Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005287

Physical Location & Seq

Genomic Coordinates Reverse (-)

8955183 .. 8958749

Gene Structure 3567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGGAGGATCGGTCCATGCAACGCCGAAAAGTTGTTTTCCGGCCGGGTCCGATCGCATGGAGTTGGGGCTTCTTCGATCCAGTGCCGGGGGCAGCGGGGGCAAGGCGATCATGCCGAGTCGCCGGGCGGGGCGGGCGACCCCGGGAGGACCGGGTCCACGGCGGAGAAGGCCGGAGGAGGAGAAAAAGCCGGCGTAAGCAAAAAGTATGGGGTTGATTTGGTTTGCTTTACTTCCATCCTACCACGGTTATATACTCATCGAAAAATGGCTAGGATGTTATCCATGTACAATGTAAAGCTTGTCTCAAGCAATGCTACATTAGAGGCTTCTTTTAGCCCAGATGGGATGTTTGTTATGTCGGCTCAAAGAGAGAAGATAACTGAAACTAATCAAGGCTCCAAACAAGGACAGCAGCTGCGGTGTCGAGAAAATGCCATAGTTCGAGTTTTAAATCGAGGGTCTTTTGCCATTCAGTATAGCTCGGTCATGTCGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCCGATAAGGTTTTGGAGTTTTCTTTTGTGACATATGTTCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

206

Amino Acids

22.27

Weight (kDa)

9.6

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66240 AT5G66240 AT5G66240
fragaria_vesca	FvH4_1g11900 FvH4_1g11900 FvH4_1g11900
malus_domestica	MD02G1132900.v1.1 MD15G1245700.v1.1
prunus_persica	Prupe.7G167800_v2.0.a1
pyrus_communis	pycom02g10440 pycom15g21640
rosa_chinensis	RchiOBHm_Chr1g0360691 RchiOBHm_Chr2g0099491 RchiOBHm_Chr6g0289991
rosa_laevigata	RLG00000016887 RLG00000034249
rosa_multiflora	Rmu_sc0002542.1_g000016
rosa_roxburghii	Rroxscaffold_2G00143030 Rroxscaffold_3G00225660 Rroxscaffold_3G00263950 Rroxscaffold_7G00208720
rosa_rugosa	Rorug02G0080100 Rorug02G0080100 Rorug02G0080100
rosa_samantha	Rh2BG133200 Rh2CG133800 Rh2DG134100
rosa_wichuraiana	Rw2G010020 Rw4G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	97, 129, 134, 164, 421
AclWI	GGATC	2 cut(s)	17, 73
AcoI	YGGCCR	1 cut(s)	43
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	614
AluBI	AGCT	4 cut(s)	301, 418, 483, 544
AluI	AGCT	4 cut(s)	301, 418, 483, 544
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	17, 73
AlwNI	CAGNNNCTG	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	43, 171, 496
ApeKI	GCWGC	4 cut(s)	94, 415, 418, 527
AspS9I	GGNCC	5 cut(s)	14, 49, 150, 156, 496
AsuC2I	CCSGG	6 cut(s)	47, 89, 126, 144, 145, 154
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	4 cut(s)	14, 49, 150, 156
BbvI	GCAGC	4 cut(s)	106, 405, 427, 514
BccI	CCATC	3 cut(s)	245, 338, 559
BceAI	ACGGC	1 cut(s)	177
BcnI	CCSGG	6 cut(s)	47, 89, 126, 144, 145, 154
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	273, 545
BisI	GCNGC	4 cut(s)	95, 416, 419, 528
BlsI	GCNGC	4 cut(s)	96, 417, 420, 529
Bme1390I	CCNGG	6 cut(s)	47, 89, 126, 144, 145, 154
Bme18I	GGWCC	4 cut(s)	14, 49, 150, 156
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	5 cut(s)	14, 49, 150, 156, 496
BmiI	GGNNCC	3 cut(s)	50, 157, 400
BmrFI	CCNGG	6 cut(s)	47, 89, 126, 144, 145, 154
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	6 cut(s)	47, 89, 126, 144, 145, 154
BsaJI	CCNNGG	6 cut(s)	88, 142, 143, 159, 245, 499
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	319
BseDI	CCNNGG	6 cut(s)	88, 142, 143, 159, 245, 499
BseGI	GGATG	4 cut(s)	237, 282, 354, 570
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	192, 195
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	4 cut(s)	106, 405, 427, 514
Bsh1285I	CGRYCG	2 cut(s)	46, 56
BshFI	GGCC	3 cut(s)	45, 173, 498
BsiEI	CGRYCG	2 cut(s)	46, 56
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	8 cut(s)	42, 46, 88, 125, 144, 153, 174, 192
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	45, 173, 498
BsoBI	CYCGRG	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	9, 53, 78, 109
BspACI	CCGC	5 cut(s)	97, 129, 134, 164, 421
BspANI	GGCC	3 cut(s)	45, 173, 498
BspHI	TCATGA	1 cut(s)	617
BspLI	GGNNCC	3 cut(s)	50, 157, 400
BspPI	GGATC	2 cut(s)	17, 73
BspQI	GCTCTTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	6 cut(s)	88, 142, 143, 159, 245, 499
BssMI	GATC	4 cut(s)	9, 53, 78, 109
BssT1I	CCWWGG	1 cut(s)	499
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	136, 193, 572
BstDSI	CCRYGG	2 cut(s)	159, 245
BstF5I	GGATG	4 cut(s)	237, 282, 354, 570
BstKTI	GATC	4 cut(s)	12, 56, 81, 112
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	4 cut(s)	9, 53, 78, 109
BstMCI	CGRYCG	2 cut(s)	46, 56
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 135, 170
BstSCI	CCNGG	6 cut(s)	45, 87, 124, 142, 143, 152
BstV1I	GCAGC	4 cut(s)	106, 405, 427, 514
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	45, 173, 498
BtgI	CCRYGG	2 cut(s)	159, 245
BtsCI	GGATG	4 cut(s)	237, 282, 354, 570
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	136, 193, 572
CaiI	CAGNNNCTG	1 cut(s)	418
CciI	TCATGA	1 cut(s)	617
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	5 cut(s)	14, 49, 150, 156, 496
Cfr9I	CCCGGG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	6 cut(s)	18, 59, 113, 286, 490, 618
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	4 cut(s)	11, 55, 80, 111
DpnII	GATC	4 cut(s)	9, 53, 78, 109
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	179
EclXI	CGGCCG	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	499
Eco47I	GGWCC	4 cut(s)	14, 49, 150, 156
Eco52I	CGGCCG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	6 cut(s)	21, 62, 116, 289, 493, 621
FatI	CATG	6 cut(s)	17, 58, 112, 285, 489, 617
FauI	CCCGC	3 cut(s)	90, 122, 127
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	95, 416, 419, 528
FokI	GGATG	4 cut(s)	224, 289, 361, 577
Fsp4HI	GCNGC	4 cut(s)	95, 416, 419, 528
FspBI	CTAG	2 cut(s)	273, 545
GluI	GCNGC	4 cut(s)	95, 416, 419, 528
HaeIII	GGCC	3 cut(s)	45, 173, 498
HapII	CCGG	8 cut(s)	42, 46, 88, 125, 144, 153, 174, 192
Hin1II	CATG	6 cut(s)	21, 62, 116, 289, 493, 621
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	8 cut(s)	42, 46, 88, 125, 144, 153, 174, 192
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	428, 618
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 135, 170
Hsp92II	CATG	6 cut(s)	21, 62, 116, 289, 493, 621
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	9, 53, 78, 109
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	4 cut(s)	106, 405, 427, 514
MaeI	CTAG	2 cut(s)	273, 545
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	4 cut(s)	11, 55, 80, 111
MboI	GATC	4 cut(s)	9, 53, 78, 109
MboII	GAAGA	3 cut(s)	66, 388, 551
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	141, 170, 173, 319, 452
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	1 cut(s)	452
MspA1I	CMGCKG	2 cut(s)	97, 418
MspI	CCGG	8 cut(s)	42, 46, 88, 125, 144, 153, 174, 192
MspR9I	CCNGG	6 cut(s)	47, 89, 126, 144, 145, 154
MwoI	GCNNNNNNNGC	3 cut(s)	100, 135, 170
NaeI	GCCGGC	1 cut(s)	193
NciI	CCSGG	6 cut(s)	47, 89, 126, 144, 145, 154
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	4 cut(s)	9, 53, 78, 109
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	6 cut(s)	21, 62, 116, 289, 493, 621
NlaIV	GGNNCC	3 cut(s)	50, 157, 400
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	601
PagI	TCATGA	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	534
PdiI	GCCGGC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	96, 417, 420, 529
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	50, 157, 400
PspPI	GGNCC	5 cut(s)	14, 49, 150, 156, 496
PstNI	CAGNNNCTG	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	418
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	4 cut(s)	95, 416, 419, 528
Sau3AI	GATC	4 cut(s)	9, 53, 78, 109
Sau96I	GGNCC	5 cut(s)	14, 49, 150, 156, 496
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	6 cut(s)	47, 89, 126, 144, 145, 154
SetI	ASST	5 cut(s)	303, 420, 485, 546, 585
SinI	GGWCC	4 cut(s)	14, 49, 150, 156
SmaI	CCCGGG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SsiI	CCGC	5 cut(s)	97, 129, 134, 164, 421
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	2 cut(s)	273, 545
StyD4I	CCNGG	6 cut(s)	45, 87, 124, 142, 143, 152
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	77, 262, 427, 445, 457
TaqII	GACCGA	1 cut(s)	475
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	4 cut(s)	94, 415, 418, 527
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	1 cut(s)	552
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	1 cut(s)	89
Tth111I	GACNNNGTC	1 cut(s)	154
VpaK11BI	GGWCC	4 cut(s)	14, 49, 150, 156
XmaI	CCCGGG	1 cut(s)	143
XspI	CTAG	2 cut(s)	273, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.