Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407311.1

Orthogroup ID

OG0006362

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 936

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407311.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgaccaggaatttggaagatcgatccgctgtggttaatgggtcaccctcgagaagcactgccgtggggaatggtcgtgctgcttctagatctatagctgggaaaaggtctcctcctccagagaaaagtgagagaaagatgccatcttgctcgggaaggtcagccaaagatgacaaggcaaatgggtcatctgatcaccgtgcgaaccatgtcgattccacctcattacaatcggaacaattagctggagctgctaaccattctgccgcaccagcagctgaaaaagtgaactatgaagtggtggagtggccgagaatttacgtggctttgtctaggaaggagaaggaagatgatttccttgcaatgaaaggcacgaagctgcctcagagacccaagaaaagggccaagaacattgacagaactcttcagtattgtttcccagggatgtggctatctgacttgacaaggaatcgctatgaggtcagggagaagaaatgtgtgaagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

169

Amino Acids

18.79

Weight (kDa)

9.97

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20300 AT4G20300
fragaria_vesca	FvH4_3g13430 FvH4_3g13430 FvH4_3g13430 FvH4_3g13430 FvH4_3g13430
malus_domestica	MD05G1241700.v1.1 MD10G1223600.v1.1
prunus_persica	Prupe.4G121700_v2.0.a1
pyrus_communis	pycom05g21840 pycom10g18750 pycom13g29030
rosa_chinensis	RchiOBHm_Chr5g0022171
rosa_laevigata	RLG00000032649
rosa_multiflora	Rmu_co8407311.1_g000001 Rmu_sc0006966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00056770
rosa_rugosa	Rorug05G0072000 Rorug05G0072000 Rorug05G0072100 Rorug05G0072200
rosa_samantha	Rh5AG159900 Rh5BG159300 Rh5CG173600 Rh5DG159400
rosa_wichuraiana	Rw5G014270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	27, 267
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	10, 315
AcuI	CTGAAG	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	399
AjnI	CCWGG	2 cut(s)	5, 439
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	98, 245, 251, 278, 379
AluI	AGCT	5 cut(s)	98, 245, 251, 278, 379
Alw26I	GTCTC	2 cut(s)	114, 382
AlwI	GGATC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	2 cut(s)	49, 151
AoxI	GGCC	2 cut(s)	308, 402
ApeKI	GCWGC	4 cut(s)	80, 251, 275, 379
ApoI	RAATTY	2 cut(s)	10, 315
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	36, 188
AvaI	CYCGRG	2 cut(s)	49, 151
BbvI	GCAGC	4 cut(s)	67, 238, 287, 366
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	7, 441
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	114, 382
BfaI	CTAG	2 cut(s)	87, 333
BfmI	CTRYAG	1 cut(s)	93
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	5 cut(s)	81, 252, 267, 276, 380
BlsI	GCNGC	5 cut(s)	82, 253, 268, 277, 381
Bme1390I	CCNGG	2 cut(s)	7, 441
BmeT110I	CYCGRG	2 cut(s)	49, 151
BmgT120I	GGNCC	1 cut(s)	402
BmrFI	CCNGG	2 cut(s)	7, 441
BmsI	GCATC	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	102, 267
Bsa29I	ATCGAT	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	322
BsaI	GGTCTC	2 cut(s)	114, 382
BsaJI	CCNNGG	3 cut(s)	63, 439, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	7, 441
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	63, 439, 440
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	102, 105
BseXI	GCAGC	4 cut(s)	67, 238, 287, 366
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	310, 404
BshVI	ATCGAT	1 cut(s)	22
BsiHKCI	CYCGRG	2 cut(s)	49, 151
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	114, 382
BsnI	GGCC	2 cut(s)	310, 404
Bso31I	GGTCTC	2 cut(s)	114, 382
BsoBI	CYCGRG	2 cut(s)	49, 151
Bsp143I	GATC	4 cut(s)	19, 23, 89, 193
BspACI	CCGC	2 cut(s)	27, 267
BspANI	GGCC	2 cut(s)	310, 404
BspCNI	CTCAG	1 cut(s)	397
BspDI	ATCGAT	1 cut(s)	22
BspPI	GGATC	1 cut(s)	18
BspTNI	GGTCTC	2 cut(s)	114, 382
BsrDI	GCAATG	1 cut(s)	369
BssECI	CCNNGG	3 cut(s)	63, 439, 440
BssMI	GATC	4 cut(s)	19, 23, 89, 193
Bst2UI	CCWGG	2 cut(s)	7, 441
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	4 cut(s)	22, 26, 92, 196
BstMAI	GTCTC	2 cut(s)	114, 382
BstMBI	GATC	4 cut(s)	19, 23, 89, 193
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 272, 275
BstNI	CCWGG	2 cut(s)	7, 441
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	5, 439
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	67, 238, 287, 366
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	2 cut(s)	13, 447
BstYI	RGATCY	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	310, 404
BsuTUI	ATCGAT	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	402
ClaI	ATCGAT	1 cut(s)	22
CviAII	CATG	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	4 cut(s)	21, 25, 91, 195
DpnII	GATC	4 cut(s)	19, 23, 89, 193
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco31I	GGTCTC	2 cut(s)	114, 382
Eco57I	CTGAAG	1 cut(s)	410
Eco88I	CYCGRG	2 cut(s)	49, 151
Eco91I	GGTNACC	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	5, 439
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	95, 210, 294, 477
FatI	CATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	5 cut(s)	81, 252, 267, 276, 380
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	5 cut(s)	81, 252, 267, 276, 380
FspBI	CTAG	2 cut(s)	87, 333
GluI	GCNGC	5 cut(s)	81, 252, 267, 276, 380
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	2 cut(s)	102, 267
HaeIII	GGCC	2 cut(s)	310, 404
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	2 cut(s)	215, 469
HphI	GGTGA	2 cut(s)	36, 188
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	193, 235, 387, 457
Hpy188III	TCNNGA	4 cut(s)	51, 87, 119, 153
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	150, 331, 337
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 272, 275
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	19, 23, 89, 193
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	19, 84, 132, 231, 285, 426, 453, 469
Lsp1109I	GCAGC	4 cut(s)	67, 238, 287, 366
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	87, 333
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	4 cut(s)	21, 25, 91, 195
MboI	GATC	4 cut(s)	19, 23, 89, 193
MboII	GAAGA	4 cut(s)	29, 359, 416, 502
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	3 cut(s)	10, 239, 315
MnlI	CCTC	6 cut(s)	58, 123, 126, 232, 393, 472
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	2 cut(s)	29, 278
MspR9I	CCNGG	2 cut(s)	7, 441
MvaI	CCWGG	2 cut(s)	7, 441
MwoI	GCNNNNNNNGC	3 cut(s)	251, 272, 275
NdeII	GATC	4 cut(s)	19, 23, 89, 193
NlaIII	CATG	1 cut(s)	212
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	42
OliI	CACNNNNGTG	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	49
PasI	CCCWGGG	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	215, 469
PkrI	GCNGC	5 cut(s)	82, 253, 268, 277, 381
Ppu21I	YACGTR	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	5, 439
PspEI	GGTNACC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	5, 439
PspPI	GGNCC	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	5 cut(s)	81, 252, 267, 276, 380
Sau3AI	GATC	4 cut(s)	19, 23, 89, 193
Sau96I	GGNCC	1 cut(s)	402
ScrFI	CCNGG	2 cut(s)	7, 441
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	10, 239, 315
SsiI	CCGC	2 cut(s)	27, 267
SspMI	CTAG	2 cut(s)	87, 333
StyD4I	CCNGG	2 cut(s)	5, 439
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	22, 50, 213
TasI	AATT	3 cut(s)	10, 239, 315
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	215, 469
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	4 cut(s)	80, 251, 275, 379
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	309, 380
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	2 cut(s)	10, 315
XbaI	TCTAGA	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	49
XspI	CTAG	2 cut(s)	87, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.