Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005287

Physical Location & Seq

Genomic Coordinates Forward (+)

7251358 .. 7253535

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10440.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGGGGGATCCGAAAGAGAAGATAAGGTGTCTCTGGAGCTGACGGAGGAAATTATTCAAAGCATGGAAGTTGGGTTAGCTTTCAGAGACTATAGTGGTAGAATTAGTTCGTTGGACTTTCACAAGGCGTATAGTTATGTAGTGACTGCTAGTGATGACGAGTCGATTCGCCTGTATGATGTCTCCACTGCAACATGCTTGAAGACCATCAATAGCAAAAAGTATGGAGTTGATTTGGTTTGCTTTACTTCACATCCGACAACCGTTATATACTCTTCCAAAAATGGCTGGGATGAATCCTTGAGGCTTCTCTCGTTGAACGACAACAAGTACTTGCGCTACTTCAAAGGTCACCATGACAGGGTAGTCTCGCTTAGCTTGTGTTCTCGTAAAGACTGCTTCATCTCAGGCTCTCTTGATAGAACTGTTCTGCTTTGGGATCAACGTGCCGAGAAGTGCCAGGGTCTTTTACGCGTTCAAGGAAGGCCTGCCACAGCTTATGATGATCAAGGGCTAGTTTTTGCAATTGCCTTTGGTGGTTACATAAGAATGTTTGATGCCAGAATGTACGAAAAGGGTCCTTTTGAAATCTTTTCTGTTGGGGGAGATATGTCAGATGCAAATGTTATCAAGTTCAGTAACGATGGGAGACTTATGCTTTTGACAACCACAGGTGGACATATTCATGTTCTTGATTCATTCCGTGGAACTCTTTTAACCACATACAATGTAAAGCCAGTCTCCAGCAGTTCAACGTTAGAGGCTTCTTTTAGCCCCGAGGGGATGTTTGTCATATCAGGTTCAGGTGATGGTAGTGTCTATGCTTGGAGTGTTCGGAGCGGGAAAGAAGTCACAAGCTGGAAGAGCACCGAAAATGAACCTCCAGTTATTAAATGGGCTCCTGGAAACCTAATGTTTGCAACTGGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

313

Amino Acids

34.54

Weight (kDa)

5.91

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66240 AT5G66240 AT5G66240
fragaria_vesca	FvH4_1g11900 FvH4_1g11900 FvH4_1g11900
malus_domestica	MD02G1132900.v1.1 MD15G1245700.v1.1
prunus_persica	Prupe.7G167800_v2.0.a1
pyrus_communis	pycom02g10440 pycom15g21640
rosa_chinensis	RchiOBHm_Chr1g0360691 RchiOBHm_Chr2g0099491 RchiOBHm_Chr6g0289991
rosa_laevigata	RLG00000016887 RLG00000034249
rosa_multiflora	Rmu_sc0002542.1_g000016
rosa_roxburghii	Rroxscaffold_2G00143030 Rroxscaffold_3G00225660 Rroxscaffold_3G00263950 Rroxscaffold_7G00208720
rosa_rugosa	Rorug02G0080100 Rorug02G0080100 Rorug02G0080100
rosa_samantha	Rh2BG133200 Rh2CG133800 Rh2DG134100
rosa_wichuraiana	Rw2G010020 Rw4G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	843
AccII	CGCG	1 cut(s)	477
AciI	CCGC	1 cut(s)	843
AclI	AACGTT	1 cut(s)	758
AclWI	GGATC	4 cut(s)	6, 19, 450, 937
AfaI	GTAC	2 cut(s)	335, 572
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	7 cut(s)	62, 205, 322, 349, 482, 590, 756
AjnI	CCWGG	2 cut(s)	462, 904
AluBI	AGCT	5 cut(s)	43, 83, 381, 500, 861
AluI	AGCT	5 cut(s)	43, 83, 381, 500, 861
Alw21I	GWGCWC	1 cut(s)	872
Alw26I	GTCTC	6 cut(s)	39, 84, 190, 376, 646, 748
AlwI	GGATC	4 cut(s)	6, 19, 450, 937
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	1 cut(s)	488
Asp700I	GAANNNNTTC	2 cut(s)	57, 109
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	347, 821
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	904
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	872
BccI	CCATC	3 cut(s)	218, 641, 806
BcgI	CGANNNNNNTGC	1 cut(s)	912
BciT130I	CCWGG	2 cut(s)	464, 906
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	6 cut(s)	39, 84, 190, 376, 646, 748
BfaI	CTAG	2 cut(s)	153, 518
BfmI	CTRYAG	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	377
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	464, 906
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	3 cut(s)	13, 582, 903
BmrFI	CCNGG	2 cut(s)	464, 906
BmsI	GCATC	2 cut(s)	550, 610
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	3 cut(s)	59, 730, 870
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	932
BsaJI	CCNNGG	3 cut(s)	463, 706, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	740, 887, 931
BseBI	CCWGG	2 cut(s)	464, 906
BseCI	ATCGAT	1 cut(s)	932
BseDI	CCNNGG	3 cut(s)	463, 706, 780
BseGI	GGATG	3 cut(s)	256, 301, 792
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	3 cut(s)	740, 887, 931
BseYI	CCCAGC	2 cut(s)	5, 291
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	490
BshVI	ATCGAT	1 cut(s)	932
BsiHKAI	GWGCWC	1 cut(s)	872
BsiHKCI	CYCGRG	1 cut(s)	779
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	6 cut(s)	39, 84, 190, 376, 646, 748
BsnI	GGCC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	872, 904
Bsp143I	GATC	5 cut(s)	11, 442, 508, 929, 933
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	843
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	422
BspDI	ATCGAT	1 cut(s)	932
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	3 cut(s)	13, 582, 903
BspPI	GGATC	4 cut(s)	6, 19, 450, 937
BspQI	GCTCTTC	1 cut(s)	860
BsrBI	CCGCTC	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	740, 887, 931
BssECI	CCNNGG	3 cut(s)	463, 706, 780
BssMI	GATC	5 cut(s)	11, 442, 508, 929, 933
Bst2UI	CCWGG	2 cut(s)	464, 906
Bst4CI	ACNGT	2 cut(s)	268, 430
Bst6I	CTCTTC	2 cut(s)	283, 860
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	377, 409
BstDSI	CCRYGG	1 cut(s)	706
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	256, 301, 792
BstFNI	CGCG	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	5 cut(s)	14, 445, 511, 932, 936
BstMAI	GTCTC	6 cut(s)	39, 84, 190, 376, 646, 748
BstMBI	GATC	5 cut(s)	11, 442, 508, 929, 933
BstMWI	GCNNNNNNNGC	1 cut(s)	867
BstNI	CCWGG	2 cut(s)	464, 906
BstNSI	RCATGY	1 cut(s)	201
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	462, 904
BstSFI	CTRYAG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	932
BsuRI	GGCC	1 cut(s)	490
BsuTUI	ATCGAT	1 cut(s)	932
BtgI	CCRYGG	1 cut(s)	706
BtsCI	GGATG	3 cut(s)	256, 301, 792
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	932
Csp6I	GTAC	2 cut(s)	334, 571
CviAII	CATG	4 cut(s)	67, 198, 359, 689
CviQI	GTAC	2 cut(s)	334, 571
DdeI	CTNAG	2 cut(s)	377, 409
DpnI	GATC	5 cut(s)	13, 444, 510, 931, 935
DpnII	GATC	5 cut(s)	11, 442, 508, 929, 933
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	283, 860
EarI	CTCTTC	2 cut(s)	283, 860
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	779
Eco91I	GGTNACC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	462, 904
EcoT38I	GRGCYC	1 cut(s)	904
FaeI	CATG	4 cut(s)	70, 201, 362, 692
FatI	CATG	4 cut(s)	66, 197, 358, 688
FauI	CCCGC	1 cut(s)	836
FbaI	TGATCA	1 cut(s)	508
FokI	GGATG	3 cut(s)	243, 308, 799
FriOI	GRGCYC	1 cut(s)	904
FspBI	CTAG	2 cut(s)	153, 518
GlaI	GCGC	1 cut(s)	341
GsaI	CCCAGC	2 cut(s)	9, 295
GsuI	CTGGAG	3 cut(s)	59, 730, 870
HaeIII	GGCC	1 cut(s)	490
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	4 cut(s)	70, 201, 362, 692
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	4 cut(s)	164, 169, 299, 698
HphI	GGTGA	2 cut(s)	347, 821
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	6 cut(s)	16, 89, 261, 619, 840, 938
Hpy188III	TCNNGA	3 cut(s)	38, 419, 695
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	2 cut(s)	268, 430
HpyCH4IV	ACGT	2 cut(s)	448, 758
HpyCH4V	TGCA	4 cut(s)	194, 527, 623, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	867
HpyF3I	CTNAG	2 cut(s)	377, 409
HpySE526I	ACGT	2 cut(s)	448, 758
Hsp92II	CATG	4 cut(s)	70, 201, 362, 692
HspAI	GCGC	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	11, 442, 508, 929, 933
LguI	GCTCTTC	1 cut(s)	860
LmnI	GCTCC	3 cut(s)	40, 840, 907
LweI	GCATC	2 cut(s)	550, 610
MaeI	CTAG	2 cut(s)	153, 518
MaeII	ACGT	2 cut(s)	448, 758
MaeIII	GTNAC	5 cut(s)	145, 353, 542, 641, 853
MalI	GATC	5 cut(s)	13, 444, 510, 931, 935
MbiI	CCGCTC	1 cut(s)	843
MboI	GATC	5 cut(s)	11, 442, 508, 929, 933
MboII	GAAGA	4 cut(s)	35, 217, 270, 877
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	2 cut(s)	872, 904
MluCI	AATT	3 cut(s)	54, 105, 528
MluI	ACGCGT	1 cut(s)	475
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	96, 284
MnlI	CCTC	5 cut(s)	43, 300, 757, 775, 894
MroXI	GAANNNNTTC	2 cut(s)	57, 109
MseI	TTAA	2 cut(s)	719, 894
MslI	CAYNNNNRTG	2 cut(s)	551, 687
MspR9I	CCNGG	2 cut(s)	464, 906
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	464, 906
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	867
NdeII	GATC	5 cut(s)	11, 442, 508, 929, 933
NlaIII	CATG	4 cut(s)	70, 201, 362, 692
NlaIV	GGNNCC	3 cut(s)	13, 582, 903
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	3 cut(s)	145, 353, 853
NspI	RCATGY	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	860
PdmI	GAANNNNTTC	2 cut(s)	57, 109
PfeI	GAWTC	3 cut(s)	169, 299, 698
PfoI	TCCNGGA	1 cut(s)	904
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	581
Psp1406I	AACGTT	1 cut(s)	758
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	462, 904
PspEI	GGTNACC	1 cut(s)	353
PspFI	CCCAGC	2 cut(s)	5, 291
PspGI	CCWGG	2 cut(s)	462, 904
PspN4I	GGNNCC	3 cut(s)	13, 582, 903
PspPI	GGNCC	1 cut(s)	581
PspPPI	RGGWCCY	1 cut(s)	581
PsrI	GAACNNNNNNTAC	2 cut(s)	94, 126
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	2 cut(s)	335, 572
RsaNI	GTAC	2 cut(s)	334, 571
RseI	CAYNNNNRTG	2 cut(s)	551, 687
SapI	GCTCTTC	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	719, 894
Sau3AI	GATC	5 cut(s)	11, 442, 508, 929, 933
Sau96I	GGNCC	1 cut(s)	581
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	464, 906
SduI	GDGCHC	2 cut(s)	872, 904
SfaNI	GCATC	2 cut(s)	550, 610
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	551, 687
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	3 cut(s)	54, 105, 528
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	1 cut(s)	843
SspMI	CTAG	2 cut(s)	153, 518
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	462, 904
TaaI	ACNGT	2 cut(s)	268, 430
TaiI	ACGT	2 cut(s)	451, 761
TaqI	TCGA	2 cut(s)	167, 932
TasI	AATT	3 cut(s)	54, 105, 528
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	169, 299, 698
Tru1I	TTAA	2 cut(s)	719, 894
Tru9I	TTAA	2 cut(s)	719, 894
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	3 cut(s)	145, 353, 853
Tsp45I	GTSAC	3 cut(s)	145, 353, 853
TspDTI	ATGAA	5 cut(s)	312, 394, 677, 690, 894
TspGWI	ACGGA	2 cut(s)	62, 695
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	581
XceI	RCATGY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	894
XmnI	GAANNNNTTC	2 cut(s)	57, 109
XspI	CTAG	2 cut(s)	153, 518
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.