Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005287

Physical Location & Seq

Genomic Coordinates Reverse (-)

58831036 .. 58834479

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGAGAGAAGAAGACGATTCGGTGAGCGAGGTTCTCGGAGATCGATTCGGACTCTCCACCATCTCTATCGGCGATGCCAAAGTTCTCCAAGCAGTGAAGAGAAGTGGCATGGAGATATCGGAACCTGTGGTGGCTTGCATTTCCGACTTGGCCTTCAAATTTATTGCATGGCTGATTTTGATATTTAAATCTTCTTTGGGTCCCTTTGATATATTTTCTGTTGGGGGCGGAGATATGTCCGATGCAAATGTTGTGAAGTTCGGGAATGATGGGAGACTTATGCTGTTATCTATTTCAAATGGACATATTCATTTATCCATGTACAATGTAAAGCTTGTCTCAAGCAATGCTACATTAGAGGCTTCTTTTAGCCTAGATGAGATGTTTGTTATGTCGGTATGCTTGCTCAATTTCTCTGGTGTGAAATTTCTTGCAACGAAATTGGTCCAAACAAGGATAGCGGCTGCGGTGTCGAGAAAATGCCATAGTTCGAGTTTTAAATCGAGGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATAGGAAAGCTCGATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

201

Amino Acids

21.9

Weight (kDa)

6.83

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66240 AT5G66240 AT5G66240
fragaria_vesca	FvH4_1g11900 FvH4_1g11900 FvH4_1g11900
malus_domestica	MD02G1132900.v1.1 MD15G1245700.v1.1
prunus_persica	Prupe.7G167800_v2.0.a1
pyrus_communis	pycom02g10440 pycom15g21640
rosa_chinensis	RchiOBHm_Chr1g0360691 RchiOBHm_Chr2g0099491 RchiOBHm_Chr6g0289991
rosa_laevigata	RLG00000016887 RLG00000034249
rosa_multiflora	Rmu_sc0002542.1_g000016
rosa_roxburghii	Rroxscaffold_2G00143030 Rroxscaffold_3G00225660 Rroxscaffold_3G00263950 Rroxscaffold_7G00208720
rosa_rugosa	Rorug02G0080100 Rorug02G0080100 Rorug02G0080100
rosa_samantha	Rh2BG133200 Rh2CG133800 Rh2DG134100
rosa_wichuraiana	Rw2G010020 Rw4G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	231, 464, 470
AcsI	RAATTY	2 cut(s)	161, 428
AfaI	GTAC	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	160, 300
AluBI	AGCT	3 cut(s)	337, 559, 589
AluI	AGCT	3 cut(s)	337, 559, 589
Alw26I	GTCTC	2 cut(s)	271, 346
AoxI	GGCC	2 cut(s)	153, 511
ApeKI	GCWGC	2 cut(s)	467, 542
ApoI	RAATTY	2 cut(s)	161, 428
AspS9I	GGNCC	3 cut(s)	203, 448, 511
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	203, 448
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	454, 529
BccI	CCATC	2 cut(s)	71, 266
BcoDI	GTCTC	2 cut(s)	271, 346
BfaI	CTAG	3 cut(s)	377, 560, 604
BisI	GCNGC	3 cut(s)	465, 468, 543
BlsI	GCNGC	3 cut(s)	466, 469, 544
Bme18I	GGWCC	2 cut(s)	203, 448
BmgT120I	GGNCC	3 cut(s)	203, 448, 511
BmiI	GGNNCC	4 cut(s)	126, 204, 205, 512
BmsI	GCATC	2 cut(s)	67, 235
BpiI	GAAGAC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	328
Bsa29I	ATCGAT	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	355
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	514
BseMI	GCAATG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	454, 529
BshFI	GGCC	2 cut(s)	155, 513
BshVI	ATCGAT	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	271, 346
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	155, 513
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	43, 600
BspACI	CCGC	3 cut(s)	231, 464, 470
BspANI	GGCC	2 cut(s)	155, 513
BspDI	ATCGAT	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	126, 204, 205, 512
BspQI	GCTCTTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	2 cut(s)	43, 600
BssT1I	CCWWGG	1 cut(s)	514
Bst6I	CTCTTC	2 cut(s)	95, 549
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	139, 407
BstKTI	GATC	2 cut(s)	46, 603
BstMAI	GTCTC	2 cut(s)	271, 346
BstMBI	GATC	2 cut(s)	43, 600
BstV1I	GCAGC	2 cut(s)	454, 529
BstV2I	GAAGAC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	155, 513
BsuTUI	ATCGAT	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	139, 407
Cfr13I	GGNCC	3 cut(s)	203, 448, 511
ClaI	ATCGAT	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	112, 171, 322
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	2 cut(s)	45, 602
DpnII	GATC	2 cut(s)	43, 600
DraI	TTTAAA	2 cut(s)	190, 502
Eam1104I	CTCTTC	2 cut(s)	95, 549
EarI	CTCTTC	2 cut(s)	95, 549
EciI	GGCGGA	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	203, 448
EcoO109I	RGGNCCY	2 cut(s)	203, 511
EcoRV	GATATC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	514
FaeI	CATG	3 cut(s)	115, 174, 325
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	3 cut(s)	111, 170, 321
Fnu4HI	GCNGC	3 cut(s)	465, 468, 543
Fsp4HI	GCNGC	3 cut(s)	465, 468, 543
FspBI	CTAG	3 cut(s)	377, 560, 604
GluI	GCNGC	3 cut(s)	465, 468, 543
HaeIII	GGCC	2 cut(s)	155, 513
Hin1II	CATG	3 cut(s)	115, 174, 325
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	3 cut(s)	20, 48, 54
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	5 cut(s)	41, 53, 124, 148, 244
Hpy188III	TCNNGA	2 cut(s)	265, 477
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	141, 170, 248, 437
Hsp92II	CATG	3 cut(s)	115, 174, 325
KflI	GGGWCCC	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	43, 600
LguI	GCTCTTC	1 cut(s)	549
LpnPI	CCDG	2 cut(s)	141, 405
Lsp1109I	GCAGC	2 cut(s)	454, 529
LweI	GCATC	2 cut(s)	67, 235
MaeI	CTAG	3 cut(s)	377, 560, 604
MalI	GATC	2 cut(s)	45, 602
MboI	GATC	2 cut(s)	43, 600
MboII	GAAGA	5 cut(s)	23, 26, 112, 186, 566
MluCI	AATT	4 cut(s)	161, 412, 428, 443
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	25, 355, 501
MseI	TTAA	2 cut(s)	189, 501
NdeII	GATC	2 cut(s)	43, 600
NlaIII	CATG	3 cut(s)	115, 174, 325
NlaIV	GGNNCC	4 cut(s)	126, 204, 205, 512
PciSI	GCTCTTC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	20, 48
PkrI	GCNGC	3 cut(s)	466, 469, 544
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
PspN4I	GGNNCC	4 cut(s)	126, 204, 205, 512
PspPI	GGNCC	3 cut(s)	203, 448, 511
PspPPI	RGGWCCY	1 cut(s)	203
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	189, 501
SatI	GCNGC	3 cut(s)	465, 468, 543
Sau3AI	GATC	2 cut(s)	43, 600
Sau96I	GGNCC	3 cut(s)	203, 448, 511
SchI	GAGTC	1 cut(s)	48
SetI	ASST	6 cut(s)	36, 130, 339, 561, 591, 600
SfaNI	GCATC	2 cut(s)	67, 235
SinI	GGWCC	2 cut(s)	203, 448
SmiI	ATTTAAAT	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	4 cut(s)	161, 412, 428, 443
SsiI	CCGC	3 cut(s)	231, 464, 470
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	3 cut(s)	377, 560, 604
StyI	CCWWGG	1 cut(s)	514
SwaI	ATTTAAAT	1 cut(s)	190
TaqI	TCGA	5 cut(s)	46, 476, 494, 506, 591
TasI	AATT	4 cut(s)	161, 412, 428, 443
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	2 cut(s)	20, 48
Tru1I	TTAA	2 cut(s)	189, 501
Tru9I	TTAA	2 cut(s)	189, 501
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	2 cut(s)	467, 542
TspDTI	ATGAA	2 cut(s)	302, 567
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	203, 448
XapI	RAATTY	2 cut(s)	161, 428
XspI	CTAG	3 cut(s)	377, 560, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.