Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004521

Physical Location & Seq

Genomic Coordinates Reverse (-)

82109597 .. 82111009

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036581

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGCAATTCTGCTTCACACAGTCAAATATCTCTCAGCAAAGAAATATCCCTTTGTACAAAGAGACAAAAGTTTCTGAATAAGGCTTTAAAGCGAAGGTGTGACCTTGCATATGGACAGTTGAAGTTTAATCGTTGTCACCAAGAAGTAGCCGACGCCATAAAGACATTCATCCAAAAACAGAATCCCTCTCCAGTGCCAGAAAGGAGGAACGTCTTGGAATTCTTGAAGGCATTGGAAGGTGTTGAAAAACAATTTCGTTACGCCTATAAGTCTGGTAAGTATGTCTCAAAGAAGTTGGAGACAGAGAGTATTAAAAAGAGTCCTAAATCATTGCAAACTCCCAAACTCTTCCGCTCACTATCAAGGAGCAGCTCTAGAGTTCGTAGTTCAACTTTTGCAGAATCTGAAATAATGGGTTCAACACTGACACGATTGAAGCTGTGGGAGGAGAAACTCTACAAGGATTTGAAGTACGAAAAGGAAGCCATGAAATCAGATAAGAGCAATCCCCATGCAGAAACCAAGAAAGAGGAGGATCAGATCATAACGGTGAACGCCAAAATTGAGGTTTACCAAGAGAGTGCTGAAAACAACACTAAGAAAATTACTGAATTGAGAGACAAACAGTTGCTTCCCAAACTAGTTGAGCAGCTAGATGGGATGATGGAAAACTGGAGAGCAATGTCAGAGTTTTATGAAAACCAAAAGAAGATTATGTCTCAAGTAAAAGAATCTCCCCCATTACTCTGCGATGACGTGCACCGAGAAGCTACTAAAACGCTAAAAGAAAAGCTTCACAATTGGCGCCCTAGCTTTGCTTTATATATATCCCTACAAAAAGCATACGTTGAAGTTCTTTATTGTTGGCTCTCGAAGAACAGCCCACCAACATTGGTTAGCGACAATAATGGTGATTGGTTAGGTTTCCTAAAAATTCTGGAAAGTAATACAAAGACGGTGACTAGTCAGATGAAAAGGTTTCGGAAAGATGTTGAAGCCCTGTTAGCTCAACAGAGGAAGGAGCATTACATAAACATGGAGATCAAGCGACTTGAGCATAGAGTCAAGCATAGAGAGAAACGGATTTCGGAACTTGAGAATATAGTCAAGCATAGAGAGGAACGGATTTCGGAACTTGAGAATAATGACGTAGAAAATATTTCTCATGAGGGTGATGGAGCAGAGATCCAGAGATTGAAGGGCAAGATTGAGGAGTTAAAGGGTGAGATTGAGGAGTTTAATGGCGAGATAGAGGAAAATAATGAGGAACTTCAATGTAGAATGAAGAAGACGCAGCAAATGGTGAATCAATTTCAGACCGGGTTCTCTAAAGTTTTCGAAACTCTGGCAGTGTTTTCACGCAAAGCTACAGAAATCTACACTGAGCTTATCAAATGCCTGCGCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

471

Amino Acids

55.09

Weight (kDa)

9.2

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	5 - 60	4.3e-07	Protein of unknown function (DUF630)
DUF632	PF04782	76 - 295	3.2e-34	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11140 FvH4_3g42260
malus_domestica	MD02G1014200.v1.1
prunus_persica	Prupe.7G172100_v2.0.a1 Prupe.7G174400_v2.0.a1 Prupe.7G174500_v2.0.a1
pyrus_communis	pycom02g01300
rosa_chinensis	RchiOBHm_Chr2g0098421
rosa_laevigata	RLG00000016798 RLG00000036577 RLG00000036578 RLG00000036581
rosa_multiflora	Rmu_sc0003437.1_g000007 Rmu_ssc0000196.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005980
rosa_rugosa	Rorug02G0073100 Rorug05G0440800.1 Rorug05G0441000 Rorug05G0441100
rosa_samantha	Rh2AG120400 Rh2BG123200 Rh2CG124800 Rh2DG124900 Rh5AG497900 Rh5BG518700 Rh5BG518800 Rh5CG542400 Rh5CG542500 Rh5DG530200 Rh5DG530400
rosa_wichuraiana	Rw2G009420 Rw5G046150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1406
AccB1I	GGYRCC	1 cut(s)	807
AccBSI	CCGCTC	1 cut(s)	357
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	546, 1183
AcsI	RAATTY	2 cut(s)	221, 936
AcyI	GRCGYC	2 cut(s)	156, 808
AfaI	GTAC	2 cut(s)	58, 476
AhlI	ACTAGT	2 cut(s)	643, 965
AjiI	CACGTC	1 cut(s)	760
AluBI	AGCT	9 cut(s)	375, 442, 655, 773, 796, 816, 1010, 1370, 1390
AluI	AGCT	9 cut(s)	375, 442, 655, 773, 796, 816, 1010, 1370, 1390
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	5 cut(s)	58, 292, 296, 615, 726
Alw44I	GTGCAC	1 cut(s)	761
AlwI	GGATC	2 cut(s)	546, 1183
AlwNI	CAGNNNCTG	1 cut(s)	407
ApaLI	GTGCAC	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	372, 652, 1297
ApoI	RAATTY	2 cut(s)	221, 936
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	810, 1407
AsuC2I	CCSGG	1 cut(s)	1324
AsuHPI	GGTGA	7 cut(s)	131, 565, 926, 973, 1187, 1238, 1318
AsuII	TTCGAA	1 cut(s)	1341
BaeGI	GKGCMC	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	807
BarI	GAAGNNNNNNTAC	2 cut(s)	1013, 1045
BbsI	GAAGAC	1 cut(s)	1298
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	3 cut(s)	384, 664, 1309
BccI	CCATC	3 cut(s)	653, 661, 1172
BcnI	CCSGG	1 cut(s)	1324
BcoDI	GTCTC	5 cut(s)	58, 292, 296, 615, 726
BcuI	ACTAGT	2 cut(s)	643, 965
BfaI	CTAG	5 cut(s)	378, 644, 656, 813, 966
BfmI	CTRYAG	1 cut(s)	1371
BfoI	RGCGCY	1 cut(s)	811
BisI	GCNGC	3 cut(s)	373, 653, 1298
BlsI	GCNGC	3 cut(s)	374, 654, 1299
Bme1390I	CCNGG	1 cut(s)	1324
BmgBI	CACGTC	1 cut(s)	760
BmiI	GGNNCC	1 cut(s)	809
BmrFI	CCNGG	1 cut(s)	1324
BpiI	GAAGAC	1 cut(s)	1298
BpmI	CTGGAG	2 cut(s)	177, 697
Bpu14I	TTCGAA	1 cut(s)	1341
BpuEI	CTTGAG	4 cut(s)	708, 1076, 1118, 1160
BpuMI	CCSGG	1 cut(s)	1324
BsaAI	YACGTR	1 cut(s)	1410
BsaHI	GRCGYC	2 cut(s)	156, 808
Bse1I	ACTGG	2 cut(s)	194, 680
Bse3DI	GCAATG	2 cut(s)	332, 690
BseGI	GGATG	2 cut(s)	171, 669
BseMI	GCAATG	2 cut(s)	332, 690
BseMII	CTCAG	2 cut(s)	49, 1377
BseNI	ACTGG	2 cut(s)	194, 680
BseRI	GAGGAG	4 cut(s)	464, 548, 1229, 1250
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	3 cut(s)	384, 664, 1309
BshNI	GGYRCC	1 cut(s)	807
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	1 cut(s)	1323
BsmAI	GTCTC	5 cut(s)	58, 292, 296, 615, 726
Bsp119I	TTCGAA	1 cut(s)	1341
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp1407I	TGTACA	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	538, 543, 1044, 1188
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	48, 1378
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	1 cut(s)	809
BspPI	GGATC	2 cut(s)	546, 1183
BspT104I	TTCGAA	1 cut(s)	1341
BspT107I	GGYRCC	1 cut(s)	807
BsrBI	CCGCTC	1 cut(s)	357
BsrDI	GCAATG	2 cut(s)	332, 690
BsrGI	TGTACA	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	194, 680
BssMI	GATC	4 cut(s)	538, 543, 1044, 1188
BssNI	GRCGYC	2 cut(s)	156, 808
Bst4CI	ACNGT	5 cut(s)	23, 120, 553, 630, 961
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	2 cut(s)	156, 808
BstAUI	TGTACA	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	1410
BstBI	TTCGAA	1 cut(s)	1341
BstC8I	GCNNGC	1 cut(s)	1403
BstDEI	CTNAG	3 cut(s)	35, 600, 1386
BstF5I	GGATG	2 cut(s)	171, 669
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	2 cut(s)	810, 1407
BstKTI	GATC	4 cut(s)	541, 546, 1047, 1191
BstMAI	GTCTC	5 cut(s)	58, 292, 296, 615, 726
BstMBI	GATC	4 cut(s)	538, 543, 1044, 1188
BstMWI	GCNNNNNNNGC	2 cut(s)	1007, 1057
BstSCI	CCNGG	1 cut(s)	1322
BstSFI	CTRYAG	1 cut(s)	1371
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	3 cut(s)	384, 664, 1309
BstV2I	GAAGAC	1 cut(s)	1298
BstX2I	RGATCY	1 cut(s)	1188
BstYI	RGATCY	1 cut(s)	1188
BtgZI	GCGATG	1 cut(s)	768
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	2 cut(s)	171, 669
BtsI	GCAGTG	1 cut(s)	1359
BtsIMutI	CAGTG	4 cut(s)	201, 425, 1359, 1383
Cac8I	GCNNGC	1 cut(s)	1403
CaiI	CAGNNNCTG	1 cut(s)	407
CciI	TCATGA	1 cut(s)	1168
CfoI	GCGC	2 cut(s)	810, 1407
CseI	GACGC	2 cut(s)	164, 1303
Csp6I	GTAC	2 cut(s)	57, 475
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	4 cut(s)	490, 515, 1039, 1169
CviQI	GTAC	2 cut(s)	57, 475
DdeI	CTNAG	3 cut(s)	35, 600, 1386
DinI	GGCGCC	1 cut(s)	809
DpnI	GATC	4 cut(s)	540, 545, 1046, 1190
DpnII	GATC	4 cut(s)	538, 543, 1044, 1188
DraI	TTTAAA	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	221
EgeI	GGCGCC	1 cut(s)	809
EheI	GGCGCC	1 cut(s)	809
FaeI	CATG	4 cut(s)	493, 518, 1042, 1172
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FatI	CATG	4 cut(s)	489, 514, 1038, 1168
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	373, 653, 1298
FokI	GGATG	2 cut(s)	158, 676
Fsp4HI	GCNGC	3 cut(s)	373, 653, 1298
FspBI	CTAG	5 cut(s)	378, 644, 656, 813, 966
FspI	TGCGCA	1 cut(s)	1406
GlaI	GCGC	2 cut(s)	809, 1406
GluI	GCNGC	3 cut(s)	373, 653, 1298
GsuI	CTGGAG	2 cut(s)	177, 697
HaeII	RGCGCY	1 cut(s)	811
HapII	CCGG	1 cut(s)	1323
HgaI	GACGC	2 cut(s)	164, 1303
HhaI	GCGC	2 cut(s)	810, 1407
Hin1I	GRCGYC	2 cut(s)	156, 808
Hin1II	CATG	4 cut(s)	493, 518, 1042, 1172
Hin6I	GCGC	2 cut(s)	808, 1405
HinP1I	GCGC	2 cut(s)	808, 1405
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	6 cut(s)	184, 322, 404, 734, 1065, 1309
HpaII	CCGG	1 cut(s)	1323
HphI	GGTGA	7 cut(s)	131, 565, 926, 973, 1187, 1238, 1318
Hpy166II	GTNNAC	3 cut(s)	556, 574, 763
Hpy188III	TCNNGA	6 cut(s)	226, 378, 874, 941, 1169, 1192
Hpy8I	GTNNAC	3 cut(s)	556, 574, 763
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	5 cut(s)	90, 223, 233, 1015, 1195
HpyCH4III	ACNGT	5 cut(s)	23, 120, 553, 630, 961
HpyCH4IV	ACGT	5 cut(s)	213, 759, 849, 1152, 1409
HpyCH4V	TGCA	5 cut(s)	110, 337, 401, 518, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1007, 1057
HpyF3I	CTNAG	3 cut(s)	35, 600, 1386
HpySE526I	ACGT	5 cut(s)	213, 759, 849, 1152, 1409
Hsp92I	GRCGYC	2 cut(s)	156, 808
Hsp92II	CATG	4 cut(s)	493, 518, 1042, 1172
HspAI	GCGC	2 cut(s)	808, 1405
KasI	GGCGCC	1 cut(s)	807
Kzo9I	GATC	4 cut(s)	538, 543, 1044, 1188
LmnI	GCTCC	3 cut(s)	369, 1024, 1181
LpnPI	CCDG	9 cut(s)	207, 213, 261, 661, 926, 1016, 1205, 1334, 1336
Lsp1109I	GCAGC	3 cut(s)	384, 664, 1309
MaeI	CTAG	5 cut(s)	378, 644, 656, 813, 966
MaeII	ACGT	5 cut(s)	213, 759, 849, 1152, 1409
MaeIII	GTNAC	4 cut(s)	101, 137, 260, 961
MalI	GATC	4 cut(s)	540, 545, 1046, 1190
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	4 cut(s)	538, 543, 1044, 1188
MboII	GAAGA	5 cut(s)	343, 724, 889, 1300, 1303
MfeI	CAATTG	1 cut(s)	802
MflI	RGATCY	1 cut(s)	1188
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	9 cut(s)	7, 221, 254, 564, 606, 614, 802, 936, 1313
Mly113I	GGCGCC	1 cut(s)	808
MlyI	GAGTC	2 cut(s)	331, 1074
MmeI	TCCRAC	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	5 cut(s)	89, 129, 315, 1220, 1242
MslI	CAYNNNNRTG	3 cut(s)	551, 1037, 1173
MspI	CCGG	1 cut(s)	1323
MspR9I	CCNGG	1 cut(s)	1324
MunI	CAATTG	1 cut(s)	802
MwoI	GCNNNNNNNGC	2 cut(s)	1007, 1057
NarI	GGCGCC	1 cut(s)	808
NciI	CCSGG	1 cut(s)	1324
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	4 cut(s)	538, 543, 1044, 1188
NlaIII	CATG	4 cut(s)	493, 518, 1042, 1172
NlaIV	GGNNCC	1 cut(s)	809
NmuCI	GTSAC	3 cut(s)	101, 137, 961
NsbI	TGCGCA	1 cut(s)	1406
NspV	TTCGAA	1 cut(s)	1341
PagI	TCATGA	1 cut(s)	1168
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	4 cut(s)	184, 404, 734, 1309
PkrI	GCNGC	3 cut(s)	374, 654, 1299
PleI	GAGTC	2 cut(s)	330, 1073
PluTI	GGCGCC	1 cut(s)	811
PpsI	GAGTC	2 cut(s)	330, 1073
Ppu21I	YACGTR	1 cut(s)	1410
PspN4I	GGNNCC	1 cut(s)	809
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	1188
RsaI	GTAC	2 cut(s)	58, 476
RsaNI	GTAC	2 cut(s)	57, 475
RseI	CAYNNNNRTG	3 cut(s)	551, 1037, 1173
SaqAI	TTAA	5 cut(s)	89, 129, 315, 1220, 1242
SatI	GCNGC	3 cut(s)	373, 653, 1298
Sau3AI	GATC	4 cut(s)	538, 543, 1044, 1188
SchI	GAGTC	2 cut(s)	331, 1074
ScrFI	CCNGG	1 cut(s)	1324
SduI	GDGCHC	1 cut(s)	765
SfcI	CTRYAG	1 cut(s)	1371
SfoI	GGCGCC	1 cut(s)	809
SfuI	TTCGAA	1 cut(s)	1341
SmiMI	CAYNNNNRTG	3 cut(s)	551, 1037, 1173
SmlI	CTYRAG	4 cut(s)	723, 1055, 1097, 1139
SmoI	CTYRAG	4 cut(s)	723, 1055, 1097, 1139
SpeI	ACTAGT	2 cut(s)	643, 965
Sse9I	AATT	9 cut(s)	7, 221, 254, 564, 606, 614, 802, 936, 1313
SsiI	CCGC	1 cut(s)	355
SspDI	GGCGCC	1 cut(s)	807
SspI	AATATT	1 cut(s)	1162
SspMI	CTAG	5 cut(s)	378, 644, 656, 813, 966
StyD4I	CCNGG	1 cut(s)	1322
TaaI	ACNGT	5 cut(s)	23, 120, 553, 630, 961
TaiI	ACGT	5 cut(s)	216, 762, 852, 1155, 1412
TaqI	TCGA	2 cut(s)	875, 1341
TasI	AATT	9 cut(s)	7, 221, 254, 564, 606, 614, 802, 936, 1313
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	4 cut(s)	184, 404, 734, 1309
Tru1I	TTAA	5 cut(s)	89, 129, 315, 1220, 1242
Tru9I	TTAA	5 cut(s)	89, 129, 315, 1220, 1242
TscAI	CASTG	4 cut(s)	201, 432, 1359, 1390
TseFI	GTSAC	3 cut(s)	101, 137, 961
TseI	GCWGC	3 cut(s)	372, 652, 1297
Tsp45I	GTSAC	3 cut(s)	101, 137, 961
TspDTI	ATGAA	5 cut(s)	160, 506, 714, 989, 1301
TspGWI	ACGGA	2 cut(s)	1099, 1141
TspRI	CASTG	4 cut(s)	201, 432, 1359, 1390
VneI	GTGCAC	1 cut(s)	761
XapI	RAATTY	2 cut(s)	221, 936
XbaI	TCTAGA	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	5 cut(s)	378, 644, 656, 813, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.