Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004521

Physical Location & Seq

Genomic Coordinates Forward (+)

17420886 .. 17422903

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G174400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGGGTTGCAAGGTCTCAAAGCAAAGTAAAAAGCTTTGTAGGAAGAGAAAGGAGCAGCTGAAATTGGCTGTGGATAGAAGGTATGCGTTTGCAGAGGCACAGAGGGAATATAACCAGTCGCTGTATGCAGTGGCAATTGCTATAAGGTCGTTTGTAGCAAGCCACTCCTCTCCACCACCATCTGATTCTGAACCAACCAAAAACACCGGTGCTGGCCCTTTTCTTGATTCTGAAACTTCTATAAGCTCTTCAGAGGCAGACAGAAAAAAACAGCTACAAGGAAGCTCAGATGAAGAGAATAGCGATCATAATGCTGGGACTGATGGGGAAGAATTAGGGTTGGTTTTGCTGAATGATGAGGCTGTGAGAGAAGGGAGGGAATTGTTGGAAGCATTGAAAGAGGTTGAGGTCCAATTCCTTAGCGCCTATAATTCCAGTTTGGACGTTACCAGGATGCTAGGCACCAACACGGATCAAATGCAATCTGCATTGGAGGAAACTGAAGAGAACTCAAGTAAACTCAAAAAAAGCCGCTCCATCTCATCTATATTATCTTCGTCTTCCTCCCGAAAAAGCCTCCTTAGATCTAGCACCAGAAGTTCTTCAACAAGCACCAATTTTAATGGTGGTCTCTTTGATGACAATGGAGCAATGGGATCCAAGTGCCATTCGTTAACACTGGGGACGCTATATGCTTTGGAGCAAAAACTCTATAAGGATGTGAAGGCTGGAGAGGAAACCAGTAGATTATATGATCGAAAATGCTCCCAGTATTCGAGAAACCAAGGACATGGCCTAAAGACTGAAGACAAAATTCGAGTTGAATTGCAATATTCCAGAATTTCGGTTGCCAAAGGAAGTGCGGAATCAACATTTAAAAAAATTCGAAAACTGAGAGATGAGGAGCTGCAACCACAACTTATTGAGTTGTTACAAGGGCTGAAGAAAAATTGGAAGGTCATGTCAGAATATCATGAAATACAACATCAAATCATGTCAGAAGTGAAATGGCTCAAGTGTTCATCTTATGGAAAGTCACAACAGCATGCAACTCAAACGCTTCAAGTAGACCTTAAAAAATGGCGTGCTTGCTTTGCTCAATATGTTTGTTCACAGAAAGCATACATTGAGGCTCTTGATGGTTGGATGATTAAGTTTGATGCTCCTGAAACCGAAGCCTCCTCAGAGAATTGGTATTCGCTTCGACCGTGTAGAGTAAGCGTCCTACCAACAACAGAAATATGTCATAATTGGTTAGATGGCATAGATAAGCTGCCATATAAAACAGTGGCTGGTGCCATGGAAAGCTTTGGCGAGCATGTCCAAGCCTTGATGGTTCAACAAGGTAAGGAGCATCAACAAAAGAGGAAGGTTGATGGGCTTGCTGGAGAACTTCGTAGGCAGGCTTTGTTACTTGAAATGAATAAACACGTGAGTGAGTTAAAGTTATTTTATGTGCAAGATGATAAACCGCATGAGCAAAAGCACACGAAGCCCTTGAAAAAGATGGAGAACGAGCTAGAGCAAGAGAAGGCAAAACATCATACAGCCATGGAGGAGACACGTGATATGTATGTGAATGGATTTCAAAAGGGGTTTTCGTCAGTTTTTAAATCCTTGGCCGATTTTTCCAAGACTTCCATGAAAATTTATGATGAGCTTTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

557

Amino Acids

63.06

Weight (kDa)

8.16

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11140 FvH4_3g42260
malus_domestica	MD02G1014200.v1.1
prunus_persica	Prupe.7G172100_v2.0.a1 Prupe.7G174400_v2.0.a1 Prupe.7G174500_v2.0.a1
pyrus_communis	pycom02g01300
rosa_chinensis	RchiOBHm_Chr2g0098421
rosa_laevigata	RLG00000016798 RLG00000036577 RLG00000036578 RLG00000036581
rosa_multiflora	Rmu_sc0003437.1_g000007 Rmu_ssc0000196.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005980
rosa_rugosa	Rorug02G0073100 Rorug05G0440800.1 Rorug05G0441000 Rorug05G0441100
rosa_samantha	Rh2AG120400 Rh2BG123200 Rh2CG124800 Rh2DG124900 Rh5AG497900 Rh5BG518700 Rh5BG518800 Rh5CG542400 Rh5CG542500 Rh5DG530200 Rh5DG530400
rosa_wichuraiana	Rw2G009420 Rw5G046150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	461, 1295
AccBSI	CCGCTC	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	1068
AciI	CCGC	3 cut(s)	532, 863, 1472
AclWI	GGATC	3 cut(s)	480, 651, 664
AcoI	YGGCCR	1 cut(s)	1620
AcsI	RAATTY	4 cut(s)	813, 840, 882, 1647
AcuI	CTGAAG	4 cut(s)	234, 522, 825, 962
AcvI	CACGTG	2 cut(s)	1432, 1565
AflIII	ACRYGT	2 cut(s)	1429, 1562
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	8 cut(s)	397, 606, 824, 1064, 1340, 1418, 1501, 1589
AjnI	CCWGG	1 cut(s)	449
AleI	CACNNNNGTG	1 cut(s)	1434
Alw26I	GTCTC	3 cut(s)	19, 635, 1553
AlwI	GGATC	3 cut(s)	480, 651, 664
AlwNI	CAGNNNCTG	2 cut(s)	121, 1292
AoxI	GGCC	3 cut(s)	214, 793, 1620
ApeKI	GCWGC	3 cut(s)	55, 907, 1273
ApoI	RAATTY	4 cut(s)	813, 840, 882, 1647
AsiGI	ACCGGT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	2 cut(s)	215, 409
AsuII	TTCGAA	1 cut(s)	886
AvaII	GGWCC	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	656
BanI	GGYRCC	2 cut(s)	461, 1295
BbrPI	CACGTG	2 cut(s)	1432, 1565
BbsI	GAAGAC	2 cut(s)	552, 813
BbvI	GCAGC	3 cut(s)	67, 894, 1260
BccI	CCATC	8 cut(s)	187, 317, 545, 1133, 1253, 1327, 1370, 1501
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	19, 635, 1553
BfaI	CTAG	3 cut(s)	458, 588, 1520
BfoI	RGCGCY	1 cut(s)	426
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	4 cut(s)	56, 532, 908, 1274
BlsI	GCNGC	4 cut(s)	57, 533, 909, 1275
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	215, 409
BmiI	GGNNCC	3 cut(s)	463, 658, 1297
BmrFI	CCNGG	1 cut(s)	451
BmrI	ACTGGG	2 cut(s)	689, 763
BmsI	GCATC	3 cut(s)	444, 1150, 1363
BmuI	ACTGGG	2 cut(s)	689, 763
BpiI	GAAGAC	2 cut(s)	552, 813
BpmI	CTGGAG	2 cut(s)	750, 1407
Bpu10I	CCTNAGC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	886
BpuEI	CTTGAG	2 cut(s)	496, 998
BsaAI	YACGTR	2 cut(s)	1432, 1565
BsaI	GGTCTC	2 cut(s)	19, 635
BsaJI	CCNNGG	4 cut(s)	784, 1299, 1551, 1617
BsaWI	WCCGGW	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	5 cut(s)	115, 435, 684, 741, 769
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	4 cut(s)	784, 1299, 1551, 1617
BseGI	GGATG	3 cut(s)	459, 724, 1152
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	3 cut(s)	300, 884, 1197
BseNI	ACTGG	5 cut(s)	115, 435, 684, 741, 769
BseRI	GAGGAG	4 cut(s)	157, 917, 1171, 1571
BseXI	GCAGC	3 cut(s)	67, 894, 1260
BseYI	CCCAGC	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	1208
BshFI	GGCC	3 cut(s)	216, 795, 1622
BshNI	GGYRCC	2 cut(s)	461, 1295
BshTI	ACCGGT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	1208
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	331, 697
BsmAI	GTCTC	3 cut(s)	19, 635, 1553
BsmFI	GGGAC	2 cut(s)	331, 697
BsnI	GGCC	3 cut(s)	216, 795, 1622
Bso31I	GGTCTC	2 cut(s)	19, 635
Bsp119I	TTCGAA	1 cut(s)	886
Bsp143I	GATC	5 cut(s)	304, 472, 584, 656, 754
Bsp19I	CCATGG	2 cut(s)	1299, 1551
BspACI	CCGC	3 cut(s)	532, 863, 1472
BspANI	GGCC	3 cut(s)	216, 795, 1622
BspCNI	CTCAG	3 cut(s)	299, 885, 1196
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	3 cut(s)	463, 658, 1297
BspPI	GGATC	3 cut(s)	480, 651, 664
BspQI	GCTCTTC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	886
BspT107I	GGYRCC	2 cut(s)	461, 1295
BspTNI	GGTCTC	2 cut(s)	19, 635
BsrBI	CCGCTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	5 cut(s)	115, 435, 684, 741, 769
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	784, 1299, 1551, 1617
BssMI	GATC	5 cut(s)	304, 472, 584, 656, 754
BssT1I	CCWWGG	4 cut(s)	784, 1299, 1551, 1617
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	2 cut(s)	1209, 1288
Bst6I	CTCTTC	4 cut(s)	38, 253, 288, 498
BstBAI	YACGTR	2 cut(s)	1432, 1565
BstBI	TTCGAA	1 cut(s)	886
BstC8I	GCNNGC	8 cut(s)	160, 214, 1047, 1086, 1090, 1316, 1383, 1404
BstDEI	CTNAG	5 cut(s)	286, 419, 581, 893, 1183
BstDSI	CCRYGG	2 cut(s)	1299, 1551
BstF5I	GGATG	3 cut(s)	459, 724, 1152
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	5 cut(s)	307, 475, 587, 659, 757
BstMAI	GTCTC	3 cut(s)	19, 635, 1553
BstMBI	GATC	5 cut(s)	304, 472, 584, 656, 754
BstMCI	CGRYCG	1 cut(s)	1208
BstMWI	GCNNNNNNNGC	2 cut(s)	1094, 1492
BstNI	CCWGG	1 cut(s)	451
BstNSI	RCATGY	2 cut(s)	1049, 1322
BstSCI	CCNGG	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	67, 894, 1260
BstV2I	GAAGAC	2 cut(s)	552, 813
BstX2I	RGATCY	2 cut(s)	584, 656
BstXI	CCANNNNNNTGG	1 cut(s)	791
BstYI	RGATCY	2 cut(s)	584, 656
BsuRI	GGCC	3 cut(s)	216, 795, 1622
BtgI	CCRYGG	2 cut(s)	1299, 1551
BtsCI	GGATG	3 cut(s)	459, 724, 1152
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	135, 677, 1293
Cac8I	GCNNGC	8 cut(s)	160, 214, 1047, 1086, 1090, 1316, 1383, 1404
CaiI	CAGNNNCTG	2 cut(s)	121, 1292
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	215, 409
CseI	GACGC	2 cut(s)	694, 1210
CspAI	ACCGGT	1 cut(s)	206
DdeI	CTNAG	5 cut(s)	286, 419, 581, 893, 1183
DpnI	GATC	5 cut(s)	306, 474, 586, 658, 756
DpnII	GATC	5 cut(s)	304, 472, 584, 656, 754
DraI	TTTAAA	2 cut(s)	877, 1612
EaeI	YGGCCR	1 cut(s)	1620
Eam1104I	CTCTTC	4 cut(s)	38, 253, 288, 498
EarI	CTCTTC	4 cut(s)	38, 253, 288, 498
Eco130I	CCWWGG	4 cut(s)	784, 1299, 1551, 1617
Eco31I	GGTCTC	2 cut(s)	19, 635
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	4 cut(s)	234, 522, 825, 962
Eco72I	CACGTG	2 cut(s)	1432, 1565
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	4 cut(s)	784, 1299, 1551, 1617
ErhI	CCWWGG	4 cut(s)	784, 1299, 1551, 1617
FalI	AAGNNNNNCTT	2 cut(s)	1056, 1088
FaqI	GGGAC	2 cut(s)	331, 697
FblI	GTMKAC	1 cut(s)	1068
Fnu4HI	GCNGC	4 cut(s)	56, 532, 908, 1274
FokI	GGATG	3 cut(s)	466, 731, 1159
Fsp4HI	GCNGC	4 cut(s)	56, 532, 908, 1274
FspBI	CTAG	3 cut(s)	458, 588, 1520
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	4 cut(s)	56, 532, 908, 1274
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	2 cut(s)	750, 1407
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	216, 795, 1622
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	2 cut(s)	694, 1210
HhaI	GCGC	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HindIII	AAGCTT	2 cut(s)	32, 1306
HinfI	GANTC	3 cut(s)	185, 227, 866
HpaI	GTTAAC	1 cut(s)	675
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	4 cut(s)	518, 675, 1069, 1112
Hpy188I	TCNGA	8 cut(s)	184, 190, 232, 253, 289, 967, 1000, 1186
Hpy188III	TCNNGA	7 cut(s)	224, 567, 777, 837, 974, 1136, 1166
Hpy8I	GTNNAC	4 cut(s)	518, 675, 1069, 1112
HpyAV	CCTTC	6 cut(s)	72, 365, 718, 949, 1363, 1525
HpyCH4III	ACNGT	2 cut(s)	1209, 1288
HpyCH4IV	ACGT	3 cut(s)	444, 1431, 1564
HpyCH4V	TGCA	9 cut(s)	9, 92, 128, 481, 488, 829, 910, 1049, 1459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1094, 1492
HpyF3I	CTNAG	5 cut(s)	286, 419, 581, 893, 1183
HpySE526I	ACGT	3 cut(s)	444, 1431, 1564
HspAI	GCGC	1 cut(s)	423
KspAI	GTTAAC	1 cut(s)	675
Kzo9I	GATC	5 cut(s)	304, 472, 584, 656, 754
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	8 cut(s)	52, 539, 647, 700, 770, 904, 1168, 1351
Lsp1109I	GCAGC	3 cut(s)	67, 894, 1260
LweI	GCATC	3 cut(s)	444, 1150, 1363
MaeI	CTAG	3 cut(s)	458, 588, 1520
MaeII	ACGT	3 cut(s)	444, 1431, 1564
MaeIII	GTNAC	4 cut(s)	445, 930, 1035, 1410
MalI	GATC	5 cut(s)	306, 474, 586, 658, 756
MbiI	CCGCTC	1 cut(s)	534
MboI	GATC	5 cut(s)	304, 472, 584, 656, 754
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	584, 656
MmeI	TCCRAC	2 cut(s)	366, 1124
MroXI	GAANNNNTTC	1 cut(s)	601
MseI	TTAA	7 cut(s)	621, 674, 876, 1074, 1152, 1442, 1611
MslI	CAYNNNNRTG	1 cut(s)	1434
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	1094, 1492
NcoI	CCATGG	2 cut(s)	1299, 1551
NdeII	GATC	5 cut(s)	304, 472, 584, 656, 754
NlaIV	GGNNCC	3 cut(s)	463, 658, 1297
NmuCI	GTSAC	1 cut(s)	1035
NspI	RCATGY	2 cut(s)	1049, 1322
NspV	TTCGAA	1 cut(s)	886
OliI	CACNNNNGTG	1 cut(s)	1434
PaeI	GCATGC	1 cut(s)	1049
PagI	TCATGA	1 cut(s)	973
PciSI	GCTCTTC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	1205
PdmI	GAANNNNTTC	1 cut(s)	601
PfeI	GAWTC	3 cut(s)	185, 227, 866
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	57, 533, 909, 1275
PmaCI	CACGTG	2 cut(s)	1432, 1565
PmlI	CACGTG	2 cut(s)	1432, 1565
Ppu21I	YACGTR	2 cut(s)	1432, 1565
Psp6I	CCWGG	1 cut(s)	449
PspCI	CACGTG	2 cut(s)	1432, 1565
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	3 cut(s)	463, 658, 1297
PspPI	GGNCC	2 cut(s)	215, 409
PstNI	CAGNNNCTG	2 cut(s)	121, 1292
PsuI	RGATCY	2 cut(s)	584, 656
PvuII	CAGCTG	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	1434
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	7 cut(s)	621, 674, 876, 1074, 1152, 1442, 1611
SatI	GCNGC	4 cut(s)	56, 532, 908, 1274
Sau3AI	GATC	5 cut(s)	304, 472, 584, 656, 754
Sau96I	GGNCC	2 cut(s)	215, 409
ScrFI	CCNGG	1 cut(s)	451
SfaNI	GCATC	3 cut(s)	444, 1150, 1363
SfuI	TTCGAA	1 cut(s)	886
SgrAI	CRCCGGYG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	1434
SmlI	CTYRAG	2 cut(s)	511, 1013
SmoI	CTYRAG	2 cut(s)	511, 1013
SphI	GCATGC	1 cut(s)	1049
SsiI	CCGC	3 cut(s)	532, 863, 1472
SspI	AATATT	1 cut(s)	833
SspMI	CTAG	3 cut(s)	458, 588, 1520
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	4 cut(s)	784, 1299, 1551, 1617
TaaI	ACNGT	2 cut(s)	1209, 1288
TaiI	ACGT	3 cut(s)	447, 1434, 1567
TaqI	TCGA	5 cut(s)	757, 776, 817, 886, 1204
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	185, 227, 866
Tru1I	TTAA	7 cut(s)	621, 674, 876, 1074, 1152, 1442, 1611
Tru9I	TTAA	7 cut(s)	621, 674, 876, 1074, 1152, 1442, 1611
TscAI	CASTG	3 cut(s)	135, 684, 1293
TseFI	GTSAC	1 cut(s)	1035
TseI	GCWGC	3 cut(s)	55, 907, 1273
Tsp45I	GTSAC	1 cut(s)	1035
TspDTI	ATGAA	5 cut(s)	306, 990, 1011, 1436, 1658
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	3 cut(s)	135, 684, 1293
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	4 cut(s)	813, 840, 882, 1647
XceI	RCATGY	2 cut(s)	1049, 1322
XmiI	GTMKAC	1 cut(s)	1068
XmnI	GAANNNNTTC	1 cut(s)	601
XspI	CTAG	3 cut(s)	458, 588, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.