Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004521

Physical Location & Seq

Genomic Coordinates Reverse (-)

82089013 .. 82089434

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGCAATTCTGCGTCACACATGGAGTCCAATCATAAATTTCTAGCGAAACAAATATCCCTTTGTAAAAAGAGACGGAAGGATCTGACAAAGGCTTTAGAGCGAAGAAGTAGCCTAGGCCATAAAGGCGTTCATCGAAAAACAGAATCCCTCTCCCGGCCCTCTGAAACCCCGGAAGCTAGAGGCGACCTAGTTGATGTGCCAGAAAGGAGGGACGTCTCGCAATTCTTGGAAGGGGTCGAAAAACAATTTCGTAACTCCCATGAGTCTGGTAAGGATGTCTCAAAGGAGTTGGAGACAGACAGTATTGGAATCAATGCTGCATCATCACAGGTTGTGATAACTGGTCAGGCCACTGTCAAGAAGCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.8

Weight (kDa)

9.67

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11140 FvH4_3g42260
malus_domestica	MD02G1014200.v1.1
prunus_persica	Prupe.7G172100_v2.0.a1 Prupe.7G174400_v2.0.a1 Prupe.7G174500_v2.0.a1
pyrus_communis	pycom02g01300
rosa_chinensis	RchiOBHm_Chr2g0098421
rosa_laevigata	RLG00000016798 RLG00000036577 RLG00000036578 RLG00000036581
rosa_multiflora	Rmu_sc0003437.1_g000007 Rmu_ssc0000196.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005980
rosa_rugosa	Rorug02G0073100 Rorug05G0440800.1 Rorug05G0441000 Rorug05G0441100
rosa_samantha	Rh2AG120400 Rh2BG123200 Rh2CG124800 Rh2DG124900 Rh5AG497900 Rh5BG518700 Rh5BG518800 Rh5CG542400 Rh5CG542500 Rh5DG530200 Rh5DG530400
rosa_wichuraiana	Rw2G009420 Rw5G046150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	179, 370
AluI	AGCT	2 cut(s)	179, 370
Alw26I	GTCTC	4 cut(s)	67, 223, 286, 290
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	3 cut(s)	118, 158, 351
ApeKI	GCWGC	2 cut(s)	320, 367
ApoI	RAATTY	1 cut(s)	38
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	2 cut(s)	157, 173
AvrII	CCTAGG	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	307
BcnI	CCSGG	2 cut(s)	157, 173
BcoDI	GTCTC	4 cut(s)	67, 223, 286, 290
BfaI	CTAG	5 cut(s)	44, 116, 180, 191, 373
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	321, 368
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	2 cut(s)	322, 369
Bme1390I	CCNGG	2 cut(s)	157, 173
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	157, 173
BmsI	GCATC	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	157, 173
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	115, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	349
BseDI	CCNNGG	2 cut(s)	115, 171
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	3 cut(s)	120, 160, 353
BsiSI	CCGG	2 cut(s)	157, 173
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	4 cut(s)	67, 223, 286, 290
BsmBI	CGTCTC	2 cut(s)	67, 223
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	3 cut(s)	120, 160, 353
Bsp143I	GATC	1 cut(s)	82
BspANI	GGCC	3 cut(s)	120, 160, 353
BspPI	GGATC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	115, 171
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	305, 358
BstACI	GRCGYC	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	4 cut(s)	67, 223, 286, 290
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	155, 171
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	120, 160, 353
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	1 cut(s)	3
CviAII	CATG	2 cut(s)	22, 263
CviJI	RGCY	7 cut(s)	95, 114, 120, 160, 179, 353, 370
CviKI_1	RGCY	7 cut(s)	95, 114, 120, 160, 179, 353, 370
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	2 cut(s)	67, 223
FaeI	CATG	2 cut(s)	25, 266
FaiI	YATR	4 cut(s)	23, 36, 123, 264
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	21, 262
Fnu4HI	GCNGC	2 cut(s)	321, 368
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	321, 368
FspBI	CTAG	5 cut(s)	44, 116, 180, 191, 373
GluI	GCNGC	2 cut(s)	321, 368
HaeIII	GGCC	3 cut(s)	120, 160, 353
HapII	CCGG	2 cut(s)	157, 173
HgaI	GACGC	1 cut(s)	3
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	25, 266
HinfI	GANTC	4 cut(s)	26, 146, 266, 312
HpaII	CCGG	2 cut(s)	157, 173
Hpy188I	TCNGA	2 cut(s)	87, 166
Hpy188III	TCNNGA	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	73, 227
HpyCH4III	ACNGT	2 cut(s)	305, 358
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	25, 266
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	170, 186, 216, 255, 317, 330, 335
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	5 cut(s)	44, 116, 180, 191, 373
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	15, 254
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	117
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	4 cut(s)	7, 38, 224, 248
MlyI	GAGTC	2 cut(s)	35, 275
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	161, 172, 176, 204
MspI	CCGG	2 cut(s)	157, 173
MspR9I	CCNGG	2 cut(s)	157, 173
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	2 cut(s)	157, 173
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	25, 266
NmuCI	GTSAC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	146, 312
PkrI	GCNGC	2 cut(s)	322, 369
PleI	GAGTC	2 cut(s)	34, 274
PpsI	GAGTC	2 cut(s)	34, 274
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	82
SatI	GCNGC	2 cut(s)	321, 368
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	2 cut(s)	35, 275
ScrFI	CCNGG	2 cut(s)	157, 173
SetI	ASST	5 cut(s)	181, 192, 219, 336, 372
SfaNI	GCATC	1 cut(s)	332
Sse9I	AATT	4 cut(s)	7, 38, 224, 248
SspMI	CTAG	5 cut(s)	44, 116, 180, 191, 373
StyD4I	CCNGG	2 cut(s)	155, 171
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	305, 358
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	136, 240
TasI	AATT	4 cut(s)	7, 38, 224, 248
TfiI	GAWTC	2 cut(s)	146, 312
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	320, 367
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	38
XmaJI	CCTAGG	1 cut(s)	115
XspI	CTAG	5 cut(s)	44, 116, 180, 191, 373
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.