Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004521

Physical Location & Seq

Genomic Coordinates Reverse (-)

17322959 .. 17325211

Gene Structure 2253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G172100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGCTAGGCACCAACACGGATCAAATGCAATCTGCCTTGGAGGAAACTGAAGAGAACTCAAGTAAACTCAAAAAAAGCCGCTCCGTCTCATCTATATTATCTTCGTCTTCCTCCCGAAAAAGCCTCCTTAGATCTAGCACCAGAAGTTCTTCAACAATCACCCATTTGAATGGTGGTCTCTTTGATGACAATGGAGCAATGGGATCCAAGTGCCATTCGTTAACACTAGGGATGCTATATGTTTTGGAGCAAAAACTCTATGAGGAGGTGAAGGCTGGAGAGGAAACCAGAAGATTATTTGATCGAAAATGCTCCCAGTATTCGAGAAACCAAGGACATGGCCTAAAGACTGAAGACAAAATTCGAGTTGAATTGCATTCCAGAATTTCGGTTGCCAAAGGAAGTGCGGAATCAACATTTGAAAAAATTCGAAAACTGAGAGATGAGGAGCTGCAACCACAACTTATTGAGTTGTTACAAGGGCTGATGAAAAATTGGAAGATCATGTCAGAAACTCATGAAACCCAACACAGAATCATGTCCGAAGTGAAGTATGTAAGCGGTTCATCCTATGAAAAGTTGTGTAATGACAACTCACACCAACTTGCTGCTACTCATGAGTTTGAAGCAGAACTTCAAAATTGGCGTGCTCGCTTTGCTTCTTATGTTTCTTCACAAAAAGAATACATTGAAGCACTTGATGGTTGGCTACATAAGCTTGTTGCTCCTGAAAGTGAAGCCGACTCCGATATGTGGTCCTCGCTACGGTCGTGTAGAGTTGGCATGCTGCCATCAACTCAAATTTGTGAGAATTGGTTAGCTTCCATAAATAAGCTGCCGCATAAAGCAGTGGCTAGTGCCATGGAAAACTTTGGCAAGGACGTCCAAGCATTGATGGTTCGACAAGCCAAGGATCATCAACAAAAGAGGAAGATAGATGGGCTTGCTAAAGAACTTCATTGGCAGGCTAGTGTATTTTATTGGGAGAGAAGGATTATGGGACTTAAGCGTTATGAGGAAAAGGAATGGCATGAGCGGTTGAAAAAGATGGAGAACAAGGTGATTGAGTTTAAGACAAGGCTAAACTCAAAGAAGGAGAAACTTCATACAAGCGTGGAGGAGACACAAAATATTACTGTGAATGGATTCCAGACGGGGTTTTCGTCCGTGTTTAAATCCTTAACCGAGTTTTCAAAGAGTGTTGTGGAAATGTATGATGGCCTTATAAGATTCAACGAGAATGGAATGAAGATAGATGACCAAAGTAGCCACCTAGCAAGCATTCATGTTGAAGCCGATGACCAAAGTAGCCGAGCACCAAGCATTCGCGTTGAAGCTGATGACCAAAGTAGCCGTGCACCAAGCATTCGCGTTGAAGCCGATGACCAAAGTAGCCAAGCACCAAGAATTCGTGTTGAAGCCGATGACCAAAGTAGCCAACCACCAAGAGTTGATGTTGAAGCCGATGAGATAAAAAATATACATAAAGGAAAAGGACACAAAAAAATGCATAGAGGACATAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

510

Amino Acids

58.18

Weight (kDa)

8.35

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11140 FvH4_3g42260
malus_domestica	MD02G1014200.v1.1
prunus_persica	Prupe.7G172100_v2.0.a1 Prupe.7G174400_v2.0.a1 Prupe.7G174500_v2.0.a1
pyrus_communis	pycom02g01300
rosa_chinensis	RchiOBHm_Chr2g0098421
rosa_laevigata	RLG00000016798 RLG00000036577 RLG00000036578 RLG00000036581
rosa_multiflora	Rmu_sc0003437.1_g000007 Rmu_ssc0000196.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005980
rosa_rugosa	Rorug02G0073100 Rorug05G0440800.1 Rorug05G0441000 Rorug05G0441100
rosa_samantha	Rh2AG120400 Rh2BG123200 Rh2CG124800 Rh2DG124900 Rh5AG497900 Rh5BG518700 Rh5BG518800 Rh5CG542400 Rh5CG542500 Rh5DG530200 Rh5DG530400
rosa_wichuraiana	Rw2G009420 Rw5G046150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1226
AatII	GACGTC	1 cut(s)	885
AccB1I	GGYRCC	1 cut(s)	8
AccBSI	CCGCTC	2 cut(s)	81, 1036
AccII	CGCG	2 cut(s)	1329, 1371
AciI	CCGC	5 cut(s)	79, 407, 561, 839, 1036
AclWI	GGATC	4 cut(s)	27, 198, 211, 921
AcsI	RAATTY	5 cut(s)	360, 384, 426, 801, 1407
AcuI	CTGAAG	2 cut(s)	69, 372
AcyI	GRCGYC	1 cut(s)	882
AfiI	CCNNNNNNNGG	2 cut(s)	753, 765
AflII	CTTAAG	1 cut(s)	1004
AluBI	AGCT	5 cut(s)	451, 718, 821, 835, 1337
AluI	AGCT	5 cut(s)	451, 718, 821, 835, 1337
Alw21I	GWGCWC	3 cut(s)	652, 1318, 1360
Alw26I	GTCTC	3 cut(s)	91, 182, 1115
Alw44I	GTGCAC	1 cut(s)	1356
AlwI	GGATC	4 cut(s)	27, 198, 211, 921
AoxI	GGCC	2 cut(s)	340, 1219
ApaLI	GTGCAC	1 cut(s)	1356
ApeKI	GCWGC	4 cut(s)	451, 608, 787, 835
ApoI	RAATTY	5 cut(s)	360, 384, 426, 801, 1407
ArsI	GACNNNNNNTTYG	2 cut(s)	1144, 1176
Asp700I	GAANNNNTTC	3 cut(s)	148, 426, 1145
AspS9I	GGNCC	1 cut(s)	756
AsuHPI	GGTGA	3 cut(s)	151, 280, 1072
AsuII	TTCGAA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	756
BaeGI	GKGCMC	1 cut(s)	1360
BamHI	GGATCC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	99, 360
Bbv12I	GWGCWC	3 cut(s)	652, 1318, 1360
BbvI	GCAGC	4 cut(s)	438, 595, 774, 822
BccI	CCATC	6 cut(s)	695, 799, 889, 932, 1042, 1211
BceAI	ACGGC	1 cut(s)	1338
BcoDI	GTCTC	3 cut(s)	91, 182, 1115
BfaI	CTAG	6 cut(s)	5, 135, 227, 855, 969, 1274
BfrI	CTTAAG	1 cut(s)	1004
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	6 cut(s)	79, 452, 609, 788, 836, 839
BlsI	GCNGC	6 cut(s)	80, 453, 610, 789, 837, 840
Bme18I	GGWCC	1 cut(s)	756
BmgT120I	GGNCC	1 cut(s)	756
BmiI	GGNNCC	2 cut(s)	10, 205
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	2 cut(s)	99, 360
BpmI	CTGGAG	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	36, 331, 861, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	753, 765
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	4 cut(s)	36, 331, 861, 909
BseGI	GGATG	2 cut(s)	237, 566
BseLI	CCNNNNNNNGG	2 cut(s)	753, 765
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	3 cut(s)	278, 461, 1133
BseSI	GKGCMC	1 cut(s)	1360
BseXI	GCAGC	4 cut(s)	438, 595, 774, 822
Bsh1236I	CGCG	2 cut(s)	1329, 1371
Bsh1285I	CGRYCG	1 cut(s)	770
BshFI	GGCC	2 cut(s)	342, 1221
BshNI	GGYRCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	770
BsiHKAI	GWGCWC	3 cut(s)	652, 1318, 1360
BslFI	GGGAC	1 cut(s)	1014
BslI	CCNNNNNNNGG	2 cut(s)	753, 765
BsmAI	GTCTC	3 cut(s)	91, 182, 1115
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	1014
BsmI	GAATGC	4 cut(s)	376, 1281, 1323, 1365
BsnI	GGCC	2 cut(s)	342, 1221
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1286I	GDGCHC	3 cut(s)	652, 1318, 1360
Bsp143I	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	5 cut(s)	79, 407, 561, 839, 1036
BspANI	GGCC	2 cut(s)	342, 1221
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	2 cut(s)	1329, 1371
BspHI	TCATGA	2 cut(s)	517, 616
BspLI	GGNNCC	2 cut(s)	10, 205
BspPI	GGATC	4 cut(s)	27, 198, 211, 921
BspT104I	TTCGAA	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	8
BspTI	CTTAAG	1 cut(s)	1004
BspTNI	GGTCTC	1 cut(s)	182
BsrBI	CCGCTC	2 cut(s)	81, 1036
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	4 cut(s)	36, 331, 861, 909
BssMI	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
BssNI	GRCGYC	1 cut(s)	882
BssT1I	CCWWGG	4 cut(s)	36, 331, 861, 909
Bst4CI	ACNGT	2 cut(s)	768, 1138
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	882
BstAFI	CTTAAG	1 cut(s)	1004
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	6 cut(s)	648, 652, 785, 945, 966, 1279
BstDEI	CTNAG	2 cut(s)	128, 437
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	2 cut(s)	237, 566
BstFNI	CGCG	2 cut(s)	1329, 1371
BstKTI	GATC	6 cut(s)	22, 134, 206, 304, 504, 916
BstMAI	GTCTC	3 cut(s)	91, 182, 1115
BstMBI	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
BstMCI	CGRYCG	1 cut(s)	770
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 715
BstNSI	RCATGY	1 cut(s)	787
BstSLI	GKGCMC	1 cut(s)	1360
BstUI	CGCG	2 cut(s)	1329, 1371
BstV1I	GCAGC	4 cut(s)	438, 595, 774, 822
BstV2I	GAAGAC	2 cut(s)	99, 360
BstX2I	RGATCY	2 cut(s)	131, 203
BstXI	CCANNNNNNTGG	2 cut(s)	170, 338
BstYI	RGATCY	2 cut(s)	131, 203
BsuRI	GGCC	2 cut(s)	342, 1221
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	2 cut(s)	237, 566
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	6 cut(s)	648, 652, 785, 945, 966, 1279
CciI	TCATGA	2 cut(s)	517, 616
Cfr13I	GGNCC	1 cut(s)	756
CviAII	CATG	9 cut(s)	338, 505, 518, 538, 617, 784, 862, 1031, 1286
DdeI	CTNAG	2 cut(s)	128, 437
DpnI	GATC	6 cut(s)	21, 133, 205, 303, 503, 915
DpnII	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
DraI	TTTAAA	1 cut(s)	1174
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	4 cut(s)	36, 331, 861, 909
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	69, 372
EcoRI	GAATTC	1 cut(s)	1407
EcoT14I	CCWWGG	4 cut(s)	36, 331, 861, 909
EcoT22I	ATGCAT	1 cut(s)	1512
ErhI	CCWWGG	4 cut(s)	36, 331, 861, 909
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	9 cut(s)	341, 508, 521, 541, 620, 787, 865, 1034, 1289
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	1 cut(s)	1014
FatI	CATG	9 cut(s)	337, 504, 517, 537, 616, 783, 861, 1030, 1285
Fnu4HI	GCNGC	6 cut(s)	79, 452, 609, 788, 836, 839
FokI	GGATG	2 cut(s)	244, 553
Fsp4HI	GCNGC	6 cut(s)	79, 452, 609, 788, 836, 839
FspBI	CTAG	6 cut(s)	5, 135, 227, 855, 969, 1274
GluI	GCNGC	6 cut(s)	79, 452, 609, 788, 836, 839
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	342, 1221
Hin1I	GRCGYC	1 cut(s)	882
Hin1II	CATG	9 cut(s)	341, 508, 521, 541, 620, 787, 865, 1034, 1289
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	5 cut(s)	410, 534, 743, 1146, 1230
HpaI	GTTAAC	1 cut(s)	222
HphI	GGTGA	3 cut(s)	151, 280, 1072
Hpy166II	GTNNAC	3 cut(s)	65, 222, 1358
Hpy188I	TCNGA	3 cut(s)	511, 544, 748
Hpy188III	TCNNGA	7 cut(s)	114, 324, 381, 518, 617, 728, 1150
Hpy8I	GTNNAC	3 cut(s)	65, 222, 1358
HpyAV	CCTTC	3 cut(s)	265, 984, 1087
HpyCH4III	ACNGT	2 cut(s)	768, 1138
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	5 cut(s)	28, 376, 454, 1358, 1510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 715
HpyF3I	CTNAG	2 cut(s)	128, 437
HpySE526I	ACGT	1 cut(s)	882
Hsp92I	GRCGYC	1 cut(s)	882
Hsp92II	CATG	9 cut(s)	341, 508, 521, 541, 620, 787, 865, 1034, 1289
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
LmnI	GCTCC	6 cut(s)	86, 194, 247, 317, 448, 730
LpnPI	CCDG	8 cut(s)	154, 261, 301, 329, 394, 741, 950, 1163
Lsp1109I	GCAGC	4 cut(s)	438, 595, 774, 822
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	6 cut(s)	5, 135, 227, 855, 969, 1274
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	6 cut(s)	21, 133, 205, 303, 503, 915
MbiI	CCGCTC	2 cut(s)	81, 1036
MboI	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
MflI	RGATCY	2 cut(s)	131, 203
MhlI	GDGCHC	3 cut(s)	652, 1318, 1360
MluCI	AATT	9 cut(s)	360, 371, 384, 426, 493, 640, 801, 811, 1407
MlyI	GAGTC	1 cut(s)	737
Mph1103I	ATGCAT	1 cut(s)	1512
MroXI	GAANNNNTTC	3 cut(s)	148, 426, 1145
MseI	TTAA	5 cut(s)	221, 1005, 1071, 1173, 1181
MslI	CAYNNNNRTG	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	1004
Mva1269I	GAATGC	4 cut(s)	376, 1281, 1323, 1365
MvnI	CGCG	2 cut(s)	1329, 1371
MwoI	GCNNNNNNNGC	2 cut(s)	656, 715
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
NlaIII	CATG	9 cut(s)	341, 508, 521, 541, 620, 787, 865, 1034, 1289
NlaIV	GGNNCC	2 cut(s)	10, 205
NmeAIII	GCCGAG	1 cut(s)	1337
NsiI	ATGCAT	1 cut(s)	1512
NspI	RCATGY	1 cut(s)	787
NspV	TTCGAA	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	787
PagI	TCATGA	2 cut(s)	517, 616
PcsI	WCGNNNNNNNCGW	2 cut(s)	767, 1160
PctI	GAATGC	4 cut(s)	376, 1281, 1323, 1365
PdmI	GAANNNNTTC	3 cut(s)	148, 426, 1145
PfeI	GAWTC	4 cut(s)	410, 534, 1146, 1230
PkrI	GCNGC	6 cut(s)	80, 453, 610, 789, 837, 840
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PsiI	TTATAA	1 cut(s)	1226
PspN4I	GGNNCC	2 cut(s)	10, 205
PspPI	GGNCC	1 cut(s)	756
PsuI	RGATCY	2 cut(s)	131, 203
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	221, 1005, 1071, 1173, 1181
SatI	GCNGC	6 cut(s)	79, 452, 609, 788, 836, 839
Sau3AI	GATC	6 cut(s)	19, 131, 203, 301, 501, 913
Sau96I	GGNCC	1 cut(s)	756
SchI	GAGTC	1 cut(s)	737
SduI	GDGCHC	3 cut(s)	652, 1318, 1360
SetI	ASST	9 cut(s)	270, 453, 720, 823, 837, 885, 1062, 1275, 1339
SfaNI	GCATC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	430
SinI	GGWCC	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	58, 1004
SmoI	CTYRAG	2 cut(s)	58, 1004
SphI	GCATGC	1 cut(s)	787
Sse9I	AATT	9 cut(s)	360, 371, 384, 426, 493, 640, 801, 811, 1407
SsiI	CCGC	5 cut(s)	79, 407, 561, 839, 1036
SspI	AATATT	1 cut(s)	1132
SspMI	CTAG	6 cut(s)	5, 135, 227, 855, 969, 1274
StyI	CCWWGG	4 cut(s)	36, 331, 861, 909
TaaI	ACNGT	2 cut(s)	768, 1138
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	5 cut(s)	304, 323, 364, 430, 901
TasI	AATT	9 cut(s)	360, 371, 384, 426, 493, 640, 801, 811, 1407
TauI	GCSGC	2 cut(s)	81, 841
TfiI	GAWTC	4 cut(s)	410, 534, 1146, 1230
Tru1I	TTAA	5 cut(s)	221, 1005, 1071, 1173, 1181
Tru9I	TTAA	5 cut(s)	221, 1005, 1071, 1173, 1181
TscAI	CASTG	1 cut(s)	855
TseI	GCWGC	4 cut(s)	451, 608, 787, 835
TspDTI	ATGAA	8 cut(s)	503, 534, 555, 588, 947, 1094, 1262, 1274
TspGWI	ACGGA	3 cut(s)	32, 73, 1156
TspRI	CASTG	1 cut(s)	855
Vha464I	CTTAAG	1 cut(s)	1004
VneI	GTGCAC	1 cut(s)	1356
VpaK11BI	GGWCC	1 cut(s)	756
XapI	RAATTY	5 cut(s)	360, 384, 426, 801, 1407
XceI	RCATGY	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmnI	GAANNNNTTC	3 cut(s)	148, 426, 1145
XspI	CTAG	6 cut(s)	5, 135, 227, 855, 969, 1274
ZraI	GACGTC	1 cut(s)	883
Zsp2I	ATGCAT	1 cut(s)	1512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.