Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005287

Physical Location & Seq

Genomic Coordinates Forward (+)

15691613 .. 15692579

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTACGAAAAGGGTCCTTTTGATATCTTTTCTGTTGGGGGAGATATGTCGGATGCAAATGTTGTCAAGTTCAGTAACCATGGGAGACTTGTGCTTTCAACAACCACAGGTGGACATATTCATGTCCTTGATTCATTCCGTGGAACACTATTATCCACGTACAATGTTAAGCGAGTCTCCAGCAATTCAACATTAGAGGCTTCTTTTAGCCCCGAGGGGATGTTTGTCATGTCAGGTTCAGGTGATTGTAGTGTCTATGCTTGGAGTGTTCGGTGCGGGAAAGAAGTCACAAGCTGGAAGAGCACCGAAAATGAACCTCCAGTTATCAAATGGGCTCCCGGAAACCTCATGTTTGCAACTGGATCGATCCAAACTATCATTTTGGATTCCAGATTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

134

Amino Acids

14.47

Weight (kDa)

6.26

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66240 AT5G66240 AT5G66240
fragaria_vesca	FvH4_1g11900 FvH4_1g11900 FvH4_1g11900
malus_domestica	MD02G1132900.v1.1 MD15G1245700.v1.1
prunus_persica	Prupe.7G167800_v2.0.a1
pyrus_communis	pycom02g10440 pycom15g21640
rosa_chinensis	RchiOBHm_Chr1g0360691 RchiOBHm_Chr2g0099491 RchiOBHm_Chr6g0289991
rosa_laevigata	RLG00000016887 RLG00000034249
rosa_multiflora	Rmu_sc0002542.1_g000016
rosa_roxburghii	Rroxscaffold_2G00143030 Rroxscaffold_3G00225660 Rroxscaffold_3G00263950 Rroxscaffold_7G00208720
rosa_rugosa	Rorug02G0080100 Rorug02G0080100 Rorug02G0080100
rosa_samantha	Rh2BG133200 Rh2CG133800 Rh2DG134100
rosa_wichuraiana	Rw2G010020 Rw4G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	2 cut(s)	361, 370
AfaI	GTAC	2 cut(s)	5, 161
AgsI	TTSAA	2 cut(s)	99, 189
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	79, 181
AlwI	GGATC	2 cut(s)	361, 370
Ama87I	CYCGRG	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	79, 181
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	15, 336
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	2 cut(s)	163, 303
BpuMI	CCSGG	1 cut(s)	339
Bsa29I	ATCGAT	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	79, 139, 213
Bse1I	ACTGG	2 cut(s)	320, 364
BseCI	ATCGAT	1 cut(s)	365
BseDI	CCNNGG	3 cut(s)	79, 139, 213
BseGI	GGATG	2 cut(s)	58, 225
BseNI	ACTGG	2 cut(s)	320, 364
BshVI	ATCGAT	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	79, 181
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	305, 337
Bsp143I	GATC	2 cut(s)	362, 366
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	15, 336
BspPI	GGATC	2 cut(s)	361, 370
BspQI	GCTCTTC	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	320, 364
BssECI	CCNNGG	3 cut(s)	79, 139, 213
BssMI	GATC	2 cut(s)	362, 366
BssT1I	CCWWGG	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	159
BstDSI	CCRYGG	2 cut(s)	79, 139
BstF5I	GGATG	2 cut(s)	58, 225
BstKTI	GATC	2 cut(s)	365, 369
BstMAI	GTCTC	2 cut(s)	79, 181
BstMBI	GATC	2 cut(s)	362, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	337
Bsu15I	ATCGAT	1 cut(s)	365
BsuTUI	ATCGAT	1 cut(s)	365
BtgI	CCRYGG	2 cut(s)	79, 139
BtsCI	GGATG	2 cut(s)	58, 225
Cfr13I	GGNCC	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	4, 160
CviAII	CATG	4 cut(s)	80, 122, 229, 349
CviJI	RGCY	4 cut(s)	200, 210, 294, 335
CviKI_1	RGCY	4 cut(s)	200, 210, 294, 335
CviQI	GTAC	2 cut(s)	4, 160
DpnI	GATC	2 cut(s)	364, 368
DpnII	GATC	2 cut(s)	362, 366
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	83, 125, 232, 352
FaiI	YATR	7 cut(s)	47, 81, 117, 123, 230, 258, 350
FatI	CATG	4 cut(s)	79, 121, 228, 348
FauI	CCCGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	65, 232
FriOI	GRGCYC	1 cut(s)	337
GsuI	CTGGAG	2 cut(s)	163, 303
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	4 cut(s)	83, 125, 232, 352
HinfI	GANTC	3 cut(s)	131, 174, 386
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	56, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	83, 125, 232, 352
Kzo9I	GATC	2 cut(s)	362, 366
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	8 cut(s)	93, 193, 219, 225, 280, 333, 345, 352
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	74, 286
MalI	GATC	2 cut(s)	364, 368
MboI	GATC	2 cut(s)	362, 366
MboII	GAAGA	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	305, 337
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	4 cut(s)	190, 208, 327, 356
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	362, 366
NlaIII	CATG	4 cut(s)	83, 125, 232, 352
NlaIV	GGNNCC	2 cut(s)	15, 336
NmuCI	GTSAC	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	131, 386
PfoI	TCCNGGA	1 cut(s)	337
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	15, 336
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
RsaI	GTAC	2 cut(s)	5, 161
RsaNI	GTAC	2 cut(s)	4, 160
RseI	CAYNNNNRTG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	362, 366
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	305, 337
SetI	ASST	7 cut(s)	112, 161, 238, 244, 296, 319, 348
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	365
TasI	AATT	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	131, 386
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	110, 123, 327
TspGWI	ACGGA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.