Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005287

Physical Location & Seq

Genomic Coordinates Reverse (-)

6479111 .. 6482702

Gene Structure 3592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0080100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCGAGGCTTCTCCAAAACGCTCTCTCTATCAAACGCTTTCTATTACCGCCGCAGGGATATAGAAGTGGATTACTGGGCACTTGTTCTCAGCTTTGCAATTTTTCTTCTAAAGGTAGAAAGAAGTCCAAGTCTGATGGAAGTGACTCGGGCGGAGAGAATATGTCCAAGAAGGATTTAGCTCTCCAGCAAGCACTTGATCAGATTACAGATTCTTTTGGAAAGGGCTCTATAATGTGGCTTGGTCGGTCTGGCGCTCCCAGAAATGTTGAGGTTGTATCCACGGGATCTTTTTCTCTGGATCTGGCACTGGGAACCGGTGGCTTTCCTAAGGGACGTGTTGTGGAGATTTATGGTCCTGAGGCTTCTGGGAAAACTACTCTCGCTCTACATGTAATAGCTGAAGCACAGAAACAAGGAGGTTACTGTGTTTTTGTTGATGCTGAGCATGCTCTTGATCCTACAATGGCTCAGGCAATTGGGGTAAAGACCGAGAATCTACTTCTATCGCAACCTGATTGTGGAGAGCAAGCCCTCAGTCTTGTGGACACTCTAATCAGGAGTGGTTCAGTTGATGTTGTTGTTGTTGACAGTGTAAGTAAGGTGGCTGCCCTAGTGCCTAAAGGCGAACTTGATGGGGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGGTTAATGAGTCAGGCGCTTCGGAAATTAAGTCACTCTTTATCTCTATCCCAGACAATATTAATCTTTACAAATCAGGTCAGGGCTAAGCTTTCGACTTTTGGAGGATTTGGTGGGCCTCAAGAAGTTACTTGTGGTGGCAATGCTTTGAAGTTCTATGCCTCAGTCCGCCTTAATGTTAGGAGAATAGGGCTTATCAAGAAGGGTGAAGAGACGGTAGGGAGTCAAGTTCAAGTGAAGATAGTGAAGAACAAGCTTGCTCCACCATTTAGAACTGTTCTGTTGGAGCTCGAGTTTGGGAAGGGTTTATGTCGTGAATCGGAGCTCATCGACTTGGGATTAAAAAACAAATTCATCATAAAAAGTGGTTCACATTATAATTTAAATGGTCAAAACTTTCATGGCAAAGATGCTTTGAAAAGGTTTTTGTCTGAGGATGATGCTGCTAGGGAAGAACTTGCATTGAAGTTGAGGGAGAAGCTAGTTGATGCTGTGGAACACAAGGAAGCAGACACAGAAGCTTTAAATGAAAGTCCAACTGAGGAAATTGTTTCACCAGATTCTACTGATGAAGATGCAGTTACAGCAGTTGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

423

Amino Acids

45.33

Weight (kDa)

6.68

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	61 - 327	7.6e-115	RecA N-terminal domain
Rad51	PF08423	91 - 286	3.7e-09	Rad51
ATPase	PF06745	94 - 150	7.8e-07	KaiC
RecA_C	PF21096	332 - 385	3.6e-08	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66240 AT5G66240 AT5G66240
fragaria_vesca	FvH4_1g11900 FvH4_1g11900 FvH4_1g11900
malus_domestica	MD02G1132900.v1.1 MD15G1245700.v1.1
prunus_persica	Prupe.7G167800_v2.0.a1
pyrus_communis	pycom02g10440 pycom15g21640
rosa_chinensis	RchiOBHm_Chr1g0360691 RchiOBHm_Chr2g0099491 RchiOBHm_Chr6g0289991
rosa_laevigata	RLG00000016887 RLG00000034249
rosa_multiflora	Rmu_sc0002542.1_g000016
rosa_roxburghii	Rroxscaffold_2G00143030 Rroxscaffold_3G00225660 Rroxscaffold_3G00263950 Rroxscaffold_7G00208720
rosa_rugosa	Rorug02G0080100 Rorug02G0080100 Rorug02G0080100
rosa_samantha	Rh2BG133200 Rh2CG133800 Rh2DG134100
rosa_wichuraiana	Rw2G010020 Rw4G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1050
AciI	CCGC	4 cut(s)	50, 53, 153, 841
AclWI	GGATC	3 cut(s)	295, 309, 452
AcsI	RAATTY	1 cut(s)	1022
AcuI	CTGAAG	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	56, 521
AflIII	ACRYGT	2 cut(s)	337, 391
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	823, 905, 1090, 1138
AjiI	CACGTC	1 cut(s)	338
AluBI	AGCT	9 cut(s)	94, 182, 401, 763, 928, 961, 997, 1153, 1193
AluI	AGCT	9 cut(s)	94, 182, 401, 763, 928, 961, 997, 1153, 1193
Alw21I	GWGCWC	2 cut(s)	963, 999
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	3 cut(s)	295, 309, 452
Ama87I	CYCGRG	2 cut(s)	148, 962
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	2 cut(s)	608, 1115
ApoI	RAATTY	1 cut(s)	1022
AseI	ATTAAT	1 cut(s)	734
AsiGI	ACCGGT	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	257, 691
AspS9I	GGNCC	2 cut(s)	356, 788
AsuHPI	GGTGA	3 cut(s)	659, 890, 1218
AvaI	CYCGRG	2 cut(s)	148, 962
AvaII	GGWCC	1 cut(s)	356
AxyI	CCTNAGG	2 cut(s)	330, 360
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	3 cut(s)	230, 963, 999
Bbv12I	GWGCWC	2 cut(s)	963, 999
BbvI	GCAGC	2 cut(s)	595, 1102
BccI	CCATC	3 cut(s)	131, 629, 637
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	4 cut(s)	614, 672, 1119, 1154
BfoI	RGCGCY	2 cut(s)	258, 692
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	53, 609, 1116
BlpI	GCTNAGC	2 cut(s)	444, 759
BlsI	GCNGC	3 cut(s)	54, 610, 1117
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	2 cut(s)	148, 962
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	356, 788
BmiI	GGNNCC	1 cut(s)	316
BmrI	ACTGGG	2 cut(s)	86, 320
BmsI	GCATC	6 cut(s)	430, 640, 1072, 1102, 1150, 1237
BmuI	ACTGGG	2 cut(s)	86, 320
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu1102I	GCTNAGC	2 cut(s)	444, 759
BpuEI	CTTGAG	1 cut(s)	777
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 521
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	81, 315
Bse21I	CCTNAGG	2 cut(s)	330, 360
Bse3DI	GCAATG	2 cut(s)	669, 820
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	1114
BseLI	CCNNNNNNNGG	2 cut(s)	56, 521
BseMI	GCAATG	2 cut(s)	669, 820
BseMII	CTCAG	8 cut(s)	104, 351, 435, 485, 550, 849, 1095, 1203
BseNI	ACTGG	2 cut(s)	81, 315
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	595, 1102
BshFI	GGCC	1 cut(s)	790
BshTI	ACCGGT	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	963, 999
BsiHKCI	CYCGRG	2 cut(s)	148, 962
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	56, 521
BsmAI	GTCTC	1 cut(s)	878
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	790
BsoBI	CYCGRG	2 cut(s)	148, 962
Bsp1286I	GDGCHC	4 cut(s)	83, 230, 963, 999
Bsp143I	GATC	4 cut(s)	199, 287, 301, 457
Bsp1720I	GCTNAGC	2 cut(s)	444, 759
BspACI	CCGC	4 cut(s)	50, 53, 153, 841
BspANI	GGCC	1 cut(s)	790
BspCNI	CTCAG	8 cut(s)	103, 352, 436, 484, 549, 848, 1096, 1204
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	3 cut(s)	295, 309, 452
BsrDI	GCAATG	2 cut(s)	669, 820
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	81, 315
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	199, 287, 301, 457
Bst4CI	ACNGT	4 cut(s)	428, 593, 889, 949
Bst6I	CTCTTC	1 cut(s)	876
BstC8I	GCNNGC	5 cut(s)	192, 450, 531, 669, 930
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	1114
BstH2I	RGCGCY	2 cut(s)	258, 692
BstHHI	GCGC	2 cut(s)	257, 691
BstKTI	GATC	4 cut(s)	202, 290, 304, 460
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	4 cut(s)	199, 287, 301, 457
BstMWI	GCNNNNNNNGC	5 cut(s)	449, 659, 668, 1256, 1265
BstNSI	RCATGY	2 cut(s)	395, 452
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	595, 1102
BstX2I	RGATCY	2 cut(s)	287, 301
BstYI	RGATCY	2 cut(s)	287, 301
Bsu36I	CCTNAGG	2 cut(s)	330, 360
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	790
BtgI	CCRYGG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	1114
BtsIMutI	CAGTG	2 cut(s)	308, 598
Cac8I	GCNNGC	5 cut(s)	192, 450, 531, 669, 930
CfoI	GCGC	2 cut(s)	257, 691
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	356, 788
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	3 cut(s)	392, 449, 1073
DpnI	GATC	4 cut(s)	201, 289, 303, 459
DpnII	GATC	4 cut(s)	199, 287, 301, 457
DraI	TTTAAA	2 cut(s)	1056, 1197
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
EciI	GGCGGA	2 cut(s)	168, 830
Ecl136II	GAGCTC	2 cut(s)	961, 997
Eco24I	GRGCYC	3 cut(s)	230, 963, 999
Eco47I	GGWCC	1 cut(s)	356
Eco53kI	GAGCTC	2 cut(s)	961, 997
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	2 cut(s)	330, 360
Eco88I	CYCGRG	2 cut(s)	148, 962
EcoICRI	GAGCTC	2 cut(s)	961, 997
EcoT38I	GRGCYC	3 cut(s)	230, 963, 999
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	3 cut(s)	395, 452, 1076
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 694, 726
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	391, 448, 1072
FauNDI	CATATG	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	53, 609, 1116
FokI	GGATG	1 cut(s)	1121
FriOI	GRGCYC	3 cut(s)	230, 963, 999
Fsp4HI	GCNGC	3 cut(s)	53, 609, 1116
FspBI	CTAG	4 cut(s)	614, 672, 1119, 1154
GlaI	GCGC	2 cut(s)	256, 690
GluI	GCNGC	3 cut(s)	53, 609, 1116
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	2 cut(s)	258, 692
HaeIII	GGCC	1 cut(s)	790
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	2 cut(s)	257, 691
Hin1II	CATG	3 cut(s)	395, 452, 1076
Hin6I	GCGC	2 cut(s)	255, 689
HinP1I	GCGC	2 cut(s)	255, 689
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	3 cut(s)	761, 926, 1191
HinfI	GANTC	7 cut(s)	146, 212, 496, 682, 895, 989, 1232
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	659, 890, 1218
Hpy166II	GTNNAC	3 cut(s)	547, 589, 1043
Hpy188I	TCNGA	5 cut(s)	136, 204, 696, 994, 1105
Hpy188III	TCNNGA	7 cut(s)	299, 359, 455, 559, 794, 871, 986
Hpy8I	GTNNAC	3 cut(s)	547, 589, 1043
HpyAV	CCTTC	3 cut(s)	166, 868, 967
HpyCH4III	ACNGT	4 cut(s)	428, 593, 889, 949
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	4 cut(s)	99, 667, 1133, 1250
HpyF10VI	GCNNNNNNNGC	5 cut(s)	449, 659, 668, 1256, 1265
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	395, 452, 1076
HspAI	GCGC	2 cut(s)	255, 689
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	199, 287, 301, 457
LmnI	GCTCC	5 cut(s)	262, 937, 958, 994, 1265
Lsp1109I	GCAGC	2 cut(s)	595, 1102
LweI	GCATC	6 cut(s)	430, 640, 1072, 1102, 1150, 1237
MaeI	CTAG	4 cut(s)	614, 672, 1119, 1154
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	5 cut(s)	143, 422, 704, 799, 1252
MalI	GATC	4 cut(s)	201, 289, 303, 459
MboI	GATC	4 cut(s)	199, 287, 301, 457
MboII	GAAGA	6 cut(s)	99, 893, 922, 931, 1136, 1256
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	2 cut(s)	287, 301
MhlI	GDGCHC	4 cut(s)	83, 230, 963, 999
MluCI	AATT	6 cut(s)	100, 477, 698, 1022, 1051, 1218
MlyI	GAGTC	3 cut(s)	140, 691, 904
MmeI	TCCRAC	3 cut(s)	936, 1232, 1243
MseI	TTAA	7 cut(s)	677, 701, 734, 846, 1013, 1055, 1196
MspI	CCGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	5 cut(s)	449, 659, 668, 1256, 1265
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	4 cut(s)	199, 287, 301, 457
NlaIII	CATG	3 cut(s)	395, 452, 1076
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	143, 704
NspI	RCATGY	2 cut(s)	395, 452
PaeI	GCATGC	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	962
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	4 cut(s)	212, 496, 989, 1232
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	54, 610, 1117
PleI	GAGTC	3 cut(s)	140, 690, 903
PpsI	GAGTC	3 cut(s)	140, 690, 903
PscI	ACATGT	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	734
PsiI	TTATAA	1 cut(s)	1050
Psp124BI	GAGCTC	2 cut(s)	963, 999
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	356, 788
PspXI	VCTCGAGB	1 cut(s)	962
PsuI	RGATCY	2 cut(s)	287, 301
SacI	GAGCTC	2 cut(s)	963, 999
SaqAI	TTAA	7 cut(s)	677, 701, 734, 846, 1013, 1055, 1196
SatI	GCNGC	3 cut(s)	53, 609, 1116
Sau3AI	GATC	4 cut(s)	199, 287, 301, 457
Sau96I	GGNCC	2 cut(s)	356, 788
SchI	GAGTC	3 cut(s)	140, 691, 904
SduI	GDGCHC	4 cut(s)	83, 230, 963, 999
SfaNI	GCATC	6 cut(s)	430, 640, 1072, 1102, 1150, 1237
Sfr274I	CTCGAG	1 cut(s)	962
SinI	GGWCC	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	962
SmiI	ATTTAAAT	1 cut(s)	1056
SmlI	CTYRAG	2 cut(s)	792, 962
SmoI	CTYRAG	2 cut(s)	792, 962
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	6 cut(s)	100, 477, 698, 1022, 1051, 1218
SsiI	CCGC	4 cut(s)	50, 53, 153, 841
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	4 cut(s)	614, 672, 1119, 1154
SstI	GAGCTC	2 cut(s)	963, 999
SwaI	ATTTAAAT	1 cut(s)	1056
TaaI	ACNGT	4 cut(s)	428, 593, 889, 949
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	767, 963, 1002
TaqII	GACCGA	2 cut(s)	237, 506
TasI	AATT	6 cut(s)	100, 477, 698, 1022, 1051, 1218
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	4 cut(s)	212, 496, 989, 1232
Tru1I	TTAA	7 cut(s)	677, 701, 734, 846, 1013, 1055, 1196
Tru9I	TTAA	7 cut(s)	677, 701, 734, 846, 1013, 1055, 1196
TscAI	CASTG	2 cut(s)	315, 598
TseFI	GTSAC	2 cut(s)	143, 704
TseI	GCWGC	2 cut(s)	608, 1115
Tsp45I	GTSAC	2 cut(s)	143, 704
TspDTI	ATGAA	4 cut(s)	1015, 1061, 1215, 1257
TspRI	CASTG	2 cut(s)	315, 598
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	734
XapI	RAATTY	1 cut(s)	1022
XceI	RCATGY	2 cut(s)	395, 452
XhoI	CTCGAG	1 cut(s)	962
XspI	CTAG	4 cut(s)	614, 672, 1119, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.