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 4 cut(s) 4, 118, 157, 374
HpaII CCGG 1 cut(s) 425
Hpy188I TCNGA 3 cut(s) 162, 248, 265
Hpy188III TCNNGA 4 cut(s) 8, 29, 320, 473
HpyAV CCTTC 4 cut(s) 50, 543, 599, 659
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 329, 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 235, 307, 355
HpyF3I CTNAG 5 cut(s) 338, 435, 443, 474, 527
Hsp92II CATG 2 cut(s) 142, 491
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 2 cut(s) 469, 644
LmnI GCTCC 3 cut(s) 334, 386, 427
LpnPI CCDG 8 cut(s) 5, 260, 287, 333, 416, 438, 486, 669
Lsp1109I GCAGC 5 cut(s) 28, 235, 250, 300, 493
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 471, 646
MboI GATC 2 cut(s) 469, 644
MluCI AATT 1 cut(s) 125
MlyI GAGTC 1 cut(s) 383
MseI TTAA 2 cut(s) 294, 381
MspA1I CMGCKG 3 cut(s) 154, 226, 313
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 4 cut(s) 57, 235, 307, 355
NdeII GATC 2 cut(s) 469, 644
NlaIII CATG 2 cut(s) 142, 491
NlaIV GGNNCC 3 cut(s) 309, 367, 388
NruI TCGCGA 1 cut(s) 9
NspI RCATGY 2 cut(s) 142, 491
PciI ACATGT 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PfeI GAWTC 3 cut(s) 4, 118, 157
PflMI CCANNNNNTGG 1 cut(s) 396
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PscI ACATGT 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 309, 367, 388
PspPI GGNCC 5 cut(s) 173, 197, 261, 308, 366
RruI TCGCGA 1 cut(s) 9
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
SaqAI TTAA 2 cut(s) 294, 381
Sau3AI GATC 2 cut(s) 469, 644
Sau96I GGNCC 5 cut(s) 173, 197, 261, 308, 366
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 275
SetI ASST 5 cut(s) 84, 263, 339, 413, 486
SinI GGWCC 2 cut(s) 261, 366
Sse9I AATT 1 cut(s) 125
SsiI CCGC 8 cut(s) 51, 152, 176, 200, 226, 278, 281, 311
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 74
TasI AATT 1 cut(s) 125
TauI GCSGC 6 cut(s) 54, 178, 229, 281, 284, 313
TfiI GAWTC 3 cut(s) 4, 118, 157
Tru1I TTAA 2 cut(s) 294, 381
Tru9I TTAA 2 cut(s) 294, 381
TseI GCWGC 5 cut(s) 16, 223, 238, 313, 481
TspDTI ATGAA 2 cut(s) 182, 636
Van91I CCANNNNNTGG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 261, 366
XceI RCATGY 2 cut(s) 142, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.