Rmu_sc0006966.1_g000020

Protein of unknown function (DUF1639)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006966.1
Physical Location & Seq
Forward (+)
87308 .. 90842
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006966.1_g000020.1.cds

Sequence Viewer

Length: 1104 bp
atgatgatgaggtaccagagagttagcccagattgtgttcctctcagcaatggcaagaagcccagcataagagcactaccaaaagaagacatgatgacagagaacacaacaaccacaacaagcagcacagtttcttcgttggaatccaaacccttcaggttccgatcccaacccacagcccaagacccgaccctctcccaattcggaggcctatccacttctcccagccccgaaaaccgccccacccacagccccggccgcacccccagccccatccgcgccggctccggcggcgacgtgctgctccagtggggccacaaaaagaggtcccgggtctcgagaaccgagatccgggtcttggctgatgagtcctcctcatcagcccaagcaagacaagccaaggtccaaaggagagccgcccacgctgccgccgtggcagacaagtccatgcctcctccgcctcctcctcccccggtcccttcttccagctcaacgtcgtcgttttcgaatggtagactcagaaaggaagcctcagggttgcttccaaacaggaatttggaagatcgatccgctgtggttaatgggtcaccctcgagaagcactgccgtggggaatggtcgtgctgcttctagatctatagctgggaaaaggtctcctcctccagagaaaagtgagagaaagatgccatcttgctcgggaaggtcagccaaagatgacaaggcaaatgggtcatctgatcaccgtgcgaaccatgtcgattccacctcattacaatcggaacaattagctggagctgctaaccattctgccgcaccagcagctgaaaaagtgaactatgaagtggtggagtggccgagaatttacgtggctttgtctaggaaggagaaggaagatgatttccttgcaatgaaaggcacgaagctgcctcagagacccaagaaaagggccaagaacattgacagaactcttcagtattgtttcccagggatgtggctatctgacttgacaaggaatcgctatgaggtcagggagaagaaatgtgtgaagaagcagaagcgaagggggctgaaagggatggagagcgtggaaagtgattccgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

367

Amino Acids

40.1

Weight (kDa)

10.27

Isoelectric Point (pI)

69.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 514
AccII CGCG 1 cut(s) 279
AciI CCGC 9 cut(s) 238, 259, 277, 291, 417, 429, 458, 570, 810
AclWI GGATC 3 cut(s) 159, 343, 561
AcoI YGGCCR 2 cut(s) 256, 851
AcsI RAATTY 2 cut(s) 553, 858
AcuI CTGAAG 2 cut(s) 139, 953
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 351, 358, 942
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 982
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 6 cut(s) 489, 641, 788, 794, 821, 922
AluI AGCT 6 cut(s) 489, 641, 788, 794, 821, 922
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 3 cut(s) 340, 657, 925
AlwI GGATC 3 cut(s) 159, 343, 561
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 4 cut(s) 330, 337, 592, 694
AoxI GGCC 5 cut(s) 208, 256, 313, 851, 945
ApeKI GCWGC 7 cut(s) 123, 301, 425, 623, 794, 818, 922
ApoI RAATTY 2 cut(s) 553, 858
Asp718I GGTACC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 5 cut(s) 313, 327, 403, 475, 945
AsuC2I CCSGG 5 cut(s) 255, 331, 332, 353, 473
AsuHPI GGTGA 2 cut(s) 579, 731
AsuII TTCGAA 1 cut(s) 506
AvaI CYCGRG 4 cut(s) 330, 337, 592, 694
AvaII GGWCC 3 cut(s) 327, 403, 475
AxyI CCTNAGG 1 cut(s) 532
BanI GGYRCC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 7 cut(s) 135, 288, 412, 610, 781, 830, 909
BccI CCATC 3 cut(s) 281, 694, 1069
BceAI ACGGC 2 cut(s) 416, 590
BciT130I CCWGG 1 cut(s) 984
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 5 cut(s) 255, 331, 332, 353, 473
BcoDI GTCTC 3 cut(s) 340, 657, 925
BfaI CTAG 2 cut(s) 630, 876
BfmI CTRYAG 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 434
BglII AGATCT 1 cut(s) 632
Bme1390I CCNGG 6 cut(s) 255, 331, 332, 353, 473, 984
Bme18I GGWCC 3 cut(s) 327, 403, 475
BmeT110I CYCGRG 4 cut(s) 330, 337, 592, 694
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 5 cut(s) 313, 327, 403, 475, 945
BmiI GGNNCC 6 cut(s) 14, 161, 286, 314, 329, 477
BmrFI CCNGG 6 cut(s) 255, 331, 332, 353, 473, 984
BmsI GCATC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpmI CTGGAG 3 cut(s) 290, 645, 810
Bpu14I TTCGAA 1 cut(s) 506
BpuMI CCSGG 5 cut(s) 255, 331, 332, 353, 473
Bsa29I ATCGAT 1 cut(s) 565
BsaAI YACGTR 1 cut(s) 865
BsaI GGTCTC 3 cut(s) 340, 657, 925
BsaJI CCNNGG 8 cut(s) 253, 330, 399, 432, 471, 606, 982, 983
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 358, 942
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 307
Bse21I CCTNAGG 1 cut(s) 532
Bse3DI GCAATG 2 cut(s) 55, 912
BseBI CCWGG 1 cut(s) 984
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 8 cut(s) 253, 330, 399, 432, 471, 606, 982, 983
BseGI GGATG 3 cut(s) 273, 993, 1080
BseLI CCNNNNNNNGG 3 cut(s) 351, 358, 942
BseMI GCAATG 2 cut(s) 55, 912
BseMII CTCAG 4 cut(s) 58, 532, 546, 941
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 6 cut(s) 364, 444, 453, 456, 645, 648
BseX3I CGGCCG 1 cut(s) 256
BseXI GCAGC 7 cut(s) 135, 288, 412, 610, 781, 830, 909
BseYI CCCAGC 4 cut(s) 62, 224, 266, 641
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 5 cut(s) 210, 258, 315, 853, 947
BshNI GGYRCC 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 565
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 4 cut(s) 330, 337, 592, 694
BsiSI CCGG 6 cut(s) 255, 282, 288, 331, 352, 473
BslFI GGGAC 2 cut(s) 313, 461
BslI CCNNNNNNNGG 3 cut(s) 351, 358, 942
BsmAI GTCTC 3 cut(s) 340, 657, 925
BsmFI GGGAC 2 cut(s) 313, 461
BsnI GGCC 5 cut(s) 210, 258, 315, 853, 947
Bso31I GGTCTC 3 cut(s) 340, 657, 925
BsoBI CYCGRG 4 cut(s) 330, 337, 592, 694
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 6 cut(s) 164, 348, 562, 566, 632, 736
BspACI CCGC 9 cut(s) 238, 259, 277, 291, 417, 429, 458, 570, 810
BspANI GGCC 5 cut(s) 210, 258, 315, 853, 947
BspCNI CTCAG 4 cut(s) 57, 531, 545, 940
BspDI ATCGAT 1 cut(s) 565
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 6 cut(s) 14, 161, 286, 314, 329, 477
BspPI GGATC 3 cut(s) 159, 343, 561
BspT104I TTCGAA 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 3 cut(s) 340, 657, 925
BsrDI GCAATG 2 cut(s) 55, 912
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 8 cut(s) 253, 330, 399, 432, 471, 606, 982, 983
BssMI GATC 6 cut(s) 164, 348, 562, 566, 632, 736
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 984
Bst4CI ACNGT 2 cut(s) 130, 743
Bst6I CTCTTC 1 cut(s) 972
BstBAI YACGTR 1 cut(s) 865
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 4 cut(s) 44, 518, 532, 927
BstDSI CCRYGG 2 cut(s) 432, 606
BstEII GGTNACC 1 cut(s) 585
BstF5I GGATG 3 cut(s) 273, 993, 1080
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 6 cut(s) 167, 351, 565, 569, 635, 739
BstMAI GTCTC 3 cut(s) 340, 657, 925
BstMBI GATC 6 cut(s) 164, 348, 562, 566, 632, 736
BstMCI CGRYCG 1 cut(s) 259
BstNI CCWGG 1 cut(s) 984
BstPI GGTNACC 1 cut(s) 585
BstSCI CCNGG 6 cut(s) 253, 329, 330, 351, 471, 982
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 7 cut(s) 135, 288, 412, 610, 781, 830, 909
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 348, 632
BstXI CCANNNNNNTGG 1 cut(s) 990
BstYI RGATCY 2 cut(s) 348, 632
BstZI CGGCCG 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 532
BsuRI GGCC 5 cut(s) 210, 258, 315, 853, 947
BsuTUI ATCGAT 1 cut(s) 565
BtgI CCRYGG 2 cut(s) 432, 606
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 3 cut(s) 273, 993, 1080
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 314, 600
Cac8I GCNNGC 1 cut(s) 283
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 5 cut(s) 313, 327, 403, 475, 945
Cfr9I CCCGGG 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 565
Csp6I GTAC 1 cut(s) 13
CviAII CATG 3 cut(s) 91, 448, 752
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 4 cut(s) 44, 518, 532, 927
DpnI GATC 6 cut(s) 166, 350, 564, 568, 634, 738
DpnII GATC 6 cut(s) 164, 348, 562, 566, 632, 736
EaeI YGGCCR 2 cut(s) 256, 851
EagI CGGCCG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 972
EarI CTCTTC 1 cut(s) 972
EciI GGCGGA 1 cut(s) 447
EclXI CGGCCG 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 210
Eco31I GGTCTC 3 cut(s) 340, 657, 925
Eco47I GGWCC 3 cut(s) 327, 403, 475
Eco52I CGGCCG 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 139, 953
Eco81I CCTNAGG 1 cut(s) 532
Eco88I CYCGRG 4 cut(s) 330, 337, 592, 694
Eco91I GGTNACC 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 327
EcoO65I GGTNACC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 982
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 3 cut(s) 94, 451, 755
FaiI YATR 7 cut(s) 68, 92, 449, 638, 753, 837, 1020
FaqI GGGAC 2 cut(s) 313, 461
FatI CATG 3 cut(s) 90, 447, 751
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 1 cut(s) 514
FokI GGATG 3 cut(s) 260, 1000, 1087
FspBI CTAG 2 cut(s) 630, 876
GlaI GCGC 1 cut(s) 280
GsaI CCCAGC 4 cut(s) 66, 228, 270, 645
GsuI CTGGAG 3 cut(s) 290, 645, 810
HaeIII GGCC 5 cut(s) 210, 258, 315, 853, 947
HapII CCGG 6 cut(s) 255, 282, 288, 331, 352, 473
HhaI GCGC 1 cut(s) 281
Hin1II CATG 3 cut(s) 94, 451, 755
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 6 cut(s) 143, 368, 516, 758, 1012, 1094
HpaII CCGG 6 cut(s) 255, 282, 288, 331, 352, 473
HphI GGTGA 2 cut(s) 579, 731
Hpy166II GTNNAC 2 cut(s) 515, 832
Hpy188I TCNGA 8 cut(s) 164, 206, 521, 736, 778, 930, 1000, 1099
Hpy188III TCNNGA 6 cut(s) 337, 339, 594, 630, 662, 696
Hpy8I GTNNAC 2 cut(s) 515, 832
Hpy99I CGWCG 3 cut(s) 299, 499, 502
HpyAV CCTTC 6 cut(s) 163, 489, 693, 874, 880, 1053
HpyCH4III ACNGT 2 cut(s) 130, 743
HpyCH4IV ACGT 3 cut(s) 297, 494, 864
HpyCH4V TGCA 1 cut(s) 905
HpyF3I CTNAG 4 cut(s) 44, 518, 532, 927
HpySE526I ACGT 3 cut(s) 297, 494, 864
Hsp92II CATG 3 cut(s) 94, 451, 755
HspAI GCGC 1 cut(s) 279
KpnI GGTACC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 6 cut(s) 164, 348, 562, 566, 632, 736
LmnI GCTCC 3 cut(s) 290, 309, 791
Lsp1109I GCAGC 7 cut(s) 135, 288, 412, 610, 781, 830, 909
LweI GCATC 1 cut(s) 672
MaeI CTAG 2 cut(s) 630, 876
MaeII ACGT 3 cut(s) 297, 494, 864
MaeIII GTNAC 1 cut(s) 585
MalI GATC 6 cut(s) 166, 350, 564, 568, 634, 738
MboI GATC 6 cut(s) 164, 348, 562, 566, 632, 736
MboII GAAGA 8 cut(s) 98, 126, 474, 572, 902, 959, 1045, 1057
MflI RGATCY 2 cut(s) 348, 632
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 4 cut(s) 200, 553, 782, 858
MlyI GAGTC 2 cut(s) 377, 510
MmeI TCCRAC 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 572, 821
MspI CCGG 6 cut(s) 255, 282, 288, 331, 352, 473
MspR9I CCNGG 6 cut(s) 255, 331, 332, 353, 473, 984
MvaI CCWGG 1 cut(s) 984
MvnI CGCG 1 cut(s) 279
NaeI GCCGGC 1 cut(s) 283
NciI CCSGG 5 cut(s) 255, 331, 332, 353, 473
NdeII GATC 6 cut(s) 164, 348, 562, 566, 632, 736
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 3 cut(s) 94, 451, 755
NlaIV GGNNCC 6 cut(s) 14, 161, 286, 314, 329, 477
NmeAIII GCCGAG 1 cut(s) 879
NmuCI GTSAC 1 cut(s) 585
NspV TTCGAA 1 cut(s) 506
OliI CACNNNNGTG 1 cut(s) 605
PaeR7I CTCGAG 2 cut(s) 337, 592
PasI CCCWGGG 1 cut(s) 983
PceI AGGCCT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 2 cut(s) 429, 503
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 4 cut(s) 143, 758, 1012, 1094
PleI GAGTC 2 cut(s) 376, 510
PpsI GAGTC 2 cut(s) 376, 510
Ppu21I YACGTR 1 cut(s) 865
PpuMI RGGWCCY 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 982
PspEI GGTNACC 1 cut(s) 585
PspFI CCCAGC 4 cut(s) 62, 224, 266, 641
PspGI CCWGG 1 cut(s) 982
PspN4I GGNNCC 6 cut(s) 14, 161, 286, 314, 329, 477
PspPI GGNCC 5 cut(s) 313, 327, 403, 475, 945
PspPPI RGGWCCY 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 2 cut(s) 348, 632
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 605
SaqAI TTAA 1 cut(s) 579
Sau3AI GATC 6 cut(s) 164, 348, 562, 566, 632, 736
Sau96I GGNCC 5 cut(s) 313, 327, 403, 475, 945
SchI GAGTC 2 cut(s) 377, 510
ScrFI CCNGG 6 cut(s) 255, 331, 332, 353, 473, 984
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 1 cut(s) 672
SfcI CTRYAG 1 cut(s) 636
Sfr274I CTCGAG 2 cut(s) 337, 592
SfuI TTCGAA 1 cut(s) 506
SinI GGWCC 3 cut(s) 327, 403, 475
SlaI CTCGAG 2 cut(s) 337, 592
SmaI CCCGGG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 2 cut(s) 337, 592
SmoI CTYRAG 2 cut(s) 337, 592
Sse9I AATT 4 cut(s) 200, 553, 782, 858
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 9 cut(s) 238, 259, 277, 291, 417, 429, 458, 570, 810
SspMI CTAG 2 cut(s) 630, 876
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 6 cut(s) 253, 329, 330, 351, 471, 982
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 130, 743
TaiI ACGT 3 cut(s) 300, 497, 867
TaqI TCGA 5 cut(s) 338, 506, 565, 593, 756
TasI AATT 4 cut(s) 200, 553, 782, 858
TauI GCSGC 5 cut(s) 261, 294, 419, 431, 812
TfiI GAWTC 4 cut(s) 143, 758, 1012, 1094
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 2 cut(s) 314, 607
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 7 cut(s) 123, 301, 425, 623, 794, 818, 922
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 2 cut(s) 852, 923
TspMI CCCGGG 1 cut(s) 330
TspRI CASTG 2 cut(s) 314, 607
VpaK11BI GGWCC 3 cut(s) 327, 403, 475
XapI RAATTY 2 cut(s) 553, 858
XbaI TCTAGA 1 cut(s) 629
XhoI CTCGAG 2 cut(s) 337, 592
XmaI CCCGGG 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 514
XspI CTAG 2 cut(s) 630, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.