RchiOBHm_Chr2g0099491

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005287
Physical Location & Seq
Forward (+)
11706027 .. 11708657
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47421

Sequence Viewer

Length: 1023 bp
ATGTCAATGTCAAGCATTCCCCAAATGGCAGGTGGACCGGAAAGAGAAGATAAGGTCTCTTTGGAGCTGACGGAGGAGATTCTCCAGAGCATGGAAGTTGGGCTGGCTTTCAGAGACTACAATGGTAGAATCAGTTCGTTGGATTTTCACAAGGCTTCGAGTTATGTAGTGACTGCTAGTGATGATGAGTCGATTCGTTTGTATGATGTGTCCACTGCAACGTGCTTGAAGACCATTAACAGCAAAAAATATGGGGTTGATTTGGTCCGCTTTACTTCCCATCCCACCACGGTTATATACTCGTCGAAAAATGGCTGGGATGAATCGCTGAGGCTTCTCTCATTGAATGACAACAAGTACTTGCGCTATTTCAAAGGACATCATGACAGGGTTGTCTCACTTAGCTTGTGCTCCCGCAAAGAGTGCTTCATTTCTGGTTCTCTTGATCGGACAGTTCTGCTTTGGGATCAACGAGCCGAGAAGTGCCAGGGTCTTTTACGTGTACAAGGAAGGCCTGCCACTGCTTATGATGACCAAGGGCTTGTTTTTACAATTGCCTTTGGTGGATACATACGAATGTTTGATGCCCGCATGTATGAAAAGGGTCCCTTTGATATCTTTTCTGTTGGGGGAGATATGTCTGATGCAAATGTTGTAAAGTTCAGTAATGATGGGAGACTTATGCTGTTAACAACGACAGATGGACATATTCATGTACTTGATTCATTCCGTGGCACGCTTTTATCCACGTACAATGTAAAGCCCGTTTCAAGCAATGCTACATTAGAGGCTTCTTTTAGCCCAGATGGGATGTTTGTTATGTCAGGTTCAGGTGATGGTAGTGTCTATGCTTGGAGTGTTCGGAGCGGGAAAGAGGTCACAAGTTGGCTTAGTACTGAAAGTGAACCTCCTGTTATTAAATGGGCTCCTGGAAGCCTCATGTTTGCAACTGGGTCTTCTGAACTATCATTTTGGATTCCGGATTTGTCTAAACTGGCAGCTTATGTTGGTGGAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
WD40

Protein Analysis

340

Amino Acids

37.63

Weight (kDa)

5.91

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 27 - 159 1e-05 TEP-1 second beta-propeller
WD40_Prp19 PF24814 35 - 234 3.9e-17 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 37 - 103 2.2e-07 WDR3 first beta-propeller domain
EIF3I PF24805 37 - 105 2.8e-06 EIF3I
WD40_CDC20-Fz PF24807 38 - 161 1.1e-11 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 40 - 102 1.2e-07 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 41 - 320 8.9e-39 WDR5 beta-propeller domain
WDR55 PF24796 43 - 162 3.8e-08 WDR55
Beta-prop_WDR3_2nd PF25172 44 - 160 1e-10 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 46 - 155 1e-05 MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st PF24817 88 - 249 2.1e-10 WDHD1 first WD40 domain
NBCH_WD40 PF20426 105 - 160 2.8e-06 Neurobeachin beta propeller domain
Beta-prop_THOC3 PF25174 106 - 321 8.3e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 107 - 170 1.1e-06 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 114 - 245 2.1e-07 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 134 - 296 3.3e-12 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 189 - 297 6.6e-06 WDR55
WD40_CDC20-Fz PF24807 213 - 332 5.3e-07 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 219 - 325 7e-07 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
AasI GACNNNNNNGTC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 867
AccIII TCCGGA 1 cut(s) 979
AciI CCGC 4 cut(s) 268, 415, 589, 867
AclWI GGATC 1 cut(s) 474
AfaI GTAC 5 cut(s) 359, 504, 717, 752, 895
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 4 cut(s) 229, 346, 373, 771
AjnI CCWGG 2 cut(s) 486, 928
AluBI AGCT 3 cut(s) 67, 405, 1001
AluI AGCT 3 cut(s) 67, 405, 1001
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 4 cut(s) 61, 108, 400, 670
AlwI GGATC 1 cut(s) 474
Aor13HI TCCGGA 1 cut(s) 979
AoxI GGCC 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 998
Asp700I GAANNNNTTC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 3 cut(s) 35, 265, 605
AsuHPI GGTGA 1 cut(s) 845
AvaII GGWCC 3 cut(s) 35, 265, 605
BanII GRGCYC 1 cut(s) 928
BbsI GAAGAC 2 cut(s) 236, 948
Bbv12I GWGCWC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 1010
BccI CCATC 5 cut(s) 288, 665, 695, 800, 830
BciT130I CCWGG 2 cut(s) 488, 930
BciVI GTATCC 1 cut(s) 560
BcoDI GTCTC 4 cut(s) 61, 108, 400, 670
BfaI CTAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 1 cut(s) 999
BlsI GCNGC 1 cut(s) 1000
BmcAI AGTACT 2 cut(s) 359, 895
Bme1390I CCNGG 2 cut(s) 488, 930
Bme18I GGWCC 3 cut(s) 35, 265, 605
BmgT120I GGNCC 3 cut(s) 35, 265, 605
BmiI GGNNCC 3 cut(s) 606, 607, 927
BmrFI CCNGG 2 cut(s) 488, 930
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 2 cut(s) 574, 634
BmuI ACTGGG 1 cut(s) 960
BpiI GAAGAC 2 cut(s) 236, 948
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 329
BsaAI YACGTR 2 cut(s) 500, 750
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 4 cut(s) 288, 487, 535, 730
BsaWI WCCGGW 2 cut(s) 37, 979
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 955, 999
Bse3DI GCAATG 1 cut(s) 781
BseAI TCCGGA 1 cut(s) 979
BseBI CCWGG 2 cut(s) 488, 930
BseDI CCNNGG 4 cut(s) 288, 487, 535, 730
BseGI GGATG 3 cut(s) 280, 325, 816
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 955, 999
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 1010
BseYI CCCAGC 1 cut(s) 315
BshFI GGCC 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 2 cut(s) 38, 980
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 4 cut(s) 61, 108, 400, 670
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 1 cut(s) 514
Bso31I GGTCTC 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 413, 928
Bsp13I TCCGGA 1 cut(s) 979
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 2 cut(s) 445, 466
BspACI CCGC 4 cut(s) 268, 415, 589, 867
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 979
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 606, 607, 927
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 474
BspTNI GGTCTC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 867
BsrDI GCAATG 1 cut(s) 781
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 2 cut(s) 955, 999
BssECI CCNNGG 4 cut(s) 288, 487, 535, 730
BssMI GATC 2 cut(s) 445, 466
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 2 cut(s) 488, 930
Bst4CI ACNGT 2 cut(s) 292, 454
BstAPI GCANNNNNTGC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 502
BstBAI YACGTR 2 cut(s) 500, 750
BstC8I GCNNGC 4 cut(s) 105, 516, 589, 737
BstDEI CTNAG 3 cut(s) 329, 401, 890
BstDSI CCRYGG 2 cut(s) 288, 730
BstF5I GGATG 3 cut(s) 280, 325, 816
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 2 cut(s) 448, 469
BstMAI GTCTC 4 cut(s) 61, 108, 400, 670
BstMBI GATC 2 cut(s) 445, 466
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNI CCWGG 2 cut(s) 488, 930
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 486, 928
BstV1I GCAGC 1 cut(s) 1010
BstV2I GAAGAC 2 cut(s) 236, 948
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 514
BtgI CCRYGG 2 cut(s) 288, 730
BtsCI GGATG 3 cut(s) 280, 325, 816
BtsI GCAGTG 2 cut(s) 213, 519
BtsIMutI CAGTG 2 cut(s) 213, 519
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 4 cut(s) 105, 516, 589, 737
CciI TCATGA 1 cut(s) 382
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 3 cut(s) 35, 265, 605
Csp6I GTAC 5 cut(s) 358, 503, 716, 751, 894
CviAII CATG 5 cut(s) 91, 383, 592, 713, 940
CviQI GTAC 5 cut(s) 358, 503, 716, 751, 894
DdeI CTNAG 3 cut(s) 329, 401, 890
DpnI GATC 2 cut(s) 447, 468
DpnII GATC 2 cut(s) 445, 466
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 535
Eco147I AGGCCT 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 928
Eco31I GGTCTC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 3 cut(s) 35, 265, 605
EcoO109I RGGNCCY 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 486, 928
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 1 cut(s) 535
FaeI CATG 5 cut(s) 94, 386, 595, 716, 943
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 1 cut(s) 591
FatI CATG 5 cut(s) 90, 382, 591, 712, 939
FauI CCCGC 3 cut(s) 422, 596, 860
Fnu4HI GCNGC 1 cut(s) 999
FokI GGATG 3 cut(s) 267, 332, 823
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 1 cut(s) 999
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 999
GsaI CCCAGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 514
HapII CCGG 2 cut(s) 38, 980
HhaI GCGC 1 cut(s) 366
Hin1II CATG 5 cut(s) 94, 386, 595, 716, 943
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HincII GTYRAC 1 cut(s) 690
HindII GTYRAC 1 cut(s) 690
HinfI GANTC 7 cut(s) 79, 129, 188, 193, 323, 722, 976
HpaI GTTAAC 1 cut(s) 690
HpaII CCGG 2 cut(s) 38, 980
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 5 cut(s) 35, 213, 503, 690, 905
Hpy188I TCNGA 5 cut(s) 113, 450, 643, 864, 961
Hpy188III TCNNGA 4 cut(s) 85, 383, 443, 980
Hpy8I GTNNAC 5 cut(s) 35, 213, 503, 690, 905
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 504, 1008
HpyCH4III ACNGT 2 cut(s) 292, 454
HpyCH4IV ACGT 3 cut(s) 221, 499, 749
HpyCH4V TGCA 3 cut(s) 218, 647, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 3 cut(s) 329, 401, 890
HpySE526I ACGT 3 cut(s) 221, 499, 749
Hsp92II CATG 5 cut(s) 94, 386, 595, 716, 943
HspAI GCGC 1 cut(s) 364
KflI GGGWCCC 1 cut(s) 605
Kpn2I TCCGGA 1 cut(s) 979
KspAI GTTAAC 1 cut(s) 690
Kzo9I GATC 2 cut(s) 445, 466
LmnI GCTCC 4 cut(s) 64, 416, 864, 931
Lsp1109I GCAGC 1 cut(s) 1010
LweI GCATC 2 cut(s) 574, 634
MaeI CTAG 1 cut(s) 177
MaeII ACGT 3 cut(s) 221, 499, 749
MaeIII GTNAC 2 cut(s) 169, 877
MalI GATC 2 cut(s) 447, 468
MbiI CCGCTC 1 cut(s) 867
MboI GATC 2 cut(s) 445, 466
MboII GAAGA 3 cut(s) 59, 241, 948
MfeI CAATTG 1 cut(s) 552
MhlI GDGCHC 2 cut(s) 413, 928
MluCI AATT 1 cut(s) 552
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 6 cut(s) 67, 324, 781, 868, 918, 947
MroI TCCGGA 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 3 cut(s) 237, 689, 918
MslI CAYNNNNRTG 2 cut(s) 575, 711
MspI CCGG 2 cut(s) 38, 980
MspR9I CCNGG 2 cut(s) 488, 930
MunI CAATTG 1 cut(s) 552
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 2 cut(s) 488, 930
MwoI GCNNNNNNNGC 1 cut(s) 423
NdeII GATC 2 cut(s) 445, 466
NlaIII CATG 5 cut(s) 94, 386, 595, 716, 943
NlaIV GGNNCC 3 cut(s) 606, 607, 927
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 2 cut(s) 169, 877
NspI RCATGY 1 cut(s) 595
PagI TCATGA 1 cut(s) 382
PaqCI CACCTGC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 514
PctI GAATGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 6 cut(s) 79, 129, 193, 323, 722, 976
PflMI CCANNNNNTGG 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 1 cut(s) 1000
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 2 cut(s) 500, 750
PpuMI RGGWCCY 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 605
Psp6I CCWGG 2 cut(s) 486, 928
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 2 cut(s) 486, 928
PspN4I GGNNCC 3 cut(s) 606, 607, 927
PspPI GGNCC 3 cut(s) 35, 265, 605
PspPPI RGGWCCY 1 cut(s) 605
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
RsaI GTAC 5 cut(s) 359, 504, 717, 752, 895
RsaNI GTAC 5 cut(s) 358, 503, 716, 751, 894
RseI CAYNNNNRTG 2 cut(s) 575, 711
SaqAI TTAA 3 cut(s) 237, 689, 918
SatI GCNGC 1 cut(s) 999
Sau3AI GATC 2 cut(s) 445, 466
Sau96I GGNCC 3 cut(s) 35, 265, 605
ScaI AGTACT 2 cut(s) 359, 895
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 488, 930
SduI GDGCHC 2 cut(s) 413, 928
SfaNI GCATC 2 cut(s) 574, 634
SinI GGWCC 3 cut(s) 35, 265, 605
SmiMI CAYNNNNRTG 2 cut(s) 575, 711
Sse9I AATT 1 cut(s) 552
SseBI AGGCCT 1 cut(s) 514
SsiI CCGC 4 cut(s) 268, 415, 589, 867
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 514
StyD4I CCNGG 2 cut(s) 486, 928
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 2 cut(s) 292, 454
TaiI ACGT 3 cut(s) 224, 502, 752
TaqI TCGA 3 cut(s) 158, 191, 305
TasI AATT 1 cut(s) 552
TatI WGTACW 4 cut(s) 357, 502, 715, 893
TfiI GAWTC 6 cut(s) 79, 129, 193, 323, 722, 976
Tru1I TTAA 3 cut(s) 237, 689, 918
Tru9I TTAA 3 cut(s) 237, 689, 918
TscAI CASTG 2 cut(s) 220, 526
TseFI GTSAC 2 cut(s) 169, 877
TseI GCWGC 1 cut(s) 998
Tsp45I GTSAC 2 cut(s) 169, 877
TspDTI ATGAA 5 cut(s) 336, 418, 612, 701, 714
TspGWI ACGGA 2 cut(s) 86, 719
TspRI CASTG 2 cut(s) 220, 526
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 3 cut(s) 35, 265, 605
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 1 cut(s) 177
ZrmI AGTACT 2 cut(s) 359, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.