Rroxscaffold_1G00005980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004521
Physical Location & Seq
Forward (+)
8015336 .. 8022433
7098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005980.1

Sequence Viewer

Length: 369 bp
ATGGAGATCAAGCGACTTGAGAAAATAGTCAAGCATAGAGAGGAACGGATTTCGGAACTTGAGAATGACGTAGAAAATATTTCTCAAGAGGGTGATGGAGCAGAGATCCAGAGATTGAAGGGCAAGATTGAGGAGTTAAAGGGTGAGATTGAGAAATTTAATGGCGATGAGAAACTTCAATGTAGAATGAAGAAGACGCAGCAAATGGTGAATCAATTTCAGACCGGGTTCTCTAAAGTTTTCGAAACTCTGGCAGAGTTTTCACGCAAAGCTACAGAAATCTACACTGAGCTTATCAAATGCCTGCGCACAGCGGCCTCCTCAAAAATTTCATTAACAACACGAACCACCGGACTAGGAGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

7.73

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 308
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 2 cut(s) 155, 327
AgsI TTSAA 2 cut(s) 118, 179
AluBI AGCT 2 cut(s) 272, 292
AluI AGCT 2 cut(s) 272, 292
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 155, 327
AspLEI GCGC 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 3 cut(s) 104, 155, 220
AsuII TTCGAA 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 226
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 200, 315
BlsI GCNGC 2 cut(s) 201, 316
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 3 cut(s) 38, 69, 80
BpuMI CCSGG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 350
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 146, 310
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 225, 351
BsnI GGCC 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 243
Bsp143I GATC 2 cut(s) 6, 105
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 243
BssMI GATC 2 cut(s) 6, 105
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 2 cut(s) 9, 108
BstMBI GATC 2 cut(s) 6, 105
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 305
CfoI GCGC 1 cut(s) 309
CseI GACGC 1 cut(s) 205
CviJI RGCY 3 cut(s) 272, 292, 317
CviKI_1 RGCY 3 cut(s) 272, 292, 317
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 8, 107
DpnII GATC 2 cut(s) 6, 105
FaiI YATR 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 200, 315
Fsp4HI GCNGC 2 cut(s) 200, 315
FspBI CTAG 1 cut(s) 356
FspI TGCGCA 1 cut(s) 308
GlaI GCGC 1 cut(s) 308
GluI GCNGC 2 cut(s) 200, 315
HaeIII GGCC 1 cut(s) 317
HapII CCGG 2 cut(s) 225, 351
HgaI GACGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 309
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 1 cut(s) 211
HpaII CCGG 2 cut(s) 225, 351
HphI GGTGA 3 cut(s) 104, 155, 220
Hpy188I TCNGA 2 cut(s) 55, 222
Hpy188III TCNNGA 3 cut(s) 86, 109, 366
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 69
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 69
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 6, 105
LmnI GCTCC 2 cut(s) 98, 359
LpnPI CCDG 5 cut(s) 122, 236, 238, 317, 364
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 69
MalI GATC 2 cut(s) 8, 107
MboI GATC 2 cut(s) 6, 105
MboII GAAGA 2 cut(s) 202, 205
MflI RGATCY 1 cut(s) 105
MluCI AATT 3 cut(s) 155, 215, 327
MnlI CCTC 5 cut(s) 34, 82, 124, 328, 331
MseI TTAA 3 cut(s) 137, 159, 335
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 225, 351
MspR9I CCNGG 1 cut(s) 226
NciI CCSGG 1 cut(s) 226
NdeII GATC 2 cut(s) 6, 105
NsbI TGCGCA 1 cut(s) 308
NspV TTCGAA 1 cut(s) 243
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 201, 316
PsuI RGATCY 1 cut(s) 105
SaqAI TTAA 3 cut(s) 137, 159, 335
SatI GCNGC 2 cut(s) 200, 315
Sau3AI GATC 2 cut(s) 6, 105
ScrFI CCNGG 1 cut(s) 226
SetI ASST 3 cut(s) 72, 274, 294
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 243
SmlI CTYRAG 3 cut(s) 17, 59, 84
SmoI CTYRAG 3 cut(s) 17, 59, 84
Sse9I AATT 3 cut(s) 155, 215, 327
SsiI CCGC 1 cut(s) 314
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 224
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 243
TasI AATT 3 cut(s) 155, 215, 327
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 3 cut(s) 137, 159, 335
Tru9I TTAA 3 cut(s) 137, 159, 335
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 203, 321
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 292
XapI RAATTY 2 cut(s) 155, 327
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.