Rroxscaffold_1G00056770

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006362
Physical Location & Seq
Reverse (-)
78691039 .. 78695319
4281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056770.1

Sequence Viewer

Length: 1068 bp
ATGATGATGAGGTTTCTGAAAATCAGCTTCTGTTTCCAATGGGATTTTGCTGGGAAGCAGAAGAAGCGCCTCAGCTGCCATGGAAACAGAGCTGGCTATTTGGATGAAAATGGGGTACCAGAGAATTCCGATCCCAACCCACAGCCCAAGACCCGACCCTTTCCCAATTCGGAGGCCTACCCACTTCTCCCAGCCCCGAAAACCGCCCCACCCACAGCCCCGGCCGCACCCCCAGCCCCATCCGCGCCGGCTCCGGCGGCGACGTGCTGCTCCAGTGGGGCCACAAAGAGGTCCCGGGTCTCGAGAACCGAGATCCGGGTCTTGGCTGATGAGTCCTCCTCATCGGCCCAAGCAAGACAAGCCAAGGTCCAAAGGAGAGCCGCCCACGCTGCCGCCGTGGCAGACAAGTCCATGCCTCCGCCGCCTCCTCCTCCCCCGGTCCCTTCTTCCAGCTCAACGTCGTCGTTTTCGAATGGTAGACTCAGAAAGGAAGCCTCAGGGTTGCTTCCAAACAGGAATTTGGAAGATCGATCCGCTGTGGTTAATGGGTCACCCTCGAGAAGCACTGCCGTCGGGAACGGCCGTGCTGCTTCTAGATCTATAGCTGGGAAAAGGTCTCCTCCTCCAGAGAGAAGTGAGAGAAAGATGCCATCTTGCTCGGGAAGGTCAGCCAAAGATGACAAGGCAAATGGGTCATCTGATCACCGTGCGAACCATGTCGATTCCACCTCATTACAGTCGGAACAATTAGCTGGAGCTGCTAACCATTCTGCCGCACCAGCAGCTGAAAAAGTGAACTATGAAGTGGTCGAGTGGCCGAGAATTTACGTGGCTTTGTCTAGGAAGGAGAAAGAAGATGATTTCCTTGCAATGAAAGGCACGAAGCTGCCTCAGAGACCCAAGAAAAGGGCCAAGAACATTGACAGAACTCTTCAGTATTGTTTCCCAGGGATGTGGCTATCTGACCTGACAAGGAATCGCTATGAGGTCAGGGAGAAGAAATGTGTGAAGAAGCAGAAGCGAAGGGGACTGAAAGGGATGGAGAGCGTGGAAAGTGATTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

355

Amino Acids

38.6

Weight (kDa)

10.06

Isoelectric Point (pI)

71.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 279 - 328 1.8e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 478
AccII CGCG 1 cut(s) 245
AclWI GGATC 3 cut(s) 125, 307, 525
AcoI YGGCCR 3 cut(s) 222, 580, 815
AcsI RAATTY 3 cut(s) 124, 517, 822
AcuI CTGAAG 1 cut(s) 917
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 4 cut(s) 288, 315, 322, 906
AjiI CACGTC 1 cut(s) 264
AjnI CCWGG 1 cut(s) 946
AluBI AGCT 9 cut(s) 27, 75, 92, 453, 605, 752, 758, 785, 886
AluI AGCT 9 cut(s) 27, 75, 92, 453, 605, 752, 758, 785, 886
Alw26I GTCTC 3 cut(s) 304, 621, 889
AlwI GGATC 3 cut(s) 125, 307, 525
AlwNI CAGNNNCTG 2 cut(s) 30, 785
Ama87I CYCGRG 4 cut(s) 294, 301, 556, 658
AoxI GGCC 7 cut(s) 174, 222, 279, 345, 580, 815, 909
ApeKI GCWGC 7 cut(s) 75, 267, 389, 587, 758, 782, 886
ApoI RAATTY 3 cut(s) 124, 517, 822
Asp718I GGTACC 1 cut(s) 115
AspLEI GCGC 2 cut(s) 69, 247
AspS9I GGNCC 6 cut(s) 279, 291, 346, 367, 439, 909
AsuC2I CCSGG 5 cut(s) 221, 295, 296, 317, 437
AsuHPI GGTGA 2 cut(s) 543, 695
AsuII TTCGAA 1 cut(s) 470
AvaI CYCGRG 4 cut(s) 294, 301, 556, 658
AvaII GGWCC 3 cut(s) 291, 367, 439
AxyI CCTNAGG 1 cut(s) 496
BanI GGYRCC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 7 cut(s) 62, 254, 376, 574, 745, 794, 873
BccI CCATC 3 cut(s) 247, 658, 1033
BceAI ACGGC 4 cut(s) 380, 554, 567, 595
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 1 cut(s) 948
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 5 cut(s) 221, 295, 296, 317, 437
BcoDI GTCTC 3 cut(s) 304, 621, 889
BfaI CTAG 2 cut(s) 594, 840
BfmI CTRYAG 1 cut(s) 600
BfoI RGCGCY 1 cut(s) 70
BglI GCCNNNNNGGC 1 cut(s) 398
BglII AGATCT 1 cut(s) 596
Bme1390I CCNGG 6 cut(s) 221, 295, 296, 317, 437, 948
Bme18I GGWCC 3 cut(s) 291, 367, 439
BmeT110I CYCGRG 4 cut(s) 294, 301, 556, 658
BmgBI CACGTC 1 cut(s) 264
BmgT120I GGNCC 6 cut(s) 279, 291, 346, 367, 439, 909
BmiI GGNNCC 5 cut(s) 117, 252, 280, 293, 441
BmrFI CCNGG 6 cut(s) 221, 295, 296, 317, 437, 948
BmsI GCATC 1 cut(s) 636
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 3 cut(s) 256, 609, 774
Bpu10I CCTNAGC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 470
BpuMI CCSGG 5 cut(s) 221, 295, 296, 317, 437
Bsa29I ATCGAT 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 829
BsaI GGTCTC 3 cut(s) 304, 621, 889
BsaJI CCNNGG 8 cut(s) 79, 219, 294, 363, 396, 435, 946, 947
Bsc4I CCNNNNNNNGG 4 cut(s) 288, 315, 322, 906
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 273
Bse21I CCTNAGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 876
BseBI CCWGG 1 cut(s) 948
BseCI ATCGAT 1 cut(s) 529
BseDI CCNNGG 8 cut(s) 79, 219, 294, 363, 396, 435, 946, 947
BseGI GGATG 4 cut(s) 109, 239, 957, 1044
BseLI CCNNNNNNNGG 4 cut(s) 288, 315, 322, 906
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 4 cut(s) 85, 496, 510, 905
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 5 cut(s) 328, 417, 420, 609, 612
BseX3I CGGCCG 2 cut(s) 222, 580
BseXI GCAGC 7 cut(s) 62, 254, 376, 574, 745, 794, 873
BseYI CCCAGC 4 cut(s) 50, 190, 232, 605
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 2 cut(s) 225, 583
BshFI GGCC 7 cut(s) 176, 224, 281, 347, 582, 817, 911
BshNI GGYRCC 1 cut(s) 115
BshVI ATCGAT 1 cut(s) 529
BsiEI CGRYCG 2 cut(s) 225, 583
BsiHKCI CYCGRG 4 cut(s) 294, 301, 556, 658
BsiSI CCGG 6 cut(s) 221, 248, 254, 295, 316, 437
BslFI GGGAC 3 cut(s) 277, 425, 1041
BslI CCNNNNNNNGG 4 cut(s) 288, 315, 322, 906
BsmAI GTCTC 3 cut(s) 304, 621, 889
BsmFI GGGAC 3 cut(s) 277, 425, 1041
BsnI GGCC 7 cut(s) 176, 224, 281, 347, 582, 817, 911
Bso31I GGTCTC 3 cut(s) 304, 621, 889
BsoBI CYCGRG 4 cut(s) 294, 301, 556, 658
Bsp119I TTCGAA 1 cut(s) 470
Bsp143I GATC 6 cut(s) 130, 312, 526, 530, 596, 700
Bsp19I CCATGG 1 cut(s) 79
BspANI GGCC 7 cut(s) 176, 224, 281, 347, 582, 817, 911
BspCNI CTCAG 4 cut(s) 84, 495, 509, 904
BspDI ATCGAT 1 cut(s) 529
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 5 cut(s) 117, 252, 280, 293, 441
BspPI GGATC 3 cut(s) 125, 307, 525
BspT104I TTCGAA 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 115
BspTNI GGTCTC 3 cut(s) 304, 621, 889
BsrDI GCAATG 1 cut(s) 876
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 8 cut(s) 79, 219, 294, 363, 396, 435, 946, 947
BssMI GATC 6 cut(s) 130, 312, 526, 530, 596, 700
BssT1I CCWWGG 2 cut(s) 79, 363
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 2 cut(s) 707, 738
Bst6I CTCTTC 1 cut(s) 936
BstBAI YACGTR 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 94, 249
BstDEI CTNAG 4 cut(s) 71, 482, 496, 891
BstDSI CCRYGG 2 cut(s) 79, 396
BstEII GGTNACC 1 cut(s) 549
BstF5I GGATG 4 cut(s) 109, 239, 957, 1044
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 2 cut(s) 69, 247
BstKTI GATC 6 cut(s) 133, 315, 529, 533, 599, 703
BstMAI GTCTC 3 cut(s) 304, 621, 889
BstMBI GATC 6 cut(s) 130, 312, 526, 530, 596, 700
BstMCI CGRYCG 2 cut(s) 225, 583
BstNI CCWGG 1 cut(s) 948
BstPI GGTNACC 1 cut(s) 549
BstSCI CCNGG 6 cut(s) 219, 293, 294, 315, 435, 946
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 7 cut(s) 62, 254, 376, 574, 745, 794, 873
BstX2I RGATCY 2 cut(s) 312, 596
BstXI CCANNNNNNTGG 1 cut(s) 954
BstYI RGATCY 2 cut(s) 312, 596
BstZI CGGCCG 2 cut(s) 222, 580
Bsu15I ATCGAT 1 cut(s) 529
Bsu36I CCTNAGG 1 cut(s) 496
BsuRI GGCC 7 cut(s) 176, 224, 281, 347, 582, 817, 911
BsuTUI ATCGAT 1 cut(s) 529
BtgI CCRYGG 2 cut(s) 79, 396
BtrI CACGTC 1 cut(s) 264
BtsCI GGATG 4 cut(s) 109, 239, 957, 1044
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 280, 564
Cac8I GCNNGC 2 cut(s) 94, 249
CaiI CAGNNNCTG 2 cut(s) 30, 785
CfoI GCGC 2 cut(s) 69, 247
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 6 cut(s) 279, 291, 346, 367, 439, 909
Cfr9I CCCGGG 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 529
Csp6I GTAC 1 cut(s) 116
CviAII CATG 3 cut(s) 80, 412, 716
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 4 cut(s) 71, 482, 496, 891
DpnI GATC 6 cut(s) 132, 314, 528, 532, 598, 702
DpnII GATC 6 cut(s) 130, 312, 526, 530, 596, 700
EaeI YGGCCR 3 cut(s) 222, 580, 815
EagI CGGCCG 2 cut(s) 222, 580
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
EciI GGCGGA 1 cut(s) 408
EclXI CGGCCG 2 cut(s) 222, 580
Eco130I CCWWGG 2 cut(s) 79, 363
Eco147I AGGCCT 1 cut(s) 176
Eco31I GGTCTC 3 cut(s) 304, 621, 889
Eco47I GGWCC 3 cut(s) 291, 367, 439
Eco52I CGGCCG 2 cut(s) 222, 580
Eco57I CTGAAG 1 cut(s) 917
Eco81I CCTNAGG 1 cut(s) 496
Eco88I CYCGRG 4 cut(s) 294, 301, 556, 658
Eco91I GGTNACC 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 291
EcoO65I GGTNACC 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 79, 363
ErhI CCWWGG 2 cut(s) 79, 363
FaeI CATG 3 cut(s) 83, 415, 719
FaiI YATR 6 cut(s) 81, 413, 602, 717, 801, 984
FaqI GGGAC 3 cut(s) 277, 425, 1041
FatI CATG 3 cut(s) 79, 411, 715
FbaI TGATCA 1 cut(s) 700
FblI GTMKAC 1 cut(s) 478
FokI GGATG 4 cut(s) 116, 226, 964, 1051
FspBI CTAG 2 cut(s) 594, 840
GlaI GCGC 2 cut(s) 68, 246
GsaI CCCAGC 4 cut(s) 54, 194, 236, 609
GsuI CTGGAG 3 cut(s) 256, 609, 774
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 7 cut(s) 176, 224, 281, 347, 582, 817, 911
HapII CCGG 6 cut(s) 221, 248, 254, 295, 316, 437
HhaI GCGC 2 cut(s) 69, 247
Hin1II CATG 3 cut(s) 83, 415, 719
Hin6I GCGC 2 cut(s) 67, 245
HinP1I GCGC 2 cut(s) 67, 245
HinfI GANTC 5 cut(s) 332, 480, 722, 976, 1058
HpaII CCGG 6 cut(s) 221, 248, 254, 295, 316, 437
HphI GGTGA 2 cut(s) 543, 695
Hpy166II GTNNAC 2 cut(s) 479, 796
Hpy188I TCNGA 9 cut(s) 18, 130, 172, 485, 700, 742, 894, 964, 1063
Hpy188III TCNNGA 7 cut(s) 301, 303, 558, 574, 594, 626, 660
Hpy8I GTNNAC 2 cut(s) 479, 796
Hpy99I CGWCG 4 cut(s) 265, 463, 466, 575
HpyAV CCTTC 4 cut(s) 453, 657, 838, 1017
HpyCH4III ACNGT 2 cut(s) 707, 738
HpyCH4IV ACGT 3 cut(s) 263, 458, 828
HpyCH4V TGCA 1 cut(s) 869
HpyF3I CTNAG 4 cut(s) 71, 482, 496, 891
HpySE526I ACGT 3 cut(s) 263, 458, 828
Hsp92II CATG 3 cut(s) 83, 415, 719
HspAI GCGC 2 cut(s) 67, 245
KpnI GGTACC 1 cut(s) 119
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 6 cut(s) 130, 312, 526, 530, 596, 700
LmnI GCTCC 3 cut(s) 256, 275, 755
Lsp1109I GCAGC 7 cut(s) 62, 254, 376, 574, 745, 794, 873
LweI GCATC 1 cut(s) 636
MaeI CTAG 2 cut(s) 594, 840
MaeII ACGT 3 cut(s) 263, 458, 828
MaeIII GTNAC 1 cut(s) 549
MalI GATC 6 cut(s) 132, 314, 528, 532, 598, 702
MboI GATC 6 cut(s) 130, 312, 526, 530, 596, 700
MboII GAAGA 7 cut(s) 73, 438, 536, 866, 923, 1009, 1021
MflI RGATCY 2 cut(s) 312, 596
MluCI AATT 5 cut(s) 124, 166, 517, 746, 822
MlyI GAGTC 2 cut(s) 341, 474
MmeI TCCRAC 1 cut(s) 720
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 1 cut(s) 543
MspA1I CMGCKG 3 cut(s) 75, 536, 785
MspI CCGG 6 cut(s) 221, 248, 254, 295, 316, 437
MspR9I CCNGG 6 cut(s) 221, 295, 296, 317, 437, 948
MvaI CCWGG 1 cut(s) 948
MvnI CGCG 1 cut(s) 245
NaeI GCCGGC 1 cut(s) 249
NciI CCSGG 5 cut(s) 221, 295, 296, 317, 437
NcoI CCATGG 1 cut(s) 79
NdeII GATC 6 cut(s) 130, 312, 526, 530, 596, 700
NgoMIV GCCGGC 1 cut(s) 247
NlaIII CATG 3 cut(s) 83, 415, 719
NlaIV GGNNCC 5 cut(s) 117, 252, 280, 293, 441
NmeAIII GCCGAG 1 cut(s) 843
NmuCI GTSAC 1 cut(s) 549
NspV TTCGAA 1 cut(s) 470
PaeR7I CTCGAG 2 cut(s) 301, 556
PasI CCCWGGG 1 cut(s) 947
PceI AGGCCT 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 393, 467
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 722, 976, 1058
PleI GAGTC 2 cut(s) 340, 474
PpsI GAGTC 2 cut(s) 340, 474
Ppu21I YACGTR 1 cut(s) 829
PpuMI RGGWCCY 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 946
PspEI GGTNACC 1 cut(s) 549
PspFI CCCAGC 4 cut(s) 50, 190, 232, 605
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 5 cut(s) 117, 252, 280, 293, 441
PspPI GGNCC 6 cut(s) 279, 291, 346, 367, 439, 909
PspPPI RGGWCCY 1 cut(s) 291
PstNI CAGNNNCTG 2 cut(s) 30, 785
PsuI RGATCY 2 cut(s) 312, 596
PvuII CAGCTG 2 cut(s) 75, 785
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 543
Sau3AI GATC 6 cut(s) 130, 312, 526, 530, 596, 700
Sau96I GGNCC 6 cut(s) 279, 291, 346, 367, 439, 909
SchI GAGTC 2 cut(s) 341, 474
ScrFI CCNGG 6 cut(s) 221, 295, 296, 317, 437, 948
SfaNI GCATC 1 cut(s) 636
SfcI CTRYAG 1 cut(s) 600
Sfr274I CTCGAG 2 cut(s) 301, 556
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 3 cut(s) 291, 367, 439
SlaI CTCGAG 2 cut(s) 301, 556
SmaI CCCGGG 1 cut(s) 296
SmlI CTYRAG 2 cut(s) 301, 556
SmoI CTYRAG 2 cut(s) 301, 556
Sse9I AATT 5 cut(s) 124, 166, 517, 746, 822
SseBI AGGCCT 1 cut(s) 176
SspMI CTAG 2 cut(s) 594, 840
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 6 cut(s) 219, 293, 294, 315, 435, 946
StyI CCWWGG 2 cut(s) 79, 363
TaaI ACNGT 2 cut(s) 707, 738
TaiI ACGT 3 cut(s) 266, 461, 831
TaqI TCGA 6 cut(s) 302, 470, 529, 557, 720, 810
TasI AATT 5 cut(s) 124, 166, 517, 746, 822
TauI GCSGC 6 cut(s) 227, 260, 383, 395, 424, 776
TfiI GAWTC 3 cut(s) 722, 976, 1058
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 2 cut(s) 280, 571
TseFI GTSAC 1 cut(s) 549
TseI GCWGC 7 cut(s) 75, 267, 389, 587, 758, 782, 886
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 3 cut(s) 120, 816, 887
TspMI CCCGGG 1 cut(s) 294
TspRI CASTG 2 cut(s) 280, 571
VpaK11BI GGWCC 3 cut(s) 291, 367, 439
XapI RAATTY 3 cut(s) 124, 517, 822
XbaI TCTAGA 1 cut(s) 593
XhoI CTCGAG 2 cut(s) 301, 556
XmaI CCCGGG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 2 cut(s) 594, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.