Prupe.7G167800_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
17086545 .. 17092921
6377 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G167800.1

Sequence Viewer

Length: 1473 bp
ATGGGCCGAGCAGAGATTGACACCAGAGCACCTTTCAAATCAGTCAAAGAAGCAGTCTTGTTGTTTGGGGAAAGAGTTTTGGTTGGAGAAATATATGCCAACAAGCTCAAAGAGATTGGAGCTGCAGGGCATGCTGCTTCTGCTCAATCAACAATTGGGGTCTTGGAAGCTGAGCTTGAAGAAACAAAGCGAAATCTTCAGAAAGTTAGAGAAGAAAACAAGATAATGGCATACTGCATAAAGTCACTAAGGGATGATCTTGACCGTGCAAAGAAAGAGCTGCACAAGTACTTGAAGGCAAGAGAGTTTGATCAGAAGGACCCAGTTGATCCTGAGATTGAAGAAGACGACCTTAAATTCATTGAGGATGGCGCCGCGAAGTTTGAAACCAAGACCATGTTGAGCCAAGACGCAGAGGAATTGGTGCAGAAGAAAAGATATGTGAAATTTGCAAGTCCTCCTACACTGGCCCAAGTCATTGGCGGGATTTCAGAAAGAGAAGACAAGGTCTCTATGGAGCTGACAGAGGAAATTCTTCAAAGCATGGAAGTTGGGTTAGCTTTTAGAGACTATAGTGGTAGAATTAGTTCGTTGGATTTTCACAAGGCGACTAGTTATGTAGTGACTGCTAGTGATGATGAGTCGATTCGTTTATATGATGTCTCCACTGCAACATGCTTGAAGACCATCAACAGCAAAAAGTATGGAGTTGATTTGGTTTGCTTTACTTCTCATCCTACCACAGTTATATACTCTTCCAAAAATGGCTGGGATGAATCCTTGAGGCTTCTCTCATTGCATGACAACAAGTACTTGCGTTATTTCAAAGGCCACCATGACAGGGTAGTCTCACTTAGCTTGTGTTCTCGCAAAGACTGCTTCATCTCCGGTTCTCTTGATAGAACTGTTCTGCTTTGGGATCAACGGGCTGAGAAGTGTCAGGGTCTCTTACGCGTACAAGGAAGGCCTGCCACAACTTATGATGATCAAGGGCTAGTTTTTGCAGTTGCCTTTGGTGGATACATAAGAATGTTTGATGCCCGCAAGTATGAAAAGGGTCCTTTTGATATCTTTTCTGTTGGGGGAGATATGTCTGATGCAAATGTTGTAAAGTTCAGTAACGATGGGAGACTTGTGCTTTTAACAACCACAGATGGACATATTCATGTTCTTGATTCGTTCCGTGGCACACTTTTATCCACATATAATGTAAAGCCAGTCTCCAGCAGTTCAACATTAGAGGCTTCTTTCAGCCCAGAGGGGATGTTTGTCATATCAGGTTCAGGTGATGGTAGTGTCTATGCGTGGAGTGTTCGGAGTGGGAAAGAAGTCACAAGTTGGATGAGCACTGAAAATGAACCTCCTGTTGTCAAATGGGCTCCGGGAAACCTCATGTTTGCAACTGGATCTTCTGAGCTATCATTTTGGATTCCAGATTTGTCTAAATTGGGAGCTTATGTTGGAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

54.66

Weight (kDa)

5.85

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 2 cut(s) 377, 954
AciI CCGC 3 cut(s) 375, 483, 1042
AclWI GGATC 3 cut(s) 323, 927, 1414
AcsI RAATTY 3 cut(s) 356, 446, 531
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 3 cut(s) 290, 812, 957
AfiI CCNNNNNNNGG 1 cut(s) 841
AflIII ACRYGT 1 cut(s) 952
AgsI TTSAA 9 cut(s) 37, 179, 295, 341, 386, 539, 682, 826, 1233
AhlI ACTAGT 1 cut(s) 611
Alw21I GWGCWC 2 cut(s) 31, 1349
Alw26I GTCTC 7 cut(s) 514, 561, 667, 853, 950, 1123, 1225
AlwI GGATC 3 cut(s) 323, 927, 1414
AoxI GGCC 4 cut(s) 4, 468, 829, 965
ApeKI GCWGC 3 cut(s) 122, 134, 280
ApoI RAATTY 3 cut(s) 356, 446, 531
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
Asp700I GAANNNNTTC 2 cut(s) 534, 586
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 4 cut(s) 4, 319, 469, 1058
AsuC2I CCSGG 1 cut(s) 1383
AsuHPI GGTGA 1 cut(s) 1298
AvaII GGWCC 2 cut(s) 319, 1058
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 1381
BbsI GAAGAC 3 cut(s) 351, 507, 689
Bbv12I GWGCWC 2 cut(s) 31, 1349
BbvI GCAGC 3 cut(s) 109, 121, 267
BccI CCATC 5 cut(s) 362, 695, 1118, 1148, 1283
BciVI GTATCC 1 cut(s) 1013
BclI TGATCA 2 cut(s) 310, 985
BcnI CCSGG 1 cut(s) 1383
BcoDI GTCTC 7 cut(s) 514, 561, 667, 853, 950, 1123, 1225
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 3 cut(s) 612, 630, 995
BfmI CTRYAG 2 cut(s) 123, 571
BfoI RGCGCY 1 cut(s) 375
BfuI GTATCC 1 cut(s) 1013
BisI GCNGC 4 cut(s) 123, 135, 281, 375
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 4 cut(s) 124, 136, 282, 376
BmcAI AGTACT 2 cut(s) 290, 812
Bme1390I CCNGG 1 cut(s) 1383
Bme18I GGWCC 2 cut(s) 319, 1058
BmgT120I GGNCC 4 cut(s) 4, 319, 469, 1058
BmiI GGNNCC 4 cut(s) 321, 373, 1059, 1380
BmrFI CCNGG 1 cut(s) 1383
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 1027, 1087
BmuI ACTGGG 1 cut(s) 317
BpiI GAAGAC 3 cut(s) 351, 507, 689
BpmI CTGGAG 1 cut(s) 1207
Bpu1102I GCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 802
BpuMI CCSGG 1 cut(s) 1383
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 2 cut(s) 514, 950
BsaJI CCNNGG 1 cut(s) 1183
BsaWI WCCGGW 1 cut(s) 887
BsaXI ACNNNNNCTCC 2 cut(s) 1443, 1473
Bsc4I CCNNNNNNNGG 1 cut(s) 841
Bse1I ACTGG 4 cut(s) 323, 471, 1217, 1408
Bse3DI GCAATG 1 cut(s) 794
BseDI CCNNGG 1 cut(s) 1183
BseGI GGATG 6 cut(s) 259, 373, 733, 778, 1269, 1347
BseLI CCNNNNNNNGG 1 cut(s) 841
BseMI GCAATG 1 cut(s) 794
BseMII CTCAG 4 cut(s) 162, 324, 921, 1404
BseNI ACTGG 4 cut(s) 323, 471, 1217, 1408
BseXI GCAGC 3 cut(s) 109, 121, 267
BseYI CCCAGC 1 cut(s) 768
BsgI GTGCAG 2 cut(s) 266, 446
Bsh1236I CGCG 2 cut(s) 377, 954
BshFI GGCC 4 cut(s) 6, 470, 831, 967
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 31, 1349
BsiSI CCGG 2 cut(s) 888, 1382
BslI CCNNNNNNNGG 1 cut(s) 841
BsmAI GTCTC 7 cut(s) 514, 561, 667, 853, 950, 1123, 1225
BsnI GGCC 4 cut(s) 6, 470, 831, 967
Bso31I GGTCTC 2 cut(s) 514, 950
Bsp1286I GDGCHC 3 cut(s) 31, 1349, 1381
Bsp143I GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 3 cut(s) 375, 483, 1042
BspANI GGCC 4 cut(s) 6, 470, 831, 967
BspCNI CTCAG 4 cut(s) 163, 325, 922, 1405
BspFNI CGCG 2 cut(s) 377, 954
BspLI GGNNCC 4 cut(s) 321, 373, 1059, 1380
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 3 cut(s) 323, 927, 1414
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 2 cut(s) 514, 950
BsrDI GCAATG 1 cut(s) 794
BsrI ACTGG 4 cut(s) 323, 471, 1217, 1408
BssECI CCNNGG 1 cut(s) 1183
BssMI GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
BssNI GRCGYC 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 266, 745, 907
Bst6I CTCTTC 1 cut(s) 760
BstACI GRCGYC 1 cut(s) 372
BstAPI GCANNNNNTGC 2 cut(s) 131, 876
BstC8I GCNNGC 3 cut(s) 132, 969, 1042
BstDEI CTNAG 6 cut(s) 171, 248, 333, 854, 930, 1413
BstDSI CCRYGG 1 cut(s) 1183
BstF5I GGATG 6 cut(s) 259, 373, 733, 778, 1269, 1347
BstFNI CGCG 2 cut(s) 377, 954
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 6 cut(s) 259, 313, 331, 922, 988, 1409
BstMAI GTCTC 7 cut(s) 514, 561, 667, 853, 950, 1123, 1225
BstMBI GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
BstMWI GCNNNNNNNGC 3 cut(s) 131, 140, 876
BstNSI RCATGY 2 cut(s) 134, 678
BstSCI CCNGG 1 cut(s) 1381
BstSFI CTRYAG 2 cut(s) 123, 571
BstUI CGCG 2 cut(s) 377, 954
BstV1I GCAGC 3 cut(s) 109, 121, 267
BstV2I GAAGAC 3 cut(s) 351, 507, 689
BstX2I RGATCY 1 cut(s) 1406
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 1406
BsuI GTATCC 1 cut(s) 1013
BsuRI GGCC 4 cut(s) 6, 470, 831, 967
BtgI CCRYGG 1 cut(s) 1183
BtsCI GGATG 6 cut(s) 259, 373, 733, 778, 1269, 1347
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 3 cut(s) 464, 666, 1347
Cac8I GCNNGC 3 cut(s) 132, 969, 1042
CfoI GCGC 1 cut(s) 374
Cfr13I GGNCC 4 cut(s) 4, 319, 469, 1058
CseI GACGC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 289, 811, 956
CviAII CATG 8 cut(s) 131, 397, 544, 675, 800, 836, 1166, 1393
CviQI GTAC 3 cut(s) 289, 811, 956
DdeI CTNAG 6 cut(s) 171, 248, 333, 854, 930, 1413
DinI GGCGCC 1 cut(s) 373
DpnI GATC 6 cut(s) 258, 312, 330, 921, 987, 1408
DpnII GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
DrdI GACNNNNNNGTC 1 cut(s) 845
DseDI GACNNNNNNGTC 1 cut(s) 845
Eam1104I CTCTTC 1 cut(s) 760
EarI CTCTTC 1 cut(s) 760
Eco147I AGGCCT 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 1381
Eco31I GGTCTC 2 cut(s) 514, 950
Eco32I GATATC 1 cut(s) 1069
Eco47I GGWCC 2 cut(s) 319, 1058
Eco57I CTGAAG 1 cut(s) 182
EcoO109I RGGNCCY 2 cut(s) 319, 1058
EcoRV GATATC 1 cut(s) 1069
EcoT38I GRGCYC 1 cut(s) 1381
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
FaeI CATG 8 cut(s) 134, 400, 547, 678, 803, 839, 1169, 1396
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 336, 368
FatI CATG 8 cut(s) 130, 396, 543, 674, 799, 835, 1165, 1392
FauI CCCGC 2 cut(s) 476, 1049
FbaI TGATCA 2 cut(s) 310, 985
Fnu4HI GCNGC 4 cut(s) 123, 135, 281, 375
FokI GGATG 6 cut(s) 266, 380, 720, 785, 1276, 1354
FriOI GRGCYC 1 cut(s) 1381
Fsp4HI GCNGC 4 cut(s) 123, 135, 281, 375
FspBI CTAG 3 cut(s) 612, 630, 995
GlaI GCGC 1 cut(s) 373
GluI GCNGC 4 cut(s) 123, 135, 281, 375
GsaI CCCAGC 1 cut(s) 772
GsuI CTGGAG 1 cut(s) 1207
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 4 cut(s) 6, 470, 831, 967
HapII CCGG 2 cut(s) 888, 1382
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 8 cut(s) 134, 400, 547, 678, 803, 839, 1169, 1396
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 5 cut(s) 641, 646, 776, 1175, 1429
HpaII CCGG 2 cut(s) 888, 1382
HphI GGTGA 1 cut(s) 1298
Hpy188I TCNGA 6 cut(s) 201, 315, 493, 1096, 1317, 1414
Hpy188III TCNNGA 5 cut(s) 260, 332, 896, 1172, 1433
HpyAV CCTTC 4 cut(s) 289, 310, 957, 1458
HpyCH4III ACNGT 3 cut(s) 266, 745, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 140, 876
HpyF3I CTNAG 6 cut(s) 171, 248, 333, 854, 930, 1413
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 8 cut(s) 134, 400, 547, 678, 803, 839, 1169, 1396
HspAI GCGC 1 cut(s) 372
KasI GGCGCC 1 cut(s) 371
Ksp22I TGATCA 2 cut(s) 310, 985
Kzo9I GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
LmnI GCTCC 4 cut(s) 119, 517, 1384, 1451
Lsp1109I GCAGC 3 cut(s) 109, 121, 267
LweI GCATC 2 cut(s) 1027, 1087
MaeI CTAG 3 cut(s) 612, 630, 995
MaeIII GTNAC 4 cut(s) 243, 622, 1118, 1330
MalI GATC 6 cut(s) 258, 312, 330, 921, 987, 1408
MboI GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 1406
MhlI GDGCHC 3 cut(s) 31, 1349, 1381
MluCI AATT 7 cut(s) 153, 356, 419, 446, 531, 582, 1445
MluI ACGCGT 1 cut(s) 952
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 4 cut(s) 64, 573, 1319, 1441
MnlI CCTC 9 cut(s) 358, 409, 468, 520, 777, 1234, 1252, 1371, 1400
MroXI GAANNNNTTC 2 cut(s) 534, 586
MseI TTAA 2 cut(s) 354, 1142
MslI CAYNNNNRTG 2 cut(s) 1028, 1164
MspI CCGG 2 cut(s) 888, 1382
MspR9I CCNGG 1 cut(s) 1383
MunI CAATTG 1 cut(s) 153
MvnI CGCG 2 cut(s) 377, 954
MwoI GCNNNNNNNGC 3 cut(s) 131, 140, 876
NarI GGCGCC 1 cut(s) 372
NciI CCSGG 1 cut(s) 1383
NdeII GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
NlaIII CATG 8 cut(s) 134, 400, 547, 678, 803, 839, 1169, 1396
NlaIV GGNNCC 4 cut(s) 321, 373, 1059, 1380
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 3 cut(s) 243, 622, 1330
NspI RCATGY 2 cut(s) 134, 678
PaeI GCATGC 1 cut(s) 134
PceI AGGCCT 1 cut(s) 967
PdmI GAANNNNTTC 2 cut(s) 534, 586
PfeI GAWTC 4 cut(s) 646, 776, 1175, 1429
PflFI GACNNNGTC 1 cut(s) 506
PfoI TCCNGGA 1 cut(s) 1381
PkrI GCNGC 4 cut(s) 124, 136, 282, 376
PleI GAGTC 1 cut(s) 649
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 649
PpuMI RGGWCCY 2 cut(s) 319, 1058
Psp5II RGGWCCY 2 cut(s) 319, 1058
PspFI CCCAGC 1 cut(s) 768
PspN4I GGNNCC 4 cut(s) 321, 373, 1059, 1380
PspPI GGNCC 4 cut(s) 4, 319, 469, 1058
PspPPI RGGWCCY 2 cut(s) 319, 1058
PsrI GAACNNNNNNTAC 2 cut(s) 571, 603
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 1406
PsyI GACNNNGTC 1 cut(s) 506
RsaI GTAC 3 cut(s) 290, 812, 957
RsaNI GTAC 3 cut(s) 289, 811, 956
RseI CAYNNNNRTG 2 cut(s) 1028, 1164
SaqAI TTAA 2 cut(s) 354, 1142
SatI GCNGC 4 cut(s) 123, 135, 281, 375
Sau3AI GATC 6 cut(s) 256, 310, 328, 919, 985, 1406
Sau96I GGNCC 4 cut(s) 4, 319, 469, 1058
ScaI AGTACT 2 cut(s) 290, 812
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 1383
SduI GDGCHC 3 cut(s) 31, 1349, 1381
SfaNI GCATC 2 cut(s) 1027, 1087
SfcI CTRYAG 2 cut(s) 123, 571
SfoI GGCGCC 1 cut(s) 373
SinI GGWCC 2 cut(s) 319, 1058
SmiMI CAYNNNNRTG 2 cut(s) 1028, 1164
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
SpeI ACTAGT 1 cut(s) 611
SphI GCATGC 1 cut(s) 134
Sse9I AATT 7 cut(s) 153, 356, 419, 446, 531, 582, 1445
SseBI AGGCCT 1 cut(s) 967
SsiI CCGC 3 cut(s) 375, 483, 1042
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 3 cut(s) 612, 630, 995
StuI AGGCCT 1 cut(s) 967
StyD4I CCNGG 1 cut(s) 1381
TaaI ACNGT 3 cut(s) 266, 745, 907
TaqI TCGA 1 cut(s) 644
TasI AATT 7 cut(s) 153, 356, 419, 446, 531, 582, 1445
TatI WGTACW 2 cut(s) 288, 810
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 4 cut(s) 646, 776, 1175, 1429
Tru1I TTAA 2 cut(s) 354, 1142
Tru9I TTAA 2 cut(s) 354, 1142
TscAI CASTG 3 cut(s) 471, 673, 1354
TseFI GTSAC 3 cut(s) 243, 622, 1330
TseI GCWGC 3 cut(s) 122, 134, 280
Tsp45I GTSAC 3 cut(s) 243, 622, 1330
TspDTI ATGAA 6 cut(s) 349, 789, 871, 1065, 1154, 1371
TspGWI ACGGA 1 cut(s) 1172
TspRI CASTG 3 cut(s) 471, 673, 1354
Tth111I GACNNNGTC 1 cut(s) 506
VpaK11BI GGWCC 2 cut(s) 319, 1058
XapI RAATTY 3 cut(s) 356, 446, 531
XceI RCATGY 2 cut(s) 134, 678
XmnI GAANNNNTTC 2 cut(s) 534, 586
XspI CTAG 3 cut(s) 612, 630, 995
ZrmI AGTACT 2 cut(s) 290, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.