RLG00000034249

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005287
Physical Location & Seq
Forward (+)
39360113 .. 39363784
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034249

Sequence Viewer

Length: 837 bp
ATGCCGAAGTTTTCAATTCTAGTTCTCCAAGCAGCGAAGAGAAGCGGCATGGAGATATCGGAACCCGTGGTGGCTTGCATTTCCGAATTGGCCTTCAAGTTTACTGGTATTTTACTTAAGCTTTGCTGGTGTGCTTTGAAATTGAGAATCGAAAGTAATTTGAATGGTAGAATCAGTTCGTTGGATTTTCTCAAGGCTTCGAGTTATGTAGTGACTGCTAGTGATGATGAGTCTATTTGCTTGTGTGATGTCTCCACTGCAGCACCATTAACAGCAAAAAGTATGGGGTTGATTTGGTTTGCTTTACTTCCATCCTACCACGGTTATATACTCGTCGAAAAATGGCTAGGATGGGTTGTCCTACTTAGCTTGTGCTCCCGCAAAGAATGCTTCGTATCTGGTTCTCTTGATCGGACAGTTTTGCTTTGGGATCAACGAGTTGAGAAGCGCCAGGGTCTTTTGCGTGTACAAGGAAGGCCTGCCACAGCTTATAATGATCAGGGGTTAGTTTTTACAATTGCCTTTGTTGGATACATACAAATGTTTGATGCCCACGTGTATGAAAAGTTCAATATGTCTGATGCAAATGTTGTGAAGTTTGGGAATGATGGGAGACTTATGCTGTTAACTACTACAAATGGACATATTCATTTATCCATGTACAATGTAAAGCTTGTCTCAAGCAATGCTATATTAGAGGCTTCTTTTAGCCCAGATGGGATGTTTGTTATGTCAGGTCATTACTGGATACCTACTAGCAGGATCTACCATTGGACCCAGAGGCTTGAATTTTGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
WD40

Protein Analysis

279

Amino Acids

31.37

Weight (kDa)

8.04

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 45 - 222 6.6e-11 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AciI CCGC 2 cut(s) 45, 379
AclWI GGATC 2 cut(s) 438, 770
AcsI RAATTY 1 cut(s) 788
AcvI CACGTG 1 cut(s) 556
AfaI GTAC 2 cut(s) 468, 662
AflII CTTAAG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 6 cut(s) 15, 97, 139, 163, 571, 788
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 4 cut(s) 121, 369, 488, 673
AluI AGCT 4 cut(s) 121, 369, 488, 673
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 256, 607, 682
AlwI GGATC 2 cut(s) 438, 770
AoxI GGCC 3 cut(s) 90, 476, 794
ApeKI GCWGC 3 cut(s) 32, 260, 825
ApoI RAATTY 1 cut(s) 788
Asp700I GAANNNNTTC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 774
AvaII GGWCC 1 cut(s) 774
BbrPI CACGTG 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 3 cut(s) 44, 272, 812
BccI CCATC 4 cut(s) 319, 345, 602, 710
BciT130I CCWGG 1 cut(s) 452
BciVI GTATCC 2 cut(s) 524, 741
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 3 cut(s) 256, 607, 682
BfaI CTAG 4 cut(s) 20, 219, 347, 756
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 451
BfrI CTTAAG 1 cut(s) 116
BfuI GTATCC 2 cut(s) 524, 741
BisI GCNGC 4 cut(s) 33, 46, 261, 826
BlsI GCNGC 4 cut(s) 34, 47, 262, 827
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 774
BmgT120I GGNCC 1 cut(s) 774
BmiI GGNNCC 2 cut(s) 63, 776
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 2 cut(s) 538, 571
BpuEI CTTGAG 2 cut(s) 176, 664
BsaAI YACGTR 1 cut(s) 556
BsaJI CCNNGG 4 cut(s) 66, 319, 451, 797
Bse1I ACTGG 2 cut(s) 109, 749
Bse3DI GCAATG 1 cut(s) 691
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 66, 319, 451, 797
BseGI GGATG 3 cut(s) 311, 356, 726
BseMI GCAATG 1 cut(s) 691
BseNI ACTGG 2 cut(s) 109, 749
BseXI GCAGC 3 cut(s) 44, 272, 812
BshFI GGCC 3 cut(s) 92, 478, 796
BsiHKAI GWGCWC 1 cut(s) 377
BsmAI GTCTC 3 cut(s) 256, 607, 682
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 3 cut(s) 92, 478, 796
Bsp1286I GDGCHC 1 cut(s) 377
Bsp1407I TGTACA 2 cut(s) 466, 660
Bsp143I GATC 4 cut(s) 409, 430, 496, 762
BspACI CCGC 2 cut(s) 45, 379
BspANI GGCC 3 cut(s) 92, 478, 796
BspLI GGNNCC 2 cut(s) 63, 776
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 2 cut(s) 438, 770
BspTI CTTAAG 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 691
BsrGI TGTACA 2 cut(s) 466, 660
BsrI ACTGG 2 cut(s) 109, 749
BssECI CCNNGG 4 cut(s) 66, 319, 451, 797
BssMI GATC 4 cut(s) 409, 430, 496, 762
BssT1I CCWWGG 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 2 cut(s) 323, 418
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 387
BstAUI TGTACA 2 cut(s) 466, 660
BstBAI YACGTR 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 76, 480
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 2 cut(s) 66, 319
BstF5I GGATG 3 cut(s) 311, 356, 726
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 4 cut(s) 412, 433, 499, 765
BstMAI GTCTC 3 cut(s) 256, 607, 682
BstMBI GATC 4 cut(s) 409, 430, 496, 762
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 44, 272, 812
BstX2I RGATCY 1 cut(s) 762
BstYI RGATCY 1 cut(s) 762
BsuI GTATCC 2 cut(s) 524, 741
BsuRI GGCC 3 cut(s) 92, 478, 796
BtgI CCRYGG 2 cut(s) 66, 319
BtsCI GGATG 3 cut(s) 311, 356, 726
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 76, 480
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 774
Csp6I GTAC 2 cut(s) 467, 661
CviAII CATG 2 cut(s) 49, 658
CviQI GTAC 2 cut(s) 467, 661
DdeI CTNAG 1 cut(s) 365
DpnI GATC 4 cut(s) 411, 432, 498, 764
DpnII GATC 4 cut(s) 409, 430, 496, 762
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 797
Eco147I AGGCCT 1 cut(s) 478
Eco32I GATATC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 774
Eco72I CACGTG 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 797
ErhI CCWWGG 1 cut(s) 797
FaeI CATG 2 cut(s) 52, 661
FatI CATG 2 cut(s) 48, 657
FauI CCCGC 1 cut(s) 386
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 4 cut(s) 33, 46, 261, 826
FokI GGATG 3 cut(s) 298, 363, 733
Fsp4HI GCNGC 4 cut(s) 33, 46, 261, 826
FspBI CTAG 4 cut(s) 20, 219, 347, 756
GlaI GCGC 1 cut(s) 449
GluI GCNGC 4 cut(s) 33, 46, 261, 826
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 3 cut(s) 92, 478, 796
HhaI GCGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 52, 661
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HindIII AAGCTT 2 cut(s) 119, 671
HinfI GANTC 3 cut(s) 147, 171, 230
HpaI GTTAAC 1 cut(s) 627
Hpy166II GTNNAC 3 cut(s) 102, 467, 627
Hpy188I TCNGA 4 cut(s) 61, 85, 414, 580
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 3 cut(s) 102, 467, 627
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 103, 468
HpyCH4III ACNGT 2 cut(s) 323, 418
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 3 cut(s) 78, 260, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 2 cut(s) 52, 661
HspAI GCGC 1 cut(s) 448
Ksp22I TGATCA 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 627
Kzo9I GATC 4 cut(s) 409, 430, 496, 762
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 3 cut(s) 44, 272, 812
LweI GCATC 2 cut(s) 538, 571
MaeI CTAG 4 cut(s) 20, 219, 347, 756
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 211
MalI GATC 4 cut(s) 411, 432, 498, 764
MboI GATC 4 cut(s) 409, 430, 496, 762
MboII GAAGA 1 cut(s) 49
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 762
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 6 cut(s) 15, 86, 140, 157, 516, 788
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 162, 508
MnlI CCTC 2 cut(s) 691, 774
MroXI GAANNNNTTC 1 cut(s) 175
MseI TTAA 3 cut(s) 117, 269, 626
MslI CAYNNNNRTG 2 cut(s) 539, 558
MspCI CTTAAG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 452
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 4 cut(s) 409, 430, 496, 762
NlaIII CATG 2 cut(s) 52, 661
NlaIV GGNNCC 2 cut(s) 63, 776
NmuCI GTSAC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 478
PctI GAATGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 147, 171
PkrI GCNGC 4 cut(s) 34, 47, 262, 827
PleI GAGTC 1 cut(s) 238
PmaCI CACGTG 1 cut(s) 556
PmlI CACGTG 1 cut(s) 556
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 556
PsiI TTATAA 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 450
PspCI CACGTG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 63, 776
PspPI GGNCC 1 cut(s) 774
PsrI GAACNNNNNNTAC 4 cut(s) 160, 192, 551, 583
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 762
RsaI GTAC 2 cut(s) 468, 662
RsaNI GTAC 2 cut(s) 467, 661
RseI CAYNNNNRTG 2 cut(s) 539, 558
SaqAI TTAA 3 cut(s) 117, 269, 626
SatI GCNGC 4 cut(s) 33, 46, 261, 826
Sau3AI GATC 4 cut(s) 409, 430, 496, 762
Sau96I GGNCC 1 cut(s) 774
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 377
SetI ASST 7 cut(s) 123, 371, 490, 558, 675, 739, 754
SfaNI GCATC 2 cut(s) 538, 571
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 539, 558
SmlI CTYRAG 3 cut(s) 116, 191, 679
SmoI CTYRAG 3 cut(s) 116, 191, 679
Sse9I AATT 6 cut(s) 15, 86, 140, 157, 516, 788
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 2 cut(s) 45, 379
SspI AATATT 1 cut(s) 819
SspMI CTAG 4 cut(s) 20, 219, 347, 756
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 797
TaaI ACNGT 2 cut(s) 323, 418
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 150, 200, 336
TasI AATT 6 cut(s) 15, 86, 140, 157, 516, 788
TatI WGTACW 2 cut(s) 466, 660
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 147, 171
Tru1I TTAA 3 cut(s) 117, 269, 626
Tru9I TTAA 3 cut(s) 117, 269, 626
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 3 cut(s) 32, 260, 825
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 576, 638
TspRI CASTG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 774
XapI RAATTY 1 cut(s) 788
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 4 cut(s) 20, 219, 347, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.